BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44200.1 Length=3328 Score E Sequences producing significant alignments: (Bits) Value Ahg484841 jgi|Araly1|484841|fgenesh2_kg.5__833__AT3G44200.1 5077 0.0 > Ahg484841 jgi|Araly1|484841|fgenesh2_kg.5__833__AT3G44200.1 Length=3272 Score = 5077 bits (2749), Expect = 0.0 Identities = 3148/3330 (95%), Gaps = 69/3330 (2%) Strand=Plus/Plus Query 1 ACTCTGCAACAAGTGAACTAAACACagaagaagaagaagaagaagacgagacgacga-at 59 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 1 ACTCTGCAACAAGTGAACTAAACACAGAAGAAGAAGAAGAAGAAGA--AGAAGACGAGA- 57 Query 60 cca-gaa-acagagagagagggagagagCTTTGAATATCTT-ATTGTACACAATCTTCTT 116 | | ||| |||| | | | |||||| ||||||||||||| ||||||||||||||||| Sbjct 58 CGACGAATCCAGA-A-ATA--GAGAGACCTTTGAATATCTTCTTTGTACACAATCTTCTT 113 Query 117 CGCATGGAAGATTTCTGTTTCTCGTCACTCTGATATCCAAAAATGTCTGGATCTGATTTT 176 ||||||| | | | | | | |||||||||||||||||||| |||||| Sbjct 114 CGCATGG-A-A-----G------G----T-T--TATCCAAAAATGTCTGGATCCGATTTT 153 Query 177 GATTTCGCGGCGTTTCGAGTTCAATGCTAAAACATCGAAGCGGTTTCGAATCTCTGA-GA 235 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || Sbjct 154 GATTTCGCGGCGTTTCGAGTTCAATGCTAAACCATCG-AGCGGTTTCGAATCTCT-AGGA 211 Query 236 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAACTTAAGATTACGTTGAAGAGAAGCAAG 295 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 212 ATCGAAGGAAAACGAAGCGTGTAGGTTAGGGAAATTAAGATTACGTTGAAGAGAAGCAAG 271 Query 296 -TTCTCTTAAATCGCAACTTTGGAGAAGTTTCGTTGTTGGTTTTTGGTAAAGCGATGGAG 354 ||||||||||||| | || | |||||||||||||||||||| Sbjct 272 TTTCTCTTAAATCG---C-------AA----C--------TTTTTGGTAAAGCGATGGAG 309 Query 355 TCACGAATGGATCAGTACGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 414 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 310 TCACGAATGGATCAGTATGAGCTTATGGAACAGATCGGGAGAGGAGCGTTTGGTGCTGCT 369 Query 415 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 ATTTTAGTTCATCATAAAGCTGAGAGAAAGAAGTATGTTTTGAAGAAGATCAGATTAGCT 429 Query 475 AGACAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCAAGAGTT 534 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 430 AGGCAAACGGAACGTTGCCGGAGATCTGCTCATCAAGAGATGTCTTTGATTGCGAGAGTT 489 Query 535 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 CAACATCCTTATATTGTGGAGTTTAAAGAAGCTTGGGTTGAGAAAGGTTGCTATGTTTGT 549 Query 595 ATTGTCACTGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAAAAGTCAAATGGT 654 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 550 ATTGTCACTGGATACTGTGAAGGAGGAGACAGGGCTGAGTTGATGAAAAAGTCAAATGGT 609 Query 655 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 GTTTATTTTCCTGAGGAGAAACTTTGCAAGTGGTTTACTCAATTATTATTAGCTGTTGAG 669 Query 715 TATCTGCATTCTAACTATGTTCTACATCGGGATCTAAAGTGTTCCAACATTTTCCTTACA 774 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 670 TATCTGCATTCTAACTATGTTCTACATCGTGATCTAAAGTGTTCCAACATTTTCCTTACA 729 Query 775 AAAGATCAAGATGTTCGCCTTGGGGACTTTGGTCTTGCCAAAACTTTGAAGGCGGATGAC 834 ||||||||||| || |||| |||||||||||| ||||||||||| ||||||||||||||| Sbjct 730 AAAGATCAAGACGTCCGCCGTGGGGACTTTGGGCTTGCCAAAACATTGAAGGCGGATGAC 789 Query 835 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCGGAACTGCTTGCTGATATC 894 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 790 CTAACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAACTGCTTGCTGATATC 849 Query 895 CCTTATGGTTTTAAGTCAGATATCTGGTC-CTTAGGCTGTTGTATATATGAGATGGCTGC 953 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 850 CCTTATGGTTTTAAGTCTGATATCTGGTCACTT-GGCTGTTGTATATATGAGATGGCTGC 908 Query 954 GTATCGACCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 1013 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 GTATCGGCCTGCTTTCAAAGCTTTTGATATGGCAGGGCTTATAAGCAAGGTTAATCGCTC 968 Query 1014 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 969 CTCAATTGGTCCGTTGCCTCCGTGCTATTCACCATCTTTAAAAGCACTCATCAAGGGAAT 1028 Query 1074 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATCT 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1029 GTTAAGGAAGAACCCCGAGTATCGGCCAAACGCCTCCGAGATTTTGAAGCATCCTTATTT 1088 Query 1134 GCAGCCATATGTTGAGCAGTACCGTCCAACGCTTTCTGCGGCGTCTATAACTCCAGAAAA 1193 |||||||||||| ||||||||||||||| | || ||||| |||||||||||||||||||| Sbjct 1089 GCAGCCATATGTAGAGCAGTACCGTCCAGCCCTGTCTGCAGCGTCTATAACTCCAGAAAA 1148 Query 1194 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAATAGCAATAGTTC 1253 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1149 GCCTCTCAATTCTCGCGAGGGTCGGAGGAGTATGGCTGAAAGTCAGAACAGCAATAGTTC 1208 Query 1254 AAGTGAAAAAGATAACTTCTACGTGAGTGACAAAAATATCCGATATGTGGTTCCAAGTAA 1313 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1209 AAGTGAAAAAGATAACTTCTACGTGAGTGAAAAAAATATCCGATATGTGGTTCCAAGTAA 1268 Query 1314 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTGTCGATGATGAAGACATC-TTAGACC 1372 |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 1269 TGGTAATAAAGTCACTGAGACCGATTCAGGTTTTATCGATGATGAAGACATCCTT-GACC 1327 Query 1373 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGTGTTTCAGCAACAAAACCAGATG 1432 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1328 ATGTGCAACAATCAGCTGAAAATGGTAATCTCCAGAGCGTTTCAGCAACAAAACCAGATA 1387 Query 1433 GCCATGGGATTTTAAAGCCCGTACACAGTGACCAGCGACCAGACGTTATTCAACCAAGGC 1492 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1388 GCCATGGGATTTTAAAGCCCGTACACAGTGACCATCGACCAGACGTTATTCAACCAAGGC 1447 Query 1493 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1448 ACCCAAAAACTATCAGAAACATCATGATGGTTTTGAAAGAAGAGAAAGCTCGAGAAAATG 1507 Query 1553 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATG 1612 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1508 GTTCACCCATGAGATCTAATCGAAGTAGACCTTCTAGTGTTCCGACACAGAAGAATAATA 1567 Query 1613 TTGAAACTCCATCAAAGATTCCCAAACTTGGTGACATTGCTCATAGCTCCAAGACTAACG 1672 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1568 TTGAAACTCCATCAAAGATTCCCAAACTCGGTGACATTGCTCATAGCTCCAAGACTAACG 1627 Query 1673 CAAGTACGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACTCCAGGATCAT 1732 ||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1628 CAAATATGCCTATTCCACCATCAAAGCTGGCCTCTGATTCCGCAAGGACACCAGGATCAT 1687 Query 1733 TTCCACCAAAGCATCATATGCCAGTGATTGACTCTTCTCCAAAACTTAAGCCTAGAAACG 1792 ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| | Sbjct 1688 TTCCACCGAAGCATCACATGCCAATGATTGACTCTTCTCCAAAACTTAAGCCTAGAAATG 1747 Query 1793 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCGATGTCAGTTAAGC 1852 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1748 ACAGAATTTCACCTTCTCCTGCTGCTAAACATGAGGCTGAAGAGGCAATGTCAGTTAAGC 1807 Query 1853 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCGA 1912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1808 GTAGGCAAAGAACACCTCCTACTTTGCCAAGAAGAACGTCTTTGATAGCGCACCAGTCTA 1867 Query 1913 GACAACTAGGAGCAGATATTTCAAATATGGCAGCAAAGGAAACCGCGAAGCTACATCCAT 1972 ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1868 GACAATTAGGAGCAGATATTCCAAATATGGCAGCCAAGGAAACCGCGAAGCTACATCCAT 1927 Query 1973 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTTCATGCTTCTCCTGTGA 2032 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1928 CTGTGCCATCAGAGTCTGAAACTAATTCTCATCAATCTCGTGTCCATGCTTCTCCTGTGA 1987 Query 2033 GTACGACGCCAGAGCCAAAGAGAACCTCTGTTGGATCTGCCAAAGGAATGCAGAGTGAAA 2092 ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1988 GTACGACGCTGGAGCCAAAGAGAACCTCTGTTGGATCTTCCAAAGGAATGCAGAGTGAAA 2047 Query 2093 GCAGCAACTCTATCTCGTCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2152 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2048 GCAGCAATTCTATCTCATCGTCGTTGTCCATGCAGGCATTTGAGCTCTGTGATGATGCTT 2107 Query 2153 CCACCCCATATATTGACATGACAGAACATACAACTCCTGATGACCACAGAAGATCCTGTC 2212 ||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2108 CCACCCCATATGTCGACATGACAGCACATACAACTCCTGATGACCACAGAAGATCCTGTC 2167 Query 2213 ACAGTGAATACTCATATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGTAGAGATG 2272 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 2168 ACAGTGAATACTCGTATTCATTTCCAGATATCTCCTCAGAGATGATGATCCGCAGAGAAG 2227 Query 2273 AACATAGCACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCCGGTGTACAAAACA 2332 |||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 2228 AACACAGAACCAGTATGCGGCTGACTGAAATTCCCGACTCTGTTTCTGGTGTTCAAAACA 2287 Query 2333 CCATTGCCCATCATCAGCCAGAAAGAGAGCAAGGAAGCTGTCCCACTGTGCTCAAAGATG 2392 ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||| Sbjct 2288 CCATTGCCCATCATCAGCCGGAAGGAGAGCAAGGAAGCTCTCCCATTGTGCCCAAAGATG 2347 Query 2393 ATAGTCCTGCAACATTACAGAGCTACGAGCCTAACACATCACAAC-ATCAACACGGTGAT 2451 |||| ||| | |||||||||||||||||||||||| ||||||||| | ||||| |||||| Sbjct 2348 ATAGCCCTACCACATTACAGAGCTACGAGCCTAACGCATCACAACGA-CAACATGGTGAT 2406 Query 2452 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGACCCGCACCATTGCCTTTG 2511 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 2407 GACAAATTCACAGTCAAAGAATTCGTCTCCTCTGTTCCCGGAGCCGCACCAATGCCTTTG 2466 Query 2512 CATGTTGAACCATCACACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAATGTCT 2571 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2467 CATGTTGAACCATCCCACCAAGTGAATTCCCACTCGGATAACAAAACAAGCGTAGTGTCT 2526 Query 2572 CAGAACTCAGCTCTTGAGAAGAACAACAGTCATTCCCATCCTCATCCCGTGGTTGATGAT 2631 |||||||||||||||||||||||||||| | |||||||| |||||| |||||||||||| Sbjct 2527 CAGAACTCAGCTCTTGAGAAGAACAACAACCCTTCCCATCTTCATCCTGTGGTTGATGAT 2586 Query 2632 GTCATACATGTTATTCGCCACAGCAGTTTCCGAGTAGGGAGCGACCAGCCGGTCATGGAA 2691 |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2587 GTCATACATGTTATCCGTCACAGCAGTTTCCGGGTAGGGAGCGACCAGCCGGTCATGGAA 2646 Query 2692 AGTGTTGAAGTCGGTGTCCAAAACGTCGATATGGGGAAACTCATAAACGTTGTGAGAGAT 2751 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 2647 AGTGTTGAAGTCGGTGTCCAGAACGTCGACATGGGGAAACTCATAAACGTGGTGAGAGAT 2706 Query 2752 GAAATGGAAGTGAGAAAAGGAGCCACTCCCTCAGAATCACCCACCACAAGATCGATCATC 2811 ||||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||| Sbjct 2707 GAAATGGAAGTGAGAAAAGTAGCCACTCCCTCTGAATCACCCACCACGAGATCAATCATC 2766 Query 2812 TCAGAGCCTGACTCAAGAACCGAGCCTCGTCCTAAAGAACCAGACCCCATCACCAATTAC 2871 |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| Sbjct 2767 TCAGAGCCTGACTCAAGAACCGAGCCCCGTCCTGAAGAACCTGACCCCATCACCAATTAC 2826 Query 2872 TCAGAAACAAAGAGCTTTAACTCCTGCTCGGATTCTTCACCAGCTGAGACCAGAACTAAC 2931 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 2827 TCAGAAACAAAGAGCTTTAACTCCTGCTCTGATTCTTCACCAGCTGAGACAAGATCTAAC 2886 Query 2932 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTTAAAGAGACGTTGGACATC 2991 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2887 TCATTCGTGCCTGAAGAGGAAACAACTCCGACTCCACCTGTGAAAGAGACGTTGGACATC 2946 Query 2992 AAGTCGTTCAGACAGAGAGCAGAAGCGCTTGAAGGTCTATTGGAACTATCTGCGGATTTG 3051 ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2947 AAGTCGTTCAGACAGAGAGCAGAGGCGCTTGAAGGTTTATTGGAACTATCTGCGGATTTG 3006 Query 3052 CTGGAACAGAGCAGGCTCGAAGAGCTAGCCATTGTGTTGCAGCCGTTTGGGAAGAACAAA 3111 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 3007 CTGGAACAGAGCAGGCTCGAAGAGTTAGCCATCGTGTTGCAGCCGTTTGGGAAGAACAAA 3066 Query 3112 GTTTCGCCTCGAGAAACCGCTATTTGGTTGGCCAAGAGTTTGAAAGGAATGATGATCGAA 3171 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3067 GTTTCGCCTAGAGAAACCGCTATTTGGTTGGCAAAGAGTTTGAAAGGAATGATGATCGAA 3126 Query 3172 GACATCAATAATAATAATAGCAGTGGCAGCTCCAGGAATTGTTCATGAAGGTAAATTATC 3231 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 3127 GACATCAATAATAATAATAGCAGTGGAAGCTCAAGGAATTGTTCATGAAGGTAAATTATC 3186 Query 3232 ATACAAGCATTTGCAACCAAACTCTCTTCTGTGTTAC-ttttttt-CTCTATAACATTTA 3289 |||||||||||| |||||||||||| ||||||| ||||||| ||||| ||| |||| Sbjct 3187 ATACAAGCATTTTCAACCAAACTCTA----GTGTTACATTTTTTTTCTCTAAAACGTTTA 3242 Query 3290 TATTGTCGTAAAATAACAATTCTTTCATTA 3319 ||||||| |||||||||||||||||||||| Sbjct 3243 TATTGTCATAAAATAACAATTCTTTCATTA 3272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 125628048473 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5