BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44220.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937036 jgi|Araly1|937036|scaffold_501227.1 1026 0.0
> Ahg937036 jgi|Araly1|937036|scaffold_501227.1
Length=663
Score = 1026 bits (555), Expect = 0.0
Identities = 627/663 (95%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 37 CGCTAAACGCAACAGCCAAGATGACTGAGAAGGAATGTGAACATCACCACGACGAAGATG 96
||||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1 CGCTAAAAGCAACCGCGAAAATGACGGAGAAGGAATGTGAGCATCACCACGACGAAGATG 60
Query 97 AGAAGATGAGGAAACGTATAGGAGCATTGGTGCTTGGGTTTCTCGCAGCTGTTCTTTTCG 156
|||||||| ||||||| |||||||| |||| ||||||||||| |||| ||||||||| |
Sbjct 61 AGAAGATGCGGAAACGCATAGGAGCGGTGGTTCTTGGGTTTCTTGCAGTTGTTCTTTTTG 120
Query 157 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCACGTTTTGTTCTTCAAGACG 216
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TGGTTTTCTTGGTGTGGGCGATACTTCACCCACACGGACCGCGTTTTGTTCTTCAAGACG 180
Query 217 CAACCATTTACGCGTTCAACGTTTCTCAGCCTAATTATCTCACTTCTAATCTTCAGGTCA 276
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CAACCATTTACGCATTCAACGTTTCTCAGCCCAATTATCTCACTTCTAATCTTCAGGTCA 240
Query 277 CTCTTTCTTCACGAAATCCTAATGACAAGATCGGAATCTTCTATGACCGCCTTGACATCT 336
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 241 CTCTTTCTTCTCGAAATCCTAATGACAAGATCGGAATTTTCTATGACCGCCTTGACATTT 300
Query 337 ACGCATCTTACCGCAACCAACAGGTGACGTTGGCGACGTTATTGCCGGCGACTTACCAAG 396
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 ACGCTTCTTACCGTAACCAACAGGTGACGTTGGCGACTTTATTGCCGGCGACTTACCAAG 360
Query 397 GCCACCTTGATGTGACAATATGGTCGCCGTTTCTGTATGGAACAACTGTACCGGTGGCAC 456
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 361 GCCACCTTGATGTGACCGTATGGTCGCCATTTCTGTATGGAACAACCGTACCGGTGGCAC 420
Query 457 CATATTTTTCTCCGGCGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATCA 516
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CATATTTTTCTCCGGTGTTAAGCCAAGATCTAACGGCGGGGATGGTGCTTCTGAATATTA 480
Query 517 AGATCGATGGTTGGGTTAGATGGAAAGTGGGAACGTGGGTCTCCGGTAGGTACCGCCTCC 576
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 481 AGATCGATGGTTGGGTTAGATGGAAAGTAGGAACGTGGGTCTCCGGTAGGTATCGCCTCC 540
Query 577 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCTGGTGATGGTCCAGCCG 636
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 541 ACGTCAATTGTCCAGCTTACATTACCTTAGCCGGACATTTTTCCGGTGACGGTCCAGCCG 600
Query 637 TGAAGTACCAGCTTGTCCAACGATGTGCCGTTGATGTTTAAACAAAGGGATCATCATTAT 696
| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TAAAGTACCAGCTTGTTCAACGATGTGCCGTTGACGTTTAAACAAAGGGATCATCATTAT 660
Query 697 TCT 699
|||
Sbjct 661 TCT 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5