BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44200.1
Length=3328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484841 jgi|Araly1|484841|fgenesh2_kg.5__833__AT3G44200.1 5077 0.0
> Ahg484841 jgi|Araly1|484841|fgenesh2_kg.5__833__AT3G44200.1
Length=3272
Score = 5077 bits (2749), Expect = 0.0
Identities = 3148/3330 (95%), Gaps = 69/3330 (2%)
Strand=Plus/Plus
Query 1 ACTCTGCAACAAGTGAACTAAACACagaagaagaagaagaagaagacgagacgacga-at 59
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 1 ACTCTGCAACAAGTGAACTAAACACAGAAGAAGAAGAAGAAGAAGA--AGAAGACGAGA- 57
Query 60 cca-gaa-acagagagagagggagagagCTTTGAATATCTT-ATTGTACACAATCTTCTT 116
| | ||| |||| | | | |||||| ||||||||||||| |||||||||||||||||
Sbjct 58 CGACGAATCCAGA-A-ATA--GAGAGACCTTTGAATATCTTCTTTGTACACAATCTTCTT 113
Query 117 CGCATGGAAGATTTCTGTTTCTCGTCACTCTGATATCCAAAAATGTCTGGATCTGATTTT 176
||||||| | | | | | | |||||||||||||||||||| ||||||
Sbjct 114 CGCATGG-A-A-----G------G----T-T--TATCCAAAAATGTCTGGATCCGATTTT 153
Query 177 GATTTCGCGGCGTTTCGAGTTCAATGCTAAAACATCGAAGCGGTTTCGAATCTCTGA-GA 235
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||
Sbjct 154 GATTTCGCGGCGTTTCGAGTTCAATGCTAAACCATCG-AGCGGTTTCGAATCTCT-AGGA 211
Query 236 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAACTTAAGATTACGTTGAAGAGAAGCAAG 295
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 212 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAAATTAAGATTACGTTGAAGAGAAGCAAG 271
Query 296 -TTCTCTTAAATCGCAACTTTGGAGAAGTTTCGTTGTTGGTTTTTGGTAAAGCGATGGAG 354
||||||||||||| | || | ||||||||||||||||||||
Sbjct 272 TTTCTCTTAAATCG---C-------AA----C--------TTTTTGGTAAAGCGATGGAG 309
Query 355 TCACGAATGGATCAGTACGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 414
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TCACGAATGGATCAGTATGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 369
Query 415 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 429
Query 475 AGACAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCAAGAGTT 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 430 AGGCAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCGAGAGTT 489
Query 535 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 549
Query 595 ATTGTCACTGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAAAAGTCAAATGGT 654
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 550 ATTGTCACTGGATACTGTGAAGGAGGAGACAGGGCTGAGTTGATGAAAAAGTCAAATGGT 609
Query 655 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 669
Query 715 TATCTGCATTCTAACTATGTTCTACATCGGGATCTAAAGTGTTCCAACATTTTCCTTACA 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 670 TATCTGCATTCTAACTATGTTCTACATCGTGATCTAAAGTGTTCCAACATTTTCCTTACA 729
Query 775 AAAGATCAAGATGTTCGCCTTGGGGACTTTGGTCTTGCCAAAACTTTGAAGGCGGATGAC 834
||||||||||| || |||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 730 AAAGATCAAGACGTCCGCCGTGGGGACTTTGGGCTTGCCAAAACATTGAAGGCGGATGAC 789
Query 835 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCGGAACTGCTTGCTGATATC 894
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 790 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAACTGCTTGCTGATATC 849
Query 895 CCTTATGGTTTTAAGTCAGATATCTGGTC-CTTAGGCTGTTGTATATATGAGATGGCTGC 953
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 850 CCTTATGGTTTTAAGTCTGATATCTGGTCACTT-GGCTGTTGTATATATGAGATGGCTGC 908
Query 954 GTATCGACCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 1013
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GTATCGGCCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 968
Query 1014 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1028
Query 1074 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATCT 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1029 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATTT 1088
Query 1134 GCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAA 1193
|||||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||||
Sbjct 1089 GCAGCCATATGTAGAGCAGTACCGTCCAGCCCTGTCTGCAGCGTCTATAACTCCAGAAAA 1148
Query 1194 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAATAGCAATAGTTC 1253
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1149 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAACAGCAATAGTTC 1208
Query 1254 AAGTGAAAAAGATAACTTCTACGTGAGTGACAAAAATATCCGATATGTGGTTCCAAGTAA 1313
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1209 AAGTGAAAAAGATAACTTCTACGTGAGTGAAAAAAATATCCGATATGTGGTTCCAAGTAA 1268
Query 1314 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTGTCGATGATGAAGACATC-TTAGACC 1372
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1269 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTATCGATGATGAAGACATCCTT-GACC 1327
Query 1373 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGTGTTTCAGCAACAAAACCAGATG 1432
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1328 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGCGTTTCAGCAACAAAACCAGATA 1387
Query 1433 GCCATGGGATTTTAAAGCCCGTACACAGTGACCAGCGACCAGACGTTATTCAACCAAGGC 1492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1388 GCCATGGGATTTTAAAGCCCGTACACAGTGACCATCGACCAGACGTTATTCAACCAAGGC 1447
Query 1493 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1507
Query 1553 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATG 1612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATA 1567
Query 1613 TTGAAACTCCATCAAAGATTCCCAAACTTGGTGACATTGCTCATAGCTCCAAGACTAACG 1672
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1568 TTGAAACTCCATCAAAGATTCCCAAACTCGGTGACATTGCTCATAGCTCCAAGACTAACG 1627
Query 1673 CAAGTACGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACTCCAGGATCAT 1732
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1628 CAAATATGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACACCAGGATCAT 1687
Query 1733 TTCCACCAAAGCATCATATGCCAGTGATTGACTCTTCTCCAAAACTTAAGCCTAGAAACG 1792
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1688 TTCCACCGAAGCATCACATGCCAATGATTGACTCTTCTCCAAAACTTAAGCCTAGAAATG 1747
Query 1793 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCGATGTCAGTTAAGC 1852
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1748 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCAATGTCAGTTAAGC 1807
Query 1853 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCGA 1912
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1808 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCTA 1867
Query 1913 GACAACTAGGAGCAGATATTTCAAATATGGCAGCAAAGGAAACCGCGAAGCTACATCCAT 1972
||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1868 GACAATTAGGAGCAGATATTCCAAATATGGCAGCCAAGGAAACCGCGAAGCTACATCCAT 1927
Query 1973 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTTCATGCTTCTCCTGTGA 2032
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1928 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTCCATGCTTCTCCTGTGA 1987
Query 2033 GTACGACGCCAGAGCCAAAGAGAACCTCTGTTGGATCTGCCAAAGGAATGCAGAGTGAAA 2092
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1988 GTACGACGCTGGAGCCAAAGAGAACCTCTGTTGGATCTTCCAAAGGAATGCAGAGTGAAA 2047
Query 2093 GCAGCAACTCTATCTCGTCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2152
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 GCAGCAATTCTATCTCATCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2107
Query 2153 CCACCCCATATATTGACATGACAGAACATACAACTCCTGATGACCACAGAAGATCCTGTC 2212
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2108 CCACCCCATATGTCGACATGACAGCACATACAACTCCTGATGACCACAGAAGATCCTGTC 2167
Query 2213 ACAGTGAATACTCATATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGTAGAGATG 2272
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2168 ACAGTGAATACTCGTATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGCAGAGAAG 2227
Query 2273 AACATAGCACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCCGGTGTACAAAACA 2332
|||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2228 AACACAGAACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCTGGTGTTCAAAACA 2287
Query 2333 CCATTGCCCATCATCAGCCAGAAAGAGAGCAAGGAAGCTGTCCCACTGTGCTCAAAGATG 2392
||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| ||||||||
Sbjct 2288 CCATTGCCCATCATCAGCCGGAAGGAGAGCAAGGAAGCTCTCCCATTGTGCCCAAAGATG 2347
Query 2393 ATAGTCCTGCAACATTACAGAGCTACGAGCCTAACACATCACAAC-ATCAACACGGTGAT 2451
|||| ||| | |||||||||||||||||||||||| ||||||||| | ||||| ||||||
Sbjct 2348 ATAGCCCTACCACATTACAGAGCTACGAGCCTAACGCATCACAACGA-CAACATGGTGAT 2406
Query 2452 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGACCCGCACCATTGCCTTTG 2511
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2407 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGAGCCGCACCAATGCCTTTG 2466
Query 2512 CATGTTGAACCATCACACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAATGTCT 2571
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2467 CATGTTGAACCATCCCACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAGTGTCT 2526
Query 2572 CAGAACTCAGCTCTTGAGAAGAACAACAGTCATTCCCATCCTCATCCCGTGGTTGATGAT 2631
|||||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||
Sbjct 2527 CAGAACTCAGCTCTTGAGAAGAACAACAACCCTTCCCATCTTCATCCTGTGGTTGATGAT 2586
Query 2632 GTCATACATGTTATTCGCCACAGCAGTTTCCGAGTAGGGAGCGACCAGCCGGTCATGGAA 2691
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2587 GTCATACATGTTATCCGTCACAGCAGTTTCCGGGTAGGGAGCGACCAGCCGGTCATGGAA 2646
Query 2692 AGTGTTGAAGTCGGTGTCCAAAACGTCGATATGGGGAAACTCATAAACGTTGTGAGAGAT 2751
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 2647 AGTGTTGAAGTCGGTGTCCAGAACGTCGACATGGGGAAACTCATAAACGTGGTGAGAGAT 2706
Query 2752 GAAATGGAAGTGAGAAAAGGAGCCACTCCCTCAGAATCACCCACCACAAGATCGATCATC 2811
||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||
Sbjct 2707 GAAATGGAAGTGAGAAAAGTAGCCACTCCCTCTGAATCACCCACCACGAGATCAATCATC 2766
Query 2812 TCAGAGCCTGACTCAAGAACCGAGCCTCGTCCTAAAGAACCAGACCCCATCACCAATTAC 2871
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 2767 TCAGAGCCTGACTCAAGAACCGAGCCCCGTCCTGAAGAACCTGACCCCATCACCAATTAC 2826
Query 2872 TCAGAAACAAAGAGCTTTAACTCCTGCTCGGATTCTTCACCAGCTGAGACCAGAACTAAC 2931
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 2827 TCAGAAACAAAGAGCTTTAACTCCTGCTCTGATTCTTCACCAGCTGAGACAAGATCTAAC 2886
Query 2932 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTTAAAGAGACGTTGGACATC 2991
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2887 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTGAAAGAGACGTTGGACATC 2946
Query 2992 AAGTCGTTCAGACAGAGAGCAGAAGCGCTTGAAGGTCTATTGGAACTATCTGCGGATTTG 3051
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2947 AAGTCGTTCAGACAGAGAGCAGAGGCGCTTGAAGGTTTATTGGAACTATCTGCGGATTTG 3006
Query 3052 CTGGAACAGAGCAGGCTCGAAGAGCTAGCCATTGTGTTGCAGCCGTTTGGGAAGAACAAA 3111
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 3007 CTGGAACAGAGCAGGCTCGAAGAGTTAGCCATCGTGTTGCAGCCGTTTGGGAAGAACAAA 3066
Query 3112 GTTTCGCCTCGAGAAACCGCTATTTGGTTGGCCAAGAGTTTGAAAGGAATGATGATCGAA 3171
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3067 GTTTCGCCTAGAGAAACCGCTATTTGGTTGGCAAAGAGTTTGAAAGGAATGATGATCGAA 3126
Query 3172 GACATCAATAATAATAATAGCAGTGGCAGCTCCAGGAATTGTTCATGAAGGTAAATTATC 3231
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 3127 GACATCAATAATAATAATAGCAGTGGAAGCTCAAGGAATTGTTCATGAAGGTAAATTATC 3186
Query 3232 ATACAAGCATTTGCAACCAAACTCTCTTCTGTGTTAC-ttttttt-CTCTATAACATTTA 3289
|||||||||||| |||||||||||| ||||||| ||||||| ||||| ||| ||||
Sbjct 3187 ATACAAGCATTTTCAACCAAACTCTA----GTGTTACATTTTTTTTCTCTAAAACGTTTA 3242
Query 3290 TATTGTCGTAAAATAACAATTCTTTCATTA 3319
||||||| ||||||||||||||||||||||
Sbjct 3243 TATTGTCATAAAATAACAATTCTTTCATTA 3272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125628048473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5