BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44220.1 Length=790 Score E Sequences producing significant alignments: (Bits) Value Ahg937036 jgi|Araly1|937036|scaffold_501227.1 1026 0.0 > Ahg937036 jgi|Araly1|937036|scaffold_501227.1 Length=663 Score = 1026 bits (555), Expect = 0.0 Identities = 627/663 (95%), Gaps = 0/663 (0%) Strand=Plus/Plus Query 37 CGCTAAACGCAACAGCCAAGATGACTGAGAAGGAATGTGAACATCACCACGACGAAGATG 96 ||||||| ||||| || || ||||| |||||||||||||| ||||||||||||||||||| Sbjct 1 CGCTAAAAGCAACCGCGAAAATGACGGAGAAGGAATGTGAGCATCACCACGACGAAGATG 60 Query 97 AGAAGATGAGGAAACGTATAGGAGCATTGGTGCTTGGGTTTCTCGCAGCTGTTCTTTTCG 156 |||||||| ||||||| |||||||| |||| ||||||||||| |||| ||||||||| | Sbjct 61 AGAAGATGCGGAAACGCATAGGAGCGGTGGTTCTTGGGTTTCTTGCAGTTGTTCTTTTTG 120 Query 157 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCACGTTTTGTTCTTCAAGACG 216 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCGCGTTTTGTTCTTCAAGACG 180 Query 217 CAACCATTTACGCGTTCAACGTTTCTCAGCCTAATTATCTCACTTCTAATCTTCAGGTCA 276 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 CAACCATTTACGCATTCAACGTTTCTCAGCCCAATTATCTCACTTCTAATCTTCAGGTCA 240 Query 277 CTCTTTCTTCACGAAATCCTAATGACAAGATCGGAATCTTCTATGACCGCCTTGACATCT 336 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 241 CTCTTTCTTCTCGAAATCCTAATGACAAGATCGGAATTTTCTATGACCGCCTTGACATTT 300 Query 337 ACGCATCTTACCGCAACCAACAGGTGACGTTGGCGACGTTATTGCCGGCGACTTACCAAG 396 |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 301 ACGCTTCTTACCGTAACCAACAGGTGACGTTGGCGACTTTATTGCCGGCGACTTACCAAG 360 Query 397 GCCACCTTGATGTGACAATATGGTCGCCGTTTCTGTATGGAACAACTGTACCGGTGGCAC 456 |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| Sbjct 361 GCCACCTTGATGTGACCGTATGGTCGCCATTTCTGTATGGAACAACCGTACCGGTGGCAC 420 Query 457 CATATTTTTCTCCGGCGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATCA 516 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 421 CATATTTTTCTCCGGTGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATTA 480 Query 517 AGATCGATGGTTGGGTTAGATGGAAAGTGGGAACGTGGGTCTCCGGTAGGTACCGCCTCC 576 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 481 AGATCGATGGTTGGGTTAGATGGAAAGTAGGAACGTGGGTCTCCGGTAGGTATCGCCTCC 540 Query 577 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCTGGTGATGGTCCAGCCG 636 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 541 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCCGGTGACGGTCCAGCCG 600 Query 637 TGAAGTACCAGCTTGTCCAACGATGTGCCGTTGATGTTTAAACAAAGGGATCATCATTAT 696 | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 TAAAGTACCAGCTTGTTCAACGATGTGCCGTTGACGTTTAAACAAAGGGATCATCATTAT 660 Query 697 TCT 699 ||| Sbjct 661 TCT 663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29164031505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5