BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44230.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937038 jgi|Araly1|937038|scaffold_501229.1 787 0.0
> Ahg937038 jgi|Araly1|937038|scaffold_501229.1
Length=664
Score = 787 bits (426), Expect = 0.0
Identities = 552/614 (90%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 1 ATGGATTACCAAACATTAGAGATTGAAGACCCAAATGATGTTAACATTCCCGATGCTGAG 60
||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| || |||
Sbjct 21 ATGGATTACGAAACACTAGAGATCGAAGACCCAAATGATCTTAACATTCCCGTTGATGAT 80
Query 61 AACTGCTTTGTGGAACCAGGTTGGGCTGCCCTGTTCACCCTCCTAGCCGTGTACGCTATC 120
|||| ||| ||||| |||||||||||||| | ||| ||||||||||||||||||| |||
Sbjct 81 AACTACTTAGTGGAGCCAGGTTGGGCTGCATTCTTCTCCCTCCTAGCCGTGTACGCCATC 140
Query 121 TTATTTTCCATCGACAATTT-GTTTTCTTGTAAGGCCAACTTCTCAATCCAATCTATATC 179
|||||||||||||||||||| | ||| |||| |||||||||||| |||||||||||||||
Sbjct 141 TTATTTTCCATCGACAATTTAGCTTT-TTGTCAGGCCAACTTCTTAATCCAATCTATATC 199
Query 180 CGTCTCCGCCTCCTCTTCTGAATCGGTGTGGATCGTATATTTCATTGTGAAGAAACCTAG 239
||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 200 CGTCTCCTCCTCCTCTGCTGAATCGGTGTGGATTGTATATTTCTTTGTGAAGAAACCTAG 259
Query 240 CTTTATGTGTTCTATCTCTTATGAACGCGAATACGTGTCAGCCAATCTTAGTCCCCTAAA 299
||||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||
Sbjct 260 CTTTAGGTGTTCTATCTCTTATGAACGCGAATATGTGTCGGCCAATCTTGGTCCCCTGAA 319
Query 300 AAGTGCCATTGTAAACGTCTCTCACTACCAACGTTCCAATGGCT-TCACGGATTTTTCCG 358
|||||||||| |||| || |||||| |||||||||||||||| | ||| ||||||| |
Sbjct 320 AAGTGCCATTTTAAATGTATCTCACAACCAACGTTCCAATGG-TCACACAGATTTTTTTG 378
Query 359 TGGTTTTCGCGGCTGAGACTGAGGATATTGGACCAGCCAATGGAAGCAACGTTATTTCAG 418
| | ||||| |||||||||||||||||||||||| ||||||||| || ||||| ||||||
Sbjct 379 TCGCTTTCGAGGCTGAGACTGAGGATATTGGACCCGCCAATGGAGGCGACGTTTTTTCAG 438
Query 419 GTGTCTACAATCTTAATATTACACTTCTCATGAAGCATAAACAAATTGCCGCGAACAACA 478
||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||
Sbjct 439 GTGTCCACAATCTTAATATTACACTCCTCATGAAGCACAAACAATTTGCAGCGAACAACA 498
Query 479 AACCAGGACATTTCAATGTTCAGTGTAGAAATTTTACCCTAGTGTTCTCATCGGATATGA 538
||||||||||||| | |||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 499 AACCAGGACATTTGATTGTTCAGTGTAGAAATCTTACCGTTGTGTTCTCATCGGATATGA 558
Query 539 AGTCGGGAGTGATGCTCGGTGACAAGAAAATTGAATGTCACTCATCTTTTCTAAATTTGA 598
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 559 AGTCGGGAACAATGCTCGGTGAAAAGAAGATTGAATGTCACTCATCTTTTCTAAATTTGA 618
Query 599 AAGAGCCTTTTCCT 612
|||||| |||||||
Sbjct 619 AAGAGCTTTTTCCT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5