BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44190.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484840 jgi|Araly1|484840|fgenesh2_kg.5__832__AT3G44190.1 1977 0.0
Ahg941712 jgi|Araly1|941712|scaffold_602256.1 918 0.0
> Ahg484840 jgi|Araly1|484840|fgenesh2_kg.5__832__AT3G44190.1
Length=1364
Score = 1977 bits (1070), Expect = 0.0
Identities = 1273/1367 (93%), Gaps = 29/1367 (2%)
Strand=Plus/Plus
Query 12 ACCACGCCAGGATCCTTCCGCCGTCGGCGACGTCGCTCCTGACGTCACCTCAACACGTAA 71
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ACCACGGCAGGATCCTTCTGCCGTCGGCGACGTCGCTCCTGACGTCACCTCAACACGTTA 60
Query 72 ACCACACAATTAAG-TTT-ATTCCTCTCTCTCTCCGTCAACTTAAACCGGTGTTTGTATA 129
|||||||||||||| ||| ||| | |||||||||||| |||||||||| | || |
Sbjct 61 ACCACACAATTAAGTTTTAATT-C-CTCTCTCTCCGTAAACTTAAACC---G---GT-T- 110
Query 130 TAAATCTGATTGATATAGAAATCGAAACTCAAATTGGAGAACATTCGAGAAGCTTTGGAT 189
| | || | |||| | |||||| ||||||||||| ||| |||||||||||||
Sbjct 111 T---T-TG--T-ATAT----A--GAAACTGAAATTGGAGAAGATTTGAGAAGCTTTGGA- 156
Query 190 TTTTGAATCACGAAGACATGGAAAAAACAGAATCTGTATCAGGAAAGGGGAAGAGAGTGA 249
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 157 -TTTGAATCGCGAAGACATGGAAAAAACCGAATCTGAATCAGGAAAGGGGAAGAGAGTGG 215
Query 250 TTGTTATCGGCGGCGGAATCGCCGGCTCTCTCGCTTCGAAATTTCTTCAATTCGATTCCG 309
| ||||||||||||||||||||||||||| | || || |||||||||||||||||||| |
Sbjct 216 TGGTTATCGGCGGCGGAATCGCCGGCTCTTTAGCCTCCAAATTTCTTCAATTCGATTCTG 275
Query 310 ATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATTATTTGGGCAAGTTTAAGGTCAA 369
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 276 ATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATCATTTGGGCAAGTTTAAGGTCAA 335
Query 370 TGGTAGAGCCAGCTTTTGCTGAAAGATCGGTGATAAACCACAAGAAGTATTTACAAAATG 429
|||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 336 TGGTGGAACCATCTTTTGCTGAAAGATCGGTGATAAACCATAAGAAGTATTTACAAAATG 395
Query 430 GTCGTGTTGTGACTTCTCCAGCGGTTAATATCACAGACACCGATGTTTTGACCGCGGATG 489
|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 396 GTCGCGTTGTGACTTCTCCAGCTGTTAATATCACAGACACCGATGTTGTGACCGCGGATG 455
Query 490 GTCTTGTCTTTGGGTATGATTATCTTGTTATTGCTACTGGTCACAATGATGTGCTTCCTA 549
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 456 GGCTTGTCTTTGGGTATGATTATCTTGTCATTGCTACGGGTCACAATGATGTGCTTCCTA 515
Query 550 AAACTAGGCAAGAGAAGTTATCTCAATACCAAACAGAACATGAGAAGATCAAGTCATCTG 609
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 516 AAACTAGGCAAGAGAAGTTATCTCAATACCAAGCTGAATATGAGAAGATCAAGTCATCTG 575
Query 610 AGTCGATTCTGATTGTTGGTGGAGGTCCGTCGGGTGTGGAGCTCGCTGCGGAGATAGCTG 669
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 576 AATCGATTCTGATTGTTGGTGGAGGTCCATCGGGTGTGGAGCTTGCTGCGGAAATAGCTG 635
Query 670 TCGATTTCCCTGAGAAAAAGGTTACTATAGTACACAATGGACCGAGATTGCTGGAATTTG 729
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TTGATTTCCCAGAGAAGAAGGTTACTATAGTACACAATGGACCGAGATTGCTGGAATTTG 695
Query 730 TTGGTCAGAAAGCTGCAGACAAGGCATTAGACTGGATGAAGTCCAAGAGAGTTGAAGTGA 789
||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 696 TTGGTCAAAAAGCTGCAGACAAGGCATTTGACTGGATGAAATCTAAGAGAGTTGAAGTGA 755
Query 790 TATTGAACCAAAGGGTTGATTTGAGTTCAGCTTCAGATGGGAGTAAAACGTACCGAACAT 849
|||||||||||||||| ||||||||||||||||| || |||| |||||| ||||||||||
Sbjct 756 TATTGAACCAAAGGGTGGATTTGAGTTCAGCTTCGGACGGGAATAAAACATACCGAACAT 815
Query 850 CGGGTGGAGAGACGATACACGCGGATTGTCACTTCCTCTGTACTGGAAAACCTTTGTCTT 909
| ||||| |||| ||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 816 CAGGTGGGGAGATGATACACGCAGATTGCCACTTCCTTTGCACTGGAAAACCTTTGTCTT 875
Query 910 CAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTTGGATGGCAAAGGAAGGCTTATGG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTTGGATGGCAAAGGAAGGCTTATGG 935
Query 970 TCGATGAGTACTTGAGAGTTAAGGGTCGCAAGAATGTATTCGCTATTGGTGATATTACTG 1029
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 936 TCGATGAGTACTTGAGAGTTAAGGGTCGCAAGAATGTATTCGCAATTGGTGATATTACTG 995
Query 1030 ATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGAAACACGCCTCTGTAGCTACAAAGA 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 ATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGAAACACGCCTCTGTAGCTACAAAGA 1055
Query 1090 ACATAAAGTTGTTGATGTCTGGTGGGAACGAGAAGAAGATGTCGACTTACAAGCCTGGTC 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ACATAAAGTTGTTGATGTCTGGTGGGAACGAGAAGAAGATGTCGACTTACAAGCCTGGTC 1115
Query 1150 CGGACATTGCCATAATATCTTTAGGAAGAAAGGACTCGGTTGCTCAGTTCCCATTCATGA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CGGACATTGCCATAATATCTTTAGGAAGAAAGGACTCGGTTGCTCAGTTCCCATTCATGA 1175
Query 1210 CAGTCTCGGGTTGCATACCTGGTTTGATCAAATCTAAGGATCTGTTTGTCGGGAAGACGA 1269
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1176 CAGTCTCGGGTTGCATACCTGGTTTGATCAAATCTAAGGATCTGTTTGTGGGGAAGACGA 1235
Query 1270 GGAAGGCAAGAGGTCTGGATCCTAACCTTGTGGAGCCTTGAGTGATTGTGCTTATCTTCA 1329
||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||| ||
Sbjct 1236 GGAAGGCAAGAGGGCTGGATCCTAATATTGTGGAGCCTTGAAAGATTGTGTTTATCTGCA 1295
Query 1330 TGATGAGATTCTTCTTGTGCAGGCGCATTTCGTCGTTT-ATTTCATC 1375
||||||||||||||||||||||| |||||| || |||| ||||||||
Sbjct 1296 TGATGAGATTCTTCTTGTGCAGGTGCATTTGGT-GTTTTATTTCATC 1341
> Ahg941712 jgi|Araly1|941712|scaffold_602256.1
Length=1139
Score = 918 bits (497), Expect = 0.0
Identities = 892/1080 (83%), Gaps = 38/1080 (4%)
Strand=Plus/Plus
Query 240 AAGAGAGTGATTGTTATCGGCGGCGGAATCGCCGGCTCTCTCGCTTCGAAATTTCTTCAA 299
||||||||| | || ||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 55 AAGAGAGTGGTGGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAG 114
Query 300 TTCGATTCCGATCTCACCCTCATTGATCCGAAGGAGTATTTTGAGATTATTTGGGCAAGT 359
|||||| | ||| |||| ||||| |||||||||||||| |||||||||| |||||||||
Sbjct 115 TTCGATGCTGATGTCACACTCATCGATCCGAAGGAGTACTTTGAGATTACATGGGCAAGT 174
Query 360 TTAAGGT-CAATGGTAGAGCC--AGCTTTTGCTGAAAGATCGGTGATAAACCACAAGAAG 416
|| || | ||| ||| ||||| || |||||||||||| | ||||| ||||||||| ||
Sbjct 175 TTGAGATCCAA-GGTGGAGCCTAAG--TTTGCTGAAAGAACAGTGATTAACCACAAG-AG 230
Query 417 -TA-TTTACAA-AATGGTCGTGTTGTGACTTCTCCAGCGGTTAATATCACAGACACCGAT 473
|| || | || || ||||||||||| |||||||| ||| | ||||||||||| || |||
Sbjct 231 TTACTTGA-AACAA-GGTCGTGTTGTAACTTCTCCGGCGATCAATATCACAGAGACTGAT 288
Query 474 GTTTTGACCGCGGATGG-TCTTGTCTTTGGGTATGATTATCTTGTTATTGCTACTGGTCA 532
||| |||| | ||||| || ||| |||| ||||||||||||||||||||||| |||||
Sbjct 289 GTTATGACTGAAGATGGATC-TGTGATTGGATATGATTATCTTGTTATTGCTACAGGTCA 347
Query 533 CAATGA-TGTGCTT-CCTAAAACTAGGCAAGAGAAGTTATCTCAATACCAAACAGAACAT 590
|||||| | || || ||||||||||| ||||||||| | || || |||||| | ||| ||
Sbjct 348 CAATGACT-TG-TTCCCTAAAACTAGACAAGAGAAGCTGTCACATTACCAAGCTGAATAT 405
Query 591 GAGAAGATCAAGTCATCT-GAGTCGA-TTCTGATTGTTGGTGGAGGTCCGTCGGGTGTGG 648
||||||||||| || ||| || || | || ||||||||||||||||||| || |||||||
Sbjct 406 GAGAAGATCAAATCTTCTGGA-TC-AGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGG 463
Query 649 AGCTCGCTGCGGAGATAGCTGTCGATTTCCCTGAGAAAAAGGTTACTATAGTACACAATG 708
|||| |||||||| || || || ||||| || ||||| ||||||||| | || || || |
Sbjct 464 AGCTTGCTGCGGAAATCGCGGTTGATTTTCCGGAGAAGAAGGTTACTCTGGTGCATAAAG 523
Query 709 GACCGAGATTGCTGGAATTTGTTGGTCAGAAAGCTGCAGACAAGGCAT-TAGACTGGAT- 766
|||| |||||||| ||||||||||| || |||||||| || || |||| | |||||| |
Sbjct 524 GACCAAGATTGCTTGAATTTGTTGGACAAAAAGCTGCTGATAAAGCATCT-GACTGGTTA 582
Query 767 GAAGTCCAAGAGAGTTGAAGTGATATTGAACCAAAGGGTTGATTTGAGTTCAGCTTCAGA 826
||| || |||| ||| |||||||||||||| ||| || ||||||||||||||||||||
Sbjct 583 GAA-TCAAAGAAAGTGGAAGTGATATTGAATCAATCTGTGGATTTGAGTTCAGCTTCAGA 641
Query 827 TGGGAGTAAAACGTACCGAACATCGGGTGGAGAGACGATACACGCGGATTGTCACTTCCT 886
||| | ||||| ||||| || || || ||||| || ||||| || |||||||| |||||
Sbjct 642 TGGAAACAAAACATACCGGACTTCAGGAGGAGAAACTATACATGCAGATTGTCATTTCCT 701
Query 887 CTGTACTGGAAAACCTTTGTCTTCAGAATGGCTAAAAGGAACTGTTCTGAAAGATAACTT 946
|||| ||| |||||||||||||| ||||||| || ||||||||||||||||||| |||
Sbjct 702 CTGTGTTGGGAAACCTTTGTCTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTT 761
Query 947 GGATGGCAAAGGAAGGCTTATGGTCGATGAGTACTTGAGAGTTAAGGGTCGCAAG-AATG 1005
|||||| ||||||||| |||||||||||||||||||| || ||| |||||| ||| ||||
Sbjct 762 GGATGGTAAAGGAAGGGTTATGGTCGATGAGTACTTGCGAATTAGGGGTCG-AAGCAATG 820
Query 1006 TATTCGCTATTGGTGATATTACTGATGTCCCGGAGATGAAACAAGGCTACATTGCTGAGA 1065
||||||| ||||| ||||| ||| || ||||||||||||||||||| || || || ||||
Sbjct 821 TATTCGCCATTGGAGATATCACTAATATCCCGGAGATGAAACAAGGATATATAGCGGAGA 880
Query 1066 AACACGCCT-CTGTAGCT-ACAAAGAACATAAAGTTGTTGATGTCTG-GTGGGAACGAGA 1122
|| | || ||| | | ||| ||||||||| | ||||||| | | || || |||
Sbjct 881 CTCATG-CTAATGTGGTTGTGAAA-AACATAAAGGTAATGATGTC-GAGCGGTAAAAAGA 937
Query 1123 AGAAGATGTCGACTTACAAGCCTGGTCCGGACATTGCCATAATATCTTTAGGAAGAAAGG 1182
|||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 938 AGAAGATGTCGACTTACAAGCCTGGTCCAGAGATGGCCATTGTATCTTTAGGAAGAAAGG 997
Query 1183 ACTCGGTTGCTCAGTTCCCATTCATGACAGTC-TCGGGTTGCATACCTGGTTTGATCAAA 1241
||||||| |||||||| || || | ||||| | || |||| | ||||||||||||||
Sbjct 998 ACTCGGTGGCTCAGTTTCCGTTTGTAACAGTTGTTGG-TTGCCTCCCTGGTTTGATCAAG 1056
Query 1242 TCTAAGGATCTGTTTGTCGGGAA-GACGAGGAAGGCAAGAGGTCTGGATCCTAACCTTGT 1300
|| |||||||||||||| ||||| |||||||||||||||||| || ||||||| |||||
Sbjct 1057 TCAAAGGATCTGTTTGT-GGGAAAGACGAGGAAGGCAAGAGGACTAAATCCTAAACTTGT 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5