BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44235.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897179 jgi|Araly1|897179|Al_scaffold_0005_1145 726 0.0
> Ahg897179 jgi|Araly1|897179|Al_scaffold_0005_1145
Length=594
Score = 726 bits (393), Expect = 0.0
Identities = 538/606 (89%), Gaps = 18/606 (3%)
Strand=Plus/Plus
Query 1 ATGTCGTGGTCTCAAATTGA-ACCTCGTGATCCTAATTTAACGACTTGGTCTCAAATAAC 59
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCGTGGTCTCAAATT-ACACCTCGTGATCCCAATTTAACGACTTGGTCTCAAAT--T 57
Query 60 ATCATCTCGTGATCCAAATTCAACGACGACTGAAGATGAAGACGGAGATGGCGAGATAGA 119
| ||||||||||||| ||| | | ||||||||||||| ||||||||| || |||| |||
Sbjct 58 A-CATCTCGTGATCCCAATGC-A--ACGACTGAAGATGGAGACGGAGACGGGGAGAGAGA 113
Query 120 CCATCCTATTCGAAATTATTGTAGAATGTACGTAATACTGCTCTATACTTTTGGTTTTTG 179
||||||| ||||||||||||||| |||||||||| |||| ||| ||| ||||||||||||
Sbjct 114 CCATCCTCTTCGAAATTATTGTATAATGTACGTAGTACTACTCGATATTTTTGGTTTTTG 173
Query 180 GTTGTATCTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA 239
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GTTGTTTGTGTTGATAGGGCTAATCAACATTAGCAGATGTTACTTAGACCTATTCGTCGA 233
Query 240 CTCTGTCTCCGTCTCCAACAATACGAACTGGAACGTCTCATTGGTTGCTGATAGTCCTTT 299
||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 234 CTCTGTCTCTGTCTCCAACAACACGAACTGGAGCGTCTCATTGGTTGCTGATAGTCCTTT 293
Query 300 CACATTTTGTCAGTTATCTCTCTTCACAGTTAACGGCCAACTCTTACAAGGAGTCGGCTT 359
|||||||||||| || ||||||||||||||||||||||| ||| | || ||||||| |||
Sbjct 294 CACATTTTGTCAATTGTCTCTCTTCACAGTTAACGGCCATCTCCTCCAGGGAGTCGCCTT 353
Query 360 CACCACGCGGAAGCTAGACAGCA-TAAAAGATGGCCATGTGGTTTGGGACACCGGGGTCA 418
|||||||||||||||||| | | ||||||| ||||||||| |||||||||||| |||||
Sbjct 354 CACCACGCGGAAGCTAGATGG-AGTAAAAGAAGGCCATGTGATTTGGGACACCGCGGTCA 412
Query 419 AGATCATTGCCCGCGTCCAAGCGGGCACTAGTCTTaaaaaaaaGGGATTGTTGAGGGTGA 478
|||||||||||||| | ||| ||| || |||||||| ||||| ||||||||||||||||
Sbjct 413 AGATCATTGCCCGCATTGAAGTGGGTACAAGTCTTAAGAAAAATGGATTGTTGAGGGTGA 472
Query 479 CAG-GCAGTGATTTGCCGGTTAGGTTTCTG-TTGGATCCAGAAGGGAACATGAAAGGATC 536
| | |||||||||||||||| |||||| || |||||||||||| |||| ||||| |||||
Sbjct 473 C-GTGCAGTGATTTGCCGGTAAGGTTT-TGGTTGGATCCAGAACGGAATATGAAGGGATC 530
Query 537 GTTGGTCGGAAACATGAAACGTTGTGAAT-ACTTGTTTAACAGCAGCTTGGAT-AATTCC 594
||||||||||||| ||||||||| ||| |||| ||||| ||||| |||||| ||| ||
Sbjct 531 GTTGGTCGGAAACCGGAAACGTTGC-AATTACTTATTTAAGAGCAGTTTGGATCAAT-CC 588
Query 595 CTTTAG 600
| ||||
Sbjct 589 CGTTAG 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21977619264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5