BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44240.1
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897183 jgi|Araly1|897183|Al_scaffold_0005_1149 773 0.0
Ahg937043 jgi|Araly1|937043|scaffold_501234.1 490 6e-138
> Ahg897183 jgi|Araly1|897183|Al_scaffold_0005_1149
Length=801
Score = 773 bits (418), Expect = 0.0
Identities = 569/643 (88%), Gaps = 5/643 (1%)
Strand=Plus/Plus
Query 1 ATGAGTTTAATAGAAGATTGTCTAAGAAGCTACCGTTTCATTGCAATAGACACAGAGTTT 60
|||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTTTGATCGAAGATTGTCTACGAAACTACCGTTTCATTGCAATCGACACAGAGTTT 60
Query 61 CCATCTACTTTGAGGGAAACTACACAACATGCGACAGATGAGGAACGTTACATGGATATG 120
||| | |||| || ||||| ||||| | || ||||| || |||||||||| || |||
Sbjct 61 CCAGGTTCTTTAAGACAAACTTCACAAGACGCAACAGACGACGAACGTTACAACGACATG 120
Query 121 AGTTTTAGTGTGGACAGAGCAAAATTGATCCAGTTAGGGCTAACTCTGTTCGATATCAAT 180
|| |||||||| |||||| ||||| ||||||||||||| || ||||||||||| ||||||
Sbjct 121 AGCTTTAGTGTCGACAGAACAAAACTGATCCAGTTAGGTCTTACTCTGTTCGACATCAAT 180
Query 181 GGAAGAATTGGAGGAACATGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGA 240
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAAGAATTGGAGGAACTTGGGAAATCAATTTCTCAGATTTCGGAGTTGACGATGCTAGA 240
Query 241 AACGAGAAATCCATTGAGTTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAA 300
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 241 AACGAGAAATCCATCGAGTTCCTTAGGCGCAACGGTCTTGATCTGAGGAAGATTAGAGAA 300
Query 301 GAGGGCATCAGAATCGAGGGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGG 360
|| || ||| ||||| ||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 301 GAAGGTATCGGAATCAAGGGTTTTTTCTCGGAGCTGTTTTGGATTTTGAAGAAGACGAGG 360
Query 361 AGGAATATTACTTGGGTCACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGT 420
| | ||| |||||||||||||||||||||| |||||| ||||| |||||||||||| ||
Sbjct 361 A--A-TATCACTTGGGTCACGTTTCATGGATATTACGATATCGCTTATTTACTCAAGTGT 417
Query 421 TTCACCGGAGAAGCTTTACC-TGTGACTTCAGAGAGGTTTTCTAAAGCGGTCGCGAGAGT 479
||||||||||||| |||||| | | ||||||||||||||||| ||||| || |||||| |
Sbjct 418 TTCACCGGAGAAGATTTACCCTTT-ACTTCAGAGAGGTTTTCGAAAGCAGTGGCGAGAAT 476
Query 480 TCTCGGTTCTGTTTACGATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAG 539
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 477 TCTCGGTTCTGTTTATGATTTGAAAGTCATGGCTGGTCGATGCCTAGGACTAAGTAGCAG 536
Query 540 GCTTGGTTTGGAGACTCTAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCA 599
||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 537 ACTTGGTTTGGAGAGTCTAGCTCATGAGTTGGGACTTAACCGTGTTGGTACTGCACACCA 596
Query 600 CGCCGGTTCCAATAACGAGTTAACGGCGATGGTTTTCGCTAAG 642
||| ||||| ||| ||| |||||||| | |||||||||||||
Sbjct 597 CGCGGGTTCGGATAGCGAATTAACGGCTAGGGTTTTCGCTAAG 639
> Ahg937043 jgi|Araly1|937043|scaffold_501234.1
Length=908
Score = 490 bits (265), Expect = 6e-138
Identities = 389/448 (87%), Gaps = 11/448 (2%)
Strand=Plus/Plus
Query 199 TGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGAAACGAGAAATCCATTGAG 258
||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct 208 TGGGAAATCAATTTCTCAGATTTCGGAGTTGATGATGCTAGAAACGAGAAATCTATCGAG 267
Query 259 TTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAAGAGGGCATCAGAATCGAG 318
|||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||| ||
Sbjct 268 TTCCTTAGACGCAACGGTCTAGATCTGAGGAAGATTAGAGAAGAAGGAATCGGAATCAAG 327
Query 319 GGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGGAGGAATATTACTTGGGTC 378
||||| ||||||||| |||||||||| ||||||||| | ||||||||| || ||||||
Sbjct 328 GGTTTTTTCTCGGAGCTGTTTTGGATTCTGAAGAAG--G-CGAGGAATATCACCTGGGTC 384
Query 379 ACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGTTTCACCGGAGAAGCTTTA 438
|| |||||||||| |||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 385 ACATTTCATGGATATTACGATATCGCTTATTTACTCAAGTGTTTCACCGGAGAAGCTTTA 444
Query 439 CCTGT-GACTTC-AGAGAGGTTTTCTAAAGCGGTCGCGAGAGTTCTCGGTTCTGTTTACG 496
|| || ||| | | |||||||||| |||||||| || ||| |||||||||||||||| |
Sbjct 445 CC-GTATACTCCTA-AGAGGTTTTCGAAAGCGGTGGCCAGAATTCTCGGTTCTGTTTATG 502
Query 497 ATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAGGCTTGGTTTGGAGACTC 556
|| |||| |||||||| |||| | |||||||||||||||| ||||||||||||| ||
Sbjct 503 ATCTGAATGTCATGGCTGGTCAACACCAAGGACTAAGTAGCAGACTTGGTTTGGAGAGTC 562
Query 557 TAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCACGCCGGTTCCAATA-AC 615
|||| |||||||| | ||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 563 TAGCTCATGAGTTAGAACTTAACCGTGTTGGTACTGCACACCATGCCGGTTCGGATAGA- 621
Query 616 GAGTTAACGGCG-ATGGTTTTCGCTAAG 642
|| |||||||| | |||||||||||
Sbjct 622 GAATTAACGGCTCAAA-TTTTCGCTAAG 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26495427315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5