BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44150.1
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897167 jgi|Araly1|897167|Al_scaffold_0005_1133 1074 0.0
Ahg495006 jgi|Araly1|495006|fgenesh2_kg.8__822__AT3G44150.1 713 0.0
> Ahg897167 jgi|Araly1|897167|Al_scaffold_0005_1133
Length=759
Score = 1074 bits (581), Expect = 0.0
Identities = 656/692 (95%), Gaps = 5/692 (1%)
Strand=Plus/Plus
Query 81 AACCGTAGCCTTAGGCGGAGACAGCGGAGGTTCAGGTAACACCAAC-ACTATCTATTCAC 139
|||||||||| ||||||||||| ||||||| | ||||||||||| || |||||||| |
Sbjct 72 AACCGTAGCCATAGGCGGAGACGGCGGAGG---AAGTAACACCAACAAC-ATCTATTCCC 127
Query 140 CATGCTCCGACACCCGAATCCAAAGATCCGATGGATTCACATTCGGTATCGCATTCTCTT 199
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 CATGCTCCGACACCAGAATCCAAAGATCCGATGGATTCACATTCGGAATCGCATTCTCTT 187
Query 200 CTCGTCCCTCCTTCTTCATAAACCAAACGGTTCTTCTCTCTCCCTGTGACCGCCGCCTTT 259
||||||| || |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 188 CTCGTCCTTCTTTCTTCTTAAACCAAACGGTTCTTCTCTCTCCCTGTGACCGTCGACTTT 247
Query 260 CCCTCGCCGCCATGAATTCACAGTTCTCTGTTTTCCGTCCTAAAATCGACGAGATCTCTC 319
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 248 CCCTCGCCGCCATGAATTCACAGTTCTCTCTCTTCCGTCCTAAAATCGACGAGATCTCTC 307
Query 320 TCCTCTCCATCAACACCTCCGCCTTCTTCCCGGACAACTATGGTGGATATATGGTAGCAT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 308 TCCTCTCCATCAACACCTCCGCCTTCTTCCCGGACAACTATGGTGGATATATGGTGGCAT 367
Query 380 TCGCGGGTCGAAAATACGCAGCGAGGTCTATACCGGCTTTTATTGCTAATAGCACCTTCA 439
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 368 TTGCGGGTCGAAAATATGCAGCGAGGTCTATACCGGCTTTTATTGCTAACAGCACGTTTA 427
Query 440 TCGTAACCAGTTTTACTTTGGTGATGGAGTTTCAGAAAGGTAGGCTTCAGAATCTGTATT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TCGTAACCAGTTTTACTTTGGTGATGGAGTTTCAGAAAGGTAGGCTTCAGAATCTGTATT 487
Query 500 GGAAGAGAGACGGGTGTGCGTCGTGTAAAGGGAATCAAAATTTTGTGTGTCTTAATAAGC 559
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 488 GGAAGAGAGACGGGTGTGCTTCGTGCAAAGGGAATCAAAATTTTGTGTGTCTTAACAAGC 547
Query 560 AAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGGAGGTGCCGTGGACTGTAGTC 619
|||||||||||||||||||||||||||||||||| ||||||||| | ||||| || ||||
Sbjct 548 AAGATTGTGCGATAAGAACACCGAGCTGTAAAGGCCGGGGAGGTTCGGTGGATTGCAGTC 607
Query 620 TCGGGATACAGCTGGCGTTTTCCGGGACTGATAAGCACTTGGCGGTTCTCAACTCGTGGT 679
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 TCGGGATTCAGTTGGCGTTTTCCGGCACTGATAAGCACTTGGCGGTTCTCAACTCGTGGT 667
Query 680 ATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTTGTATTCAAACCTCAAGAGCT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTTGTATTCAAACCTCAAGAGCT 727
Query 740 CTTTAACCAATCAGTTCAATAATTTCTTTTGA 771
|||||||||||||||||||||||||||| |||
Sbjct 728 CTTTAACCAATCAGTTCAATAATTTCTTCTGA 759
> Ahg495006 jgi|Araly1|495006|fgenesh2_kg.8__822__AT3G44150.1
Length=876
Score = 713 bits (386), Expect = 0.0
Identities = 534/600 (89%), Gaps = 31/600 (5%)
Strand=Plus/Plus
Query 313 ATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCG-GACAACTATGGTGGATATAT 371
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 287 ATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCGAGACAACTATGGTGGATATAT 346
Query 372 GGTAGCATTCGCGGGTCGAAAATACGCAGCGAGGTCT-ATACCGGCTTTTATTGCTAATA 430
||| |||||||||||||| |||||||||||||||| | || |||||||||||||||||||
Sbjct 347 GGTGGCATTCGCGGGTCGGAAATACGCAGCGAGGT-TGATTCCGGCTTTTATTGCTAATA 405
Query 431 GCACCTTCATCGTAACCAGTTTTAC--T--TTGGTGATG-GA--GT-TTCA--G-AAAGG 479
|||| |||||||||||||||||||| | || | ||| || | || | | |
Sbjct 406 GCACGTTCATCGTAACCAGTTTTACTTTAATTCATCATGAGATCTTATTTATGGTGTTGT 465
Query 480 TAGGCTTCAGAATCTGTATTGGAAGAGAGACGGGTGTGCGTCGTGTAAAGGGAATCAAAA 539
|| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 466 TATGCTTCAAAATCTGTATTGGAAGAGAGACGGGTGTGCGTCGTGCAAGGGGAATCAAAA 525
Query 540 TTTTGTGTGTCTTAATAAGCAAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGG 599
|| | || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 --TT-T-TG----AACAAGCAAGATTGTGCGATAAGAACACCGAGCTGTAAAGGTCGGGG 577
Query 600 AGGTGCCGTGGACTGTAGTCTCGGGATACAGCTGGCGTTTTCCGGGACTGATAAGCACTT 659
|||| | ||||| || ||||||||||| ||| |||| |||| || ||||||||||||||
Sbjct 578 AGGTTCAGTGGATTGCAGTCTCGGGATTCAGTTGGCATTTTTTGGCACTGATAAGCACTT 637
Query 660 GGCGGTTCTCAACTCGTGGTATGAAGTTGAGAATCTTAAGCAGTATTCTCTTTATGGTTT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 638 GGCGGTTCTCAACTCGTGGTATGAAGTCGAGAATCTTAAGCAGTATTCTCTTTATGGTTT 697
Query 720 GTATTCAAACCTCAAGAGCTCTTTAACCAATCAGTTCAATAATTTCTTTTGAGCTTCTTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTATTCAAACCTCAAGAGCTCTTTAACCAATCAGTTCAATAATTTCTTTTGAGCTTCTTG 757
Query 780 AGGA---GTA---GTAT-TT-GTTTGTTTGTATCACGTAAGTTAATCTCTTTGGTGACTT 831
| || ||| || | || |||||||||||||||||||||||||||||||||| |||
Sbjct 758 ATGACTTGTATTTGTTTGTTTGTTTGTTTGTATCACGTAAGTTAATCTCTTTGGTTACT- 816
Query 832 CTCTAATGGTTTATGAAATGTAACACGAAATTGCGGAAATAGTTATGGTTTGGTTCAACC 891
||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 817 CTCTAATGGTTTATGGAATGTAACACGAAATTGCAGAAGTAGTTATGGTTTGGTTCAACC 876
Score = 311 bits (168), Expect = 6e-84
Identities = 261/302 (86%), Gaps = 22/302 (7%)
Strand=Plus/Plus
Query 1 ATTTCCACAACAATTTCAAAACAAAACAAAATGTTCTCTTCGAAAA-CC---CTAACACT 56
||||||| ||||||||| || |||| ||||||||| ||||||||| || ||||||||
Sbjct 1 ATTTCCATAACAATTTC--AA-AAAA-AAAATGTTCCCTTCGAAAACCCTAGCTAACACT 56
Query 57 CCTCGTCTTCTCCGCCGTG--A--TT---C-TAACCGTAGCCTTAGGCGGAGACAGCGGA 108
||||||||||||||||||| | || | |||||||||| ||||||||||| |||||
Sbjct 57 CCTCGTCTTCTCCGCCGTGACACTTTCCACAAAACCGTAGCCATAGGCGGAGACGGCGGA 116
Query 109 GGTTCAGGTAACACCAAC-ACTATCTATTCACCATGCTCCGACACCCGAATCCAAAGATC 167
|| | ||||||||||| || |||||||| |||||||| |||||| |||||||||||||
Sbjct 117 GG---AAGTAACACCAACAAC-ATCTATTCCCCATGCTCTGACACCAGAATCCAAAGATC 172
Query 168 CGATGGATTCACATTCGGTATCGCATTCTCTTCTCGTCCCTCCTTCTTCATAAACCAAAC 227
||| |||||||||||||| |||||||||||||||||||| || |||||| ||||||||||
Sbjct 173 CGACGGATTCACATTCGGAATCGCATTCTCTTCTCGTCCTTCTTTCTTCTTAAACCAAAC 232
Query 228 GGTTCTTCTCTCTCCCTGTGACCGCCGCCTTTCCCTCGCCGCCATGAATTCACAGT-TCT 286
||||||||||||||||||||||| || |||||||| ||||||||||||||||| | |||
Sbjct 233 GGTTCTTCTCTCTCCCTGTGACCATCGACTTTCCCTTGCCGCCATGAATTCACAATCTCT 292
Query 287 CT 288
||
Sbjct 293 CT 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33014446122
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5