BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44170.1

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484839 jgi|Araly1|484839|fgenesh2_kg.5__831__AT3G44170.1          715    0.0  


> Ahg484839 jgi|Araly1|484839|fgenesh2_kg.5__831__AT3G44170.1
Length=462

 Score =  715 bits (387),  Expect = 0.0
 Identities = 437/462 (95%), Gaps = 0/462 (0%)
 Strand=Plus/Plus

Query  3    GAGGATGAATCACAAAACCCTAGTTACAAATTTTGTCATCTTTCTCCTCGTACAAATCTC  62
            ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  1    GAGGATGAATCCCAAAACCCTAGTTACAAATTTTGTCATCCTTCTCCTTGTACAAATCTC  60

Query  63   AAACTTATCATTAGAGGTAAATTCGTTAAGTGCGTACAACAAGAAAGACTATAGATCAGA  122
            |||||||||||||||||| || |||||| |||| ||| ||||||||||||||| ||||||
Sbjct  61   AAACTTATCATTAGAGGTTAACTCGTTACGTGCCTACCACAAGAAAGACTATACATCAGA  120

Query  123  ATTTAAGGTACGGCCAAATACGGTTGTACGAATGGTCATCACCAACGATCTATTTGGTGT  182
            ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTTAAGGTAAAGCCAAATACGATTGTACGAATGGTCATCACCAACGATCTATTTGGTGT  180

Query  183  AAAGAATGGAAACGCGGGTTTTGTATGCGCAAAAGGTGGTAATAAGGTATGGAAGAGGAG  242
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct  181  CAAGAATGGAAACGCGGGTTTTGTATGCGCAAAGGGTGGTAACAAGGTATGGAAGAAGAG  240

Query  243  CAAACCAGGAGACCGTTATGTCGTGGTCGAGTTTAAGTATGATGGTAAGATGAGGCACAC  302
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAAACCAGGAGACCGGTACGTCGTGGTCGAGTTTAAGTATGATGGTAAGATGAGGCACAC  300

Query  303  GTTCACGCATTGCCATCTCCGTTCTAATTTCGGGTTTGTCAACTTCCCAGTTAGCGTTCA  362
            ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  301  GTTCACGCACTGCCATCTCCGTTCTAATTTCGGATTTGTCAACTTCCCGGTTAGCGTTCA  360

Query  363  TCCTGACACATCTGCTCAGTGTTACCCTAGCTACGTTTGTGGTTACTCGGTTCGGAAAGA  422
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  361  TCCGGACACATCTGCTCAGTGTTACCCTAGCTACGTTTGTGGTTACTCGGTTCGAAAAGA  420

Query  423  TGGGGTTTTTTACAAGCCTGAGAAGAAGCTTTATCGATGGAA  464
             || ||||||||||||||||||||||||||||||||||||||
Sbjct  421  CGGCGTTTTTTACAAGCCTGAGAAGAAGCTTTATCGATGGAA  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16941081516


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5