BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44240.1 Length=720 Score E Sequences producing significant alignments: (Bits) Value Ahg897183 jgi|Araly1|897183|Al_scaffold_0005_1149 773 0.0 Ahg937043 jgi|Araly1|937043|scaffold_501234.1 490 6e-138 > Ahg897183 jgi|Araly1|897183|Al_scaffold_0005_1149 Length=801 Score = 773 bits (418), Expect = 0.0 Identities = 569/643 (88%), Gaps = 5/643 (1%) Strand=Plus/Plus Query 1 ATGAGTTTAATAGAAGATTGTCTAAGAAGCTACCGTTTCATTGCAATAGACACAGAGTTT 60 |||||||| || |||||||||||| ||| |||||||||||||||||| |||||||||||| Sbjct 1 ATGAGTTTGATCGAAGATTGTCTACGAAACTACCGTTTCATTGCAATCGACACAGAGTTT 60 Query 61 CCATCTACTTTGAGGGAAACTACACAACATGCGACAGATGAGGAACGTTACATGGATATG 120 ||| | |||| || ||||| ||||| | || ||||| || |||||||||| || ||| Sbjct 61 CCAGGTTCTTTAAGACAAACTTCACAAGACGCAACAGACGACGAACGTTACAACGACATG 120 Query 121 AGTTTTAGTGTGGACAGAGCAAAATTGATCCAGTTAGGGCTAACTCTGTTCGATATCAAT 180 || |||||||| |||||| ||||| ||||||||||||| || ||||||||||| |||||| Sbjct 121 AGCTTTAGTGTCGACAGAACAAAACTGATCCAGTTAGGTCTTACTCTGTTCGACATCAAT 180 Query 181 GGAAGAATTGGAGGAACATGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGA 240 ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 181 GGAAGAATTGGAGGAACTTGGGAAATCAATTTCTCAGATTTCGGAGTTGACGATGCTAGA 240 Query 241 AACGAGAAATCCATTGAGTTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAA 300 |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 241 AACGAGAAATCCATCGAGTTCCTTAGGCGCAACGGTCTTGATCTGAGGAAGATTAGAGAA 300 Query 301 GAGGGCATCAGAATCGAGGGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGG 360 || || ||| ||||| ||||||| ||||||||| |||||||||| |||||||||||||| Sbjct 301 GAAGGTATCGGAATCAAGGGTTTTTTCTCGGAGCTGTTTTGGATTTTGAAGAAGACGAGG 360 Query 361 AGGAATATTACTTGGGTCACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGT 420 | | ||| |||||||||||||||||||||| |||||| ||||| |||||||||||| || Sbjct 361 A--A-TATCACTTGGGTCACGTTTCATGGATATTACGATATCGCTTATTTACTCAAGTGT 417 Query 421 TTCACCGGAGAAGCTTTACC-TGTGACTTCAGAGAGGTTTTCTAAAGCGGTCGCGAGAGT 479 ||||||||||||| |||||| | | ||||||||||||||||| ||||| || |||||| | Sbjct 418 TTCACCGGAGAAGATTTACCCTTT-ACTTCAGAGAGGTTTTCGAAAGCAGTGGCGAGAAT 476 Query 480 TCTCGGTTCTGTTTACGATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAG 539 ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| Sbjct 477 TCTCGGTTCTGTTTATGATTTGAAAGTCATGGCTGGTCGATGCCTAGGACTAAGTAGCAG 536 Query 540 GCTTGGTTTGGAGACTCTAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCA 599 ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 537 ACTTGGTTTGGAGAGTCTAGCTCATGAGTTGGGACTTAACCGTGTTGGTACTGCACACCA 596 Query 600 CGCCGGTTCCAATAACGAGTTAACGGCGATGGTTTTCGCTAAG 642 ||| ||||| ||| ||| |||||||| | ||||||||||||| Sbjct 597 CGCGGGTTCGGATAGCGAATTAACGGCTAGGGTTTTCGCTAAG 639 > Ahg937043 jgi|Araly1|937043|scaffold_501234.1 Length=908 Score = 490 bits (265), Expect = 6e-138 Identities = 389/448 (87%), Gaps = 11/448 (2%) Strand=Plus/Plus Query 199 TGGGAGATCAATTTCTCTGATTTCGGAGTTGACGATGCTAGAAACGAGAAATCCATTGAG 258 ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || ||| Sbjct 208 TGGGAAATCAATTTCTCAGATTTCGGAGTTGATGATGCTAGAAACGAGAAATCTATCGAG 267 Query 259 TTCCTTAGACGCAACGGTCTAGATCTAAGGAAGATTAGAGAAGAGGGCATCAGAATCGAG 318 |||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||| || Sbjct 268 TTCCTTAGACGCAACGGTCTAGATCTGAGGAAGATTAGAGAAGAAGGAATCGGAATCAAG 327 Query 319 GGTTTCTTCTCGGAGATGTTTTGGATGCTGAAGAAGACGAGGAGGAATATTACTTGGGTC 378 ||||| ||||||||| |||||||||| ||||||||| | ||||||||| || |||||| Sbjct 328 GGTTTTTTCTCGGAGCTGTTTTGGATTCTGAAGAAG--G-CGAGGAATATCACCTGGGTC 384 Query 379 ACGTTTCATGGATCTTACGACATCGCCTATTTACTCAAGGGTTTCACCGGAGAAGCTTTA 438 || |||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||| Sbjct 385 ACATTTCATGGATATTACGATATCGCTTATTTACTCAAGTGTTTCACCGGAGAAGCTTTA 444 Query 439 CCTGT-GACTTC-AGAGAGGTTTTCTAAAGCGGTCGCGAGAGTTCTCGGTTCTGTTTACG 496 || || ||| | | |||||||||| |||||||| || ||| |||||||||||||||| | Sbjct 445 CC-GTATACTCCTA-AGAGGTTTTCGAAAGCGGTGGCCAGAATTCTCGGTTCTGTTTATG 502 Query 497 ATTTGAAAGTCATGGCGGGTCGATGTGAAGGACTAAGTAGCAGGCTTGGTTTGGAGACTC 556 || |||| |||||||| |||| | |||||||||||||||| ||||||||||||| || Sbjct 503 ATCTGAATGTCATGGCTGGTCAACACCAAGGACTAAGTAGCAGACTTGGTTTGGAGAGTC 562 Query 557 TAGCGCATGAGTTCGGACTTAACCGTGTTGGTACTGCACACCACGCCGGTTCCAATA-AC 615 |||| |||||||| | ||||||||||||||||||||||||||| |||||||| ||| | Sbjct 563 TAGCTCATGAGTTAGAACTTAACCGTGTTGGTACTGCACACCATGCCGGTTCGGATAGA- 621 Query 616 GAGTTAACGGCG-ATGGTTTTCGCTAAG 642 || |||||||| | ||||||||||| Sbjct 622 GAATTAACGGCTCAAA-TTTTCGCTAAG 648 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26495427315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5