BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44230.1 Length=615 Score E Sequences producing significant alignments: (Bits) Value Ahg937038 jgi|Araly1|937038|scaffold_501229.1 787 0.0 > Ahg937038 jgi|Araly1|937038|scaffold_501229.1 Length=664 Score = 787 bits (426), Expect = 0.0 Identities = 552/614 (90%), Gaps = 4/614 (1%) Strand=Plus/Plus Query 1 ATGGATTACCAAACATTAGAGATTGAAGACCCAAATGATGTTAACATTCCCGATGCTGAG 60 ||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 21 ATGGATTACGAAACACTAGAGATCGAAGACCCAAATGATCTTAACATTCCCGTTGATGAT 80 Query 61 AACTGCTTTGTGGAACCAGGTTGGGCTGCCCTGTTCACCCTCCTAGCCGTGTACGCTATC 120 |||| ||| ||||| |||||||||||||| | ||| ||||||||||||||||||| ||| Sbjct 81 AACTACTTAGTGGAGCCAGGTTGGGCTGCATTCTTCTCCCTCCTAGCCGTGTACGCCATC 140 Query 121 TTATTTTCCATCGACAATTT-GTTTTCTTGTAAGGCCAACTTCTCAATCCAATCTATATC 179 |||||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||||| Sbjct 141 TTATTTTCCATCGACAATTTAGCTTT-TTGTCAGGCCAACTTCTTAATCCAATCTATATC 199 Query 180 CGTCTCCGCCTCCTCTTCTGAATCGGTGTGGATCGTATATTTCATTGTGAAGAAACCTAG 239 ||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||| Sbjct 200 CGTCTCCTCCTCCTCTGCTGAATCGGTGTGGATTGTATATTTCTTTGTGAAGAAACCTAG 259 Query 240 CTTTATGTGTTCTATCTCTTATGAACGCGAATACGTGTCAGCCAATCTTAGTCCCCTAAA 299 ||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| || Sbjct 260 CTTTAGGTGTTCTATCTCTTATGAACGCGAATATGTGTCGGCCAATCTTGGTCCCCTGAA 319 Query 300 AAGTGCCATTGTAAACGTCTCTCACTACCAACGTTCCAATGGCT-TCACGGATTTTTCCG 358 |||||||||| |||| || |||||| |||||||||||||||| | ||| ||||||| | Sbjct 320 AAGTGCCATTTTAAATGTATCTCACAACCAACGTTCCAATGG-TCACACAGATTTTTTTG 378 Query 359 TGGTTTTCGCGGCTGAGACTGAGGATATTGGACCAGCCAATGGAAGCAACGTTATTTCAG 418 | | ||||| |||||||||||||||||||||||| ||||||||| || ||||| |||||| Sbjct 379 TCGCTTTCGAGGCTGAGACTGAGGATATTGGACCCGCCAATGGAGGCGACGTTTTTTCAG 438 Query 419 GTGTCTACAATCTTAATATTACACTTCTCATGAAGCATAAACAAATTGCCGCGAACAACA 478 ||||| ||||||||||||||||||| ||||||||||| |||||| |||| |||||||||| Sbjct 439 GTGTCCACAATCTTAATATTACACTCCTCATGAAGCACAAACAATTTGCAGCGAACAACA 498 Query 479 AACCAGGACATTTCAATGTTCAGTGTAGAAATTTTACCCTAGTGTTCTCATCGGATATGA 538 ||||||||||||| | |||||||||||||||| ||||| | ||||||||||||||||||| Sbjct 499 AACCAGGACATTTGATTGTTCAGTGTAGAAATCTTACCGTTGTGTTCTCATCGGATATGA 558 Query 539 AGTCGGGAGTGATGCTCGGTGACAAGAAAATTGAATGTCACTCATCTTTTCTAAATTTGA 598 |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 559 AGTCGGGAACAATGCTCGGTGAAAAGAAGATTGAATGTCACTCATCTTTTCTAAATTTGA 618 Query 599 AAGAGCCTTTTCCT 612 |||||| ||||||| Sbjct 619 AAGAGCTTTTTCCT 632 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22492521030 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5