BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44160.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484837 jgi|Araly1|484837|fgenesh2_kg.5__829__AT3G44160.1 2355 0.0
> Ahg484837 jgi|Araly1|484837|fgenesh2_kg.5__829__AT3G44160.1
Length=1549
Score = 2355 bits (1275), Expect = 0.0
Identities = 1477/1569 (94%), Gaps = 36/1569 (2%)
Strand=Plus/Plus
Query 1 AAAAATATCCAAAGCATCAAATCCTTAACCTCTCTGCTAATTCATTCACTCCTgaagaag 60
||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 1 AAAAATATCCAAAGCATCAAATCCTTAACCTCTCTGC-AA---ATTCACTCC------CG 50
Query 61 aagaaagaagaaATAAGTAAATAAAAATTCCTCCTTTTTCTGGTCATTGCTTGTCTAATG 120
||| ||| | || | | ||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 51 AAG-AAG-A-AACT-A--AAA-AAAAACTCCTCCTTTTTCTGGGCATTGCTTGTCTAATG 103
Query 121 CCAATTCCTAAATTGGGTTCTCTTCATGGTTGATTCTTCTCTCATTCCATCGCCATGGGA 180
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 104 CCAATTCCTGTATTGGGTTTTCTTCATGGTTGATTCTTCTCTTATTCCATCGCCATGGGA 163
Query 181 GCTCAGAAGAGTATCCACGCTGGTAGAGCCAAGATTGATGTTAATGTGGACTTCACTCAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 164 GCTCAGAAGAGTATCCACGCTGGTAGAGCCAAGATTGATGTTAATGTGGATTTCACTCAC 223
Query 241 AAGCTTTGTACTTCTTTAATGTTTCCTGCTTTCAGGGACACTAGCAGTCCTCTTTCTCTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AAGCTTTGTACTTCTTTAATGTTTCCTGCTTTCAGGGACACTAGCAGTCCTCTTTCTCTA 283
Query 301 GTGATT----GGC-AG----CCTCTGTATCAAACATCCAAATTTGTTTGGAGGAAGCGAG 351
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GTGATTGGCAGGCAAGTTTTCCTCTGTATCAAACATCCAAATTTGTTTGGAGGAAGCGAG 343
Query 352 AAGCTTGATGTATCATGGGATAAAGGATTGTATGATTCCAATGTACTTGTGGCTTTTAGG 411
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 344 AAGCTTGATGTTTCATGGGATAAAGGGTTGTATGATTCCAATGTACTGGTGGCTTTTAGG 403
Query 412 AGACCTAGACCTGAATGGCGTCCACAACAGTGTTTCTTCATACAGCATTCTCTCTCACCC 471
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||
Sbjct 404 AGACCTAGACCTGAATGGCGTCCGCAACAGTGCTTCTTCATACAGCATTCTCTTTCGCCC 463
Query 472 GAGATAGGGGTCCACGGCACCCCAGTCGACAACTTTTCTCGGTCAGGAAGTGGAGGTGTA 531
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 464 GAGATAGGGGTCCATGGCACCCCAGTTGACAACTTTTCTCGGTCAGGAAGTGGAGGTGTA 523
Query 532 AATCTGTCTAAATTGGCTCTTGGTTTAGACTTGAGTGAGCCAGCGAGTTCAAAATGGAGC 591
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AATCTTTCTAAATTGGCTGTTGGTTTAGACTTGAGTGAGCCAGCGAGTTCAAAATGGAGC 583
Query 592 AGCACAACCAGCATAAAGTTTGAGCATGTGCGTCCGATTAACGATGATGGACGCGCGATA 651
|||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 584 AGCACAACCAGCGTAAAGTTTGAGCATGTGCGCCCAATTAACGATGACGGACGCGCGATA 643
Query 652 ACCAGAGATCTGGACGGATTTCCTATAACATGCAGTGGAAATACCCATGACAGTATGGTA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ACCAGAGATCTGGACGGATTTCCTATAACATGCAGTGGAAATACCCATGACAGTATGGTA 703
Query 712 GTTTTAAAGCAAGAATCCCGGTTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGC 771
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 704 GTTTTAAAGCAAGAATCCCGATTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGC 763
Query 772 ATGCAAATAGAACAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAA 831
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ATGCAAATAGAGCAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAA 823
Query 832 TTTGTTGCATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTTGTTGCATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGT 883
Query 892 GGTTCAATTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GGTTCAATTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGT 943
Query 952 GTTCGCGGATATGGTGAGGGTGCTGTTGGATCCGGTCGGTCATGCCTTGTTGCCAATACA 1011
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 944 GTTCGGGGATATGGTGAGGGTGCTGTTGGATCCGGGCGGTCATGCCTTGTTGCTAATACA 1003
Query 1012 GAATTGGCGTTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACA 1071
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 GAATTGGCGGTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACA 1063
Query 1072 GACCTAGGCTCAAGCCGCCTTGTCCCCGGAAACCCTTCAATGAGACAAGGGAAGCCAGGG 1131
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1064 GACCTAGGCTCAAGCCGCCTTGTCCCTGGAAACCCTTCGCTGAGACAAGGGAAGCCAGGG 1123
Query 1132 TTTGGGTATGGATTCGGATATGGGCTACGGTTCAAGTCTCCATTGGGTCACCTTCAGGTT 1191
| |||||| ||||| || ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1124 TATGGGTACGGATTTGGGTATGGACTACGGTTCAAGTCTCCATTGGGACACCTTCAGGTT 1183
Query 1192 GACTATGCCATAAATGCTTTCAACCAGAAGACTCTTTACTTCGGTGTCACCAATCTTGCT 1251
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GACTATGCCATGAATGCTTTCAACCAGAAGACTCTTTACTTCGGTGTCACCAATCTTGCT 1243
Query 1252 TCATCAACATAGTCAAATAGAATAAAGCAATCAAGAAAAGCACATATTCAAT-GTCTTGA 1310
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1244 TCATCAACATAGTCAAATAGAATAAAGCAATCAAGAAAAGCACATATTTAAAAGTCTTGA 1303
Query 1311 TTCAAAGATATATTTGTGTTTGCGTTGGAACCAGAAACGCCACAAGATGAGGCAAACACA 1370
|||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TTCATGGATACATTTGTCTTTGCGTTGGAACCAGAAACGCCACAAGATGAGGCAAACACT 1363
Query 1371 GTCCAAGGAGAAGCTGTATAT-GACAGAGATCTTGAGAAGATAAATGTAGTGTTGTCATT 1429
| ||||||||||||||| ||| |||| |||||||||||||| ||||| |||||||||| |
Sbjct 1364 GGCCAAGGAGAAGCTGT-TATTGACAAAGATCTTGAGAAGAGAAATGAAGTGTTGTCACT 1422
Query 1430 AGAAATCA----TGTAATATTACACGGG-TATAAGTTTTCATTGTTTTGGTATATACAGC 1484
|||||||| |||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1423 AGAAATCAGACATGTAATATTACA-GGACTATAACTTTTCATTGTTTTGGTATATACAGC 1481
Query 1485 TACCAGAGTTTTGTCTGAAAAGCTGCAGGTTTCATAGAGAAGAGAACACACATTTGATTT 1544
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1482 TGCCAGAGTTTTGTCTGAAA-GCTGCAGGTTTCATAGAGAAGAGAACACACATTTGATTC 1540
Query 1545 GATGGTGTT 1553
|||||||||
Sbjct 1541 GATGGTGTT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5