BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44250.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 1912 0.0
Ahg938228 jgi|Araly1|938228|scaffold_502419.1 1648 0.0
Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226 1094 0.0
Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 791 0.0
> Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671
Length=1500
Score = 1912 bits (1035), Expect = 0.0
Identities = 1356/1511 (90%), Gaps = 22/1511 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCC-TCTCTCTTTAATCCTT-TTTAAAA 58
|||||| ||||||||||||||||||||||||| || |||||||||| | ||| |||||||
Sbjct 1 ATGTCTGTCTTCCTTTGTTTCCTCTTACTCTT-CCTTCTCTCTTTAGT-CTTCTTTAAAA 58
Query 59 AGCTTTTACCATCGAAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAA 118
||||||||| |||||||||||||||||||| ||||||| || || |||||||||||||
Sbjct 59 GGCTTTTACCGTCGAAAGGAAAGCTTCCTCCTGGACCTACGGGTCTACCGATCATCGGAA 118
Query 119 ACTTACACCAGCTTGGAAA-ATTGCTTTACAAATCTTTCCACAAAATCTCCCAAGAATAT 177
||||||||||||||||||| || ||| || ||||||| |||||||||||||||||||||
Sbjct 119 ACTTACACCAGCTTGGAAAGGTT-CTTCACCAATCTTTTCACAAAATCTCCCAAGAATAT 177
Query 178 GGACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGTTGTCTCTTCCAAAGAA 237
||||| ||||| ||||||| ||| ||||||||||| || ||||||||||| |||||||||
Sbjct 178 GGACCAGTGGTGCTTCTCCATTTCGGGGTAGTCCCAGTGATCGTTGTCTCCTCCAAAGAA 237
Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGGCA 297
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTAGCCGACCGAAAACAGCC 297
Query 298 GCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGAC 357
||| |||||||||||||||||| ||||||||||||||||| ||||| ||||| || |||
Sbjct 298 GCGGTTGGCTTGTTTACTTACAACTTTAAAGACATTGGTTTCGCTCCCTTTGGTGAGGAC 357
Query 358 TGGAGAGAGATGAGGAAAATCACAACGCTCGAGCTCTTTAGCGTGAAAAAACTTAAATCT 417
||||||||||||||||||||||||| ||| |||||||||||| |||||||||| || |||
Sbjct 358 TGGAGAGAGATGAGGAAAATCACAATGCTTGAGCTCTTTAGCTTGAAAAAACTCAAGTCT 417
Query 418 TTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAATCTGTT 477
|| ||||| |||||||| |||||||| |||||||||||||||||| |||| ||||||| |
Sbjct 418 TTTAGGTACATTAGAGAAGAAGAGAGTGAATTGTTGGTCAAGAAATTATCCAAATCTGCT 477
Query 478 GACGAAACACAAAACTCATCAG-TAGATTTGAGGAAAGTCCTTTTCTCCTTCACGGCTAG 536
||||| || ||| ||||| || || |||||||||||||| ||||||||||||| || ||
Sbjct 478 GACGAGTCAGAAACCTCATTAGTTA-ATTTGAGGAAAGTCTTTTTCTCCTTCACAGCAAG 536
Query 537 CATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG--AT-GC 593
|||||||||||||||||| |||||||| ||||||||||| |||||||||||| || |
Sbjct 537 CATCATTTGTAGACTTGCCTTTGGACAGAACTTCCACCAGCGCGATTTTGTTGATATGGA 596
Query 594 TAGCCTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCGCGTTCGCTGA 653
|| |||||||||| ||| |||| |||||| |||||||||||||||| |||||||| ||
Sbjct 597 GAGAGTGGAAGAGTTGGTGGTTGAGTCAGAGACCAACCTCGGCACCTTGGCGTTCGCCGA 656
Query 654 CTTCTTCCCTGGAGGGTGGCTCATAGATAGGATCTCGGGTCAACATTCAAGGGTGAACAA 713
|||||||||||||| ||||||||||| |||| || ||||| ||||| | |||| ||||
Sbjct 657 TTTCTTCCCTGGAGGATGGCTCATAGACCGGATATCCGGTCATCATTCGACGGTGCACAA 716
Query 714 AGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGATCATTTGAAGACTGG 773
|||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 AGCCTTTTCCAAACTCGCCAATTTCTTTAAACATGTAATCGATGATCATTTGAAGACTGG 776
Query 774 ACAACCTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATATGATCAATAAACCCAC 833
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 777 ---ACCTCAAGATCACTCGGACATCGTTAGTGTCATGTTGGATATGATCAATAAACCAAC 833
Query 834 AAAAGCT-GATTCGTTT-AAAGTCACTTATGACCATCTTAAAGGAGTCATGTCAGATAtt 891
||||| | ||||| ||| ||||||||| |||||||||| |||||||||||||| |||||
Sbjct 834 AAAAG-TCGATTC-TTTCAAAGTCACTGATGACCATCTCAAAGGAGTCATGTCTGATATG 891
Query 892 tttttGGCTGGAGTGAACGGGGGAGCCAACACAATGATATGGACATTGACAGAGCTAAGC 951
||||||||||||||| | |||||||||| ||| || |||||||| ||||||||||||||
Sbjct 892 TTTTTGGCTGGAGTGGATGGGGGAGCCATCACGTTGTTATGGACAATGACAGAGCTAAGC 951
Query 952 AGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACGAGCAA-TGCTTGGACCCAA 1010
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 952 AGACATCCGAGAGTGATGAAGAAACTCCAAGAAGAGATACGAGCAACT-CTTGGACCCAA 1010
Query 1011 CAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAAATTGGTGATGGT 1070
||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||| |
Sbjct 1011 CAAAGAGAGAATCACAGAAGAAGTTCTAGAAAAAGTTGAGTACTTGAAACTGGTGATCAT 1070
Query 1071 GGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGTCCGA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1071 GGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGGCTGA 1130
Query 1131 CATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAATCAACACTTACGC 1190
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 1131 CATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCACATCAACACGTACAC 1190
Query 1191 AATAGGACGGGATCCCAAATATTGGAAACAA-CCTGGTGAGTTCATCCCCGAGAGGTTTC 1249
|||||| | ||||| ||||| |||||| || || ||||||||||||||||||||||||
Sbjct 1191 GATAGGATGTGATCCTAAATACTGGAAA-AATCCCAGTGAGTTCATCCCCGAGAGGTTTC 1249
Query 1250 TTGATAGCCCTATCGATTATAAGGGTCAACATTTTGAGCTATTACCGTTTGGAGCTGGAC 1309
| |||| || |||||| ||||| || ||||||||||||||||| ||||||||| | ||||
Sbjct 1250 TCGATAACCTTATCGAATATAACGGCCAACATTTTGAGCTATTGCCGTTTGGATCCGGAC 1309
Query 1310 GTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGGTCGAGCTCGGGCTTCTTAACC 1369
|||||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1310 GTAGGATCTGTCCTGGAATGACCACGGGGATCACCATCGTCGAGCTCGGCCTTCTTAACC 1369
Query 1370 TTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACTATTGAAGATATTGACATGG 1429
|||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||
Sbjct 1370 TTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTGCAGACATTGACATGG 1429
Query 1430 AAGAAGACGAAGGGTTCGCTATCGCCAAGAAAGTCCCTCTTGTTCTCATACAAACTTCTC 1489
||||||| | ||| |||||||| |||||||||||||||||||| ||||||| ||||||||
Sbjct 1430 AAGAAGATGGAGGTTTCGCTATGGCCAAGAAAGTCCCTCTTGTGCTCATACCAACTTCTC 1489
Query 1490 ATCGCTGGTGA 1500
|||||||||||
Sbjct 1490 ATCGCTGGTGA 1500
> Ahg938228 jgi|Araly1|938228|scaffold_502419.1
Length=1537
Score = 1648 bits (892), Expect = 0.0
Identities = 1318/1520 (87%), Gaps = 43/1520 (3%)
Strand=Plus/Plus
Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCT-CTTTAATCCTT-TTTAAAA 58
|||||||||||||||||||||||||||||||||||||||| | || || ||| || ||||
Sbjct 21 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCCATT-AT-CTTCTTAAAAA 78
Query 59 AGCTTTTACCATCGAAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAA 118
|||||||||| || ||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 79 AGCTTTTACCGTCAAAAGGGAAGCTTCCTCCGGGACCTAAGGGTCTTCCGATCATCGGAA 138
Query 119 ACTTACACCAGCTTGGAAAATTGCTTTACAAATCT-TTCCACAAAATCTCCCAAGAATAT 177
|||| ||||||||||||| ||| ||| |||||||| || ||||||||||| ||| |||||
Sbjct 139 ACTTGCACCAGCTTGGAAGATTTCTTCACAAATCTCTT-CACAAAATCTCTCAAAAATAT 197
Query 178 GGACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGTTGTCTCTTCCAAAGAA 237
||||||||| | ||||||| ||| |||||||||||||| ||| |||||||||||||||||
Sbjct 198 GGACCGGTGATGCTTCTCCATTTCGGGGTAGTCCCTGTGATCATTGTCTCTTCCAAAGAA 257
Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGGCA 297
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 258 GGAGCTGAGGAAGTGCTCAAGACTCATGATCTTGAGACTTGTAGCCGACCTAAGACGGTG 317
Query 298 GCGA-CTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACG- 355
| || | || |||||||||||||| || ||||| |||||||||||||| | ||| || |
Sbjct 318 GGGAGC-GGGTTGTTTACTTACAACTTCAAAGATATTGGTTTTGCTCCGTATGGTGA-GA 375
Query 356 ACTGGAGAGAGATGAGGAAAATCACAACGCTCGAGCTCTTTAGCGTGAAAAAACTTAAAT 415
||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| |
Sbjct 376 ACTGGCGAGAGATGAGGAAAATCGCGGTGCTCGAGCTCTTTAGCCCCAAAAAGCTTAAGT 435
Query 416 CTTTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAATCTG 475
||||||||||||||||||||||||||| ||| || ||||||||| |||||| ||||
Sbjct 436 CTTTCAGGTATATTAGAGAGGAAGAGAACGAGTTTTTGGTCAAGCGGGTATCAAGTTCTG 495
Query 476 -TTGACGAAACACAAAAC-TCATCAG-TAGATTTGAGGAAAGTCCTTTTCT-CCTTCACG 531
| | || |||| ||| ||||||| || |||||||||||||| |||| | |||| ||
Sbjct 496 CTCG-TGAGACAC-CAACTTCATCAGTTA-ATTTGAGGAAAGTCATTTT-TACCTTTGCG 551
Query 532 GCTAGCATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG-- 589
|| |||||||||||||||||||||||||||||||| || | ||||||||||| |
Sbjct 552 GCAAGCATCATTTGTAGACTTGCTTTTGGACAAAA-TT---TC--TGCGATTTTGTCGAT 605
Query 590 ATGCTAG-C-CTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCGCGTT 647
||| || | |||||||||| |||||||| || ||| |||||||||| |||| || ||
Sbjct 606 ATG-GAGACAGTGGAAGAGTTGGTGCTTGAGTCGGAGTCCAACCTCGGTTCCTTGGCTTT 664
Query 648 CGCTGACTTCTTCCCTGGAGGGTGGCTCATAGATAGGATCTCGGGTCAACATTCAAGGGT 707
||||||||||| |||| ||||||| |||||||| ||||||| ||||| ||||| |||||
Sbjct 665 TGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAGGGT 724
Query 708 GAACAAAGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGATCATTTGAA 767
||||||||||||| ||||||||||||||||| | ||| ||| || ||||||||||||||
Sbjct 725 GAACAAAGCCTTTGCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTTGAA 784
Query 768 GACTGG-ACAACCTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATATGATCAATA 826
|| ||| | || | ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 785 GAGTGGAAAAATC-CAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAATA 843
Query 827 AACCCACAAAAGCT-GATTCGTT-TAAAGTCACTTATGACCATCTTAAAGGAGTCATGTC 884
||||||| |||| | | ||| || ||||||||| |||||||||| |||||||| |||||
Sbjct 844 AACCCACTAAAG-TCGGTTC-TTATAAAGTCACCGATGACCATCTCAAAGGAGTTATGTC 901
Query 885 AGATAtttttttGGCTGGAGTGAACGGGGGAGCCAACACAATGATATGGAC-ATTGACAG 943
||| | ||||||||||||||||||| |||| ||| ||||||||||||||| | ||||||
Sbjct 902 GGATGTGTTTTTGGCTGGAGTGAACGCGGGATCCATCACAATGATATGGACGA-TGACAG 960
Query 944 AGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACGAGCAATGCTTG 1003
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| |
Sbjct 961 AGCTAAGCAGGCATCCGAGAGTGATGAAAAAACTTCAAGAAGAGATTCGAGCAACGCTCG 1020
Query 1004 GACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAAATTGG 1063
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1021 GACCCAACAAAGAGAAAATCACAGAAGAAGACCTAGAGAAAGTTGAGTACTTGAAGCTCG 1080
Query 1064 TGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTA 1123
|||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1081 TGATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTGCTCCCAAGACTAACAA 1140
Query 1124 TGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAATCAACA 1183
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 TGTCGGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAGTCAACA 1200
Query 1184 CTTACGCAATAGGACGGGATCCCAAATAT-TGGAAACAACCTGGTGAGTTCATCCCCGAG 1242
||||| | || ||||| ||||||||| | |||| | |||| | |||||||||||||||
Sbjct 1201 CTTACACGATTGGACGTGATCCCAAA-ACCTGGACAGAACCCGACGAGTTCATCCCCGAG 1259
Query 1243 AGGTTTCTTGATAGCCCTATCGATTATAAGGGTCAACATTTTGAGCTATTACCGTTTGGA 1302
|||||| | |||| ||||||||| || |||||||| || ||||||||||| |||||||||
Sbjct 1260 AGGTTTGTCGATAACCCTATCGAATACAAGGGTCAGCACTTTGAGCTATTGCCGTTTGGA 1319
Query 1303 GCTGGACGTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGGTCGAGCTCGGGCTT 1362
|| ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 1320 GCCGGACGTAGGATCTGTCCCGGGATGGCCACGGGGATTACCATCGTCGAGCTCGGCCTT 1379
Query 1363 CTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACTATTGAAGATATT 1422
||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 1380 CTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCTAATGGAATGACCACTAAAGATATT 1439
Query 1423 GACATGGAAGAAGACGAAGGGTTCG-CTATCGCCAAGAAAGTCCCTCTTGTTCTCATACA 1481
|||||||||||||||| || || | | |||||||||||| || |||||| ||| |||
Sbjct 1440 GACATGGAAGAAGACGGAGCTTTTGTC-ATCGCCAAGAAAATCTCTCTTGAGCTCGTACC 1498
Query 1482 AACTTCT-CATCGCTGGTGA 1500
|||| || ||||||||||||
Sbjct 1499 AACT-CTTCATCGCTGGTGA 1517
> Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226
Length=1521
Score = 1094 bits (592), Expect = 0.0
Identities = 1220/1518 (80%), Gaps = 63/1518 (4%)
Strand=Plus/Plus
Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCTTTAATCCTTTTTAAAAAG 60
|||||||||||||| ||||| || || ||||| ||||||| ||| || | |||||||||
Sbjct 1 ATGTCTATCTTCCTATGTTTTCTATTCCTCTTCCCTCTCTTTTTGATTATATTTAAAAAG 60
Query 61 CTTTTACCATCG-AAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAAA 119
||| ||| ||| ||| | ||||||||||||||||||| || |||||||| || |||||
Sbjct 61 ATTTCACCTTCGAAAATG-AAGCTTCCTCCGGGACCTACGGGTCTTCCGATTATAGGAAA 119
Query 120 CTTACACCAGCTTGGAAAATTGCTTTACAAATCT-TTCCACAAAATCTCCCAAGAATATG 178
|| |||||| |||||| ||||||| ||| ||| || ||||| |||| |||| |||
Sbjct 120 TTTGCACCAGTTTGGAAGATTGCTTCACAGTTCTCTT-CACAAGCTCTCTTTAGAACATG 178
Query 179 GACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCA-TCGTTGTCTCTTCCAAAGAA 237
| || ||| | ||||||||||| ||||| |||||||| | |||| |||| ||||| |||
Sbjct 179 GGCCAGTGATGCTTCTCCGTTTCGGGGTCGTCCCTGT-AGTCGTAATCTCCTCCAAGGAA 237
Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGG-C 296
| |||| | ||||| ||||| |||||||| || |||||||| ||||||||||| | || |
Sbjct 238 GCAGCTAAAGAAGTTCTCAAGACTCATGACCTAGAGACTTGCACCCGACCTAAGATGGTC 297
Query 297 AGCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGA 356
| | || || |||||| ||||||| || ||||||||||||||| ||| | |||||| ||
Sbjct 298 A-CAACCGGTTTGTTTTCTTACAACTTCAAAGACATTGGTTTTACTCAATATGGCGAGGA 356
Query 357 CTGGAGAGAGATGAGGAAAA--TCACAACGCTCGAGCTCTTTAG-CGTGAAAAAACTTAA 413
|||| ||||||||| |||| || ||||||||||||||| | |||||||| ||
Sbjct 357 CTGGCGAGAGATGA--AAAAGCTCGTGGGGCTCGAGCTCTTTAGTC-CGAAAAAAC-AAA 412
Query 414 A-TCTTTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAAT 472
| ||||| ||||| || |||||||||||||| || ||| ||||||||||||| |||||||
Sbjct 413 AGTCTTTTAGGTACATCAGAGAGGAAGAGAGTGACTTGCTGGTCAAGAAAATTTCAAAAT 472
Query 473 CTGTTGACGAAACACAAAACTCATCAGTAGATTTGAGG-AAAGTCCTTTTCTCCTTCACG 531
|| | | |||||| |||| || ||| |||||| || |||| |||||||||||||||
Sbjct 473 CTACT--C-AAACAC-AAACCCA--AGTGGATTTG-GGAAAAGCCCTTTTCTCCTTCACC 525
Query 532 GCTAGCATCATT-TGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG- 589
|| | || || | ||||||||| |||||||||||||||| | | || |||||| | |
Sbjct 526 GCCGGTAT-TTTATTTAGACTTGCCTTTGGACAAAACTTCCGCGAGTGTGATTTTATCGA 584
Query 590 -AT-GCTAGCCTGGAAGAGTTAGTG-CTTGA-ATCAGAGGCCAACCTCGGCACCTTCGCG 645
|| | || | |||||| | ||| | || | ||||| ||||| | |||||||| ||
Sbjct 585 TATGGAGAGAGTCGAAGAGCTGGTGAC-AGAGA-CAGAGACCAACGTAGGCACCTTGGCA 642
Query 646 TTCGCTGACTTCTT--CC-CTGG---AGGGTGGCTCATAGATAGGATCTCGGGTCAACAT 699
||| |||||||||| || | || || ||||| ||||| || |||| ||||| | |
Sbjct 643 TTCACTGACTTCTTCCCCACGGGTCTCGGATGGCTTATAGACCGGCTCTCTGGTCAGCGT 702
Query 700 TCAAGGGTGAACAAAGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGAT 759
|| ||| ||||||||| ||||| ||||||||||||||| | | ||||||| || ||||||
Sbjct 703 TCGAGGATGAACAAAGTCTTTTCCAAACTCACCAATTTATTTCAACATGTGATTGATGAT 762
Query 760 CATTTGAAGACTGGACAAC-CTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATAT 818
||||| ||||||| ||||| | | ||||||||| ||| || |||||| ||||||||||||
Sbjct 763 CATTTAAAGACTGAACAACAC-CGAGATCACTCAGACCTCATCAGTGCCATGTTGGATAT 821
Query 819 GATCAATAAACCCACAAAAGCTGATTC-GTTTAAAG-TCACTTATGACCATCTTAAAGGA 876
|||||||||||| || ||| | | | ||| ||| |||||| || ||||| ||||||
Sbjct 822 GATCAATAAACCTAC-AAATAT-AGGCACTTTCAAGATCACTTCCGATCATCTCAAAGGA 879
Query 877 GTCATGTCAG-ATAtttttttGGCTGGAGTGAACG-GGGGAGCCAA-CACAATGATATGG 933
|||||||| | || | |||||||| ||||| |||| ||| | || ||| |||||||||
Sbjct 880 GTCATGTC-GAATGTGTTTTTGGCGGGAGTTAACGCCGGG-G-TAATCACGATGATATGG 936
Query 934 AC-ATTGACAGAGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACG 992
|| | |||||||||||| |||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 937 ACGA-TGACAGAGCTAATTAGACATCCAAGAGTGATGAAGAAACTTCAAGAAGAGATTCG 995
Query 993 AGCAATGCTTGGACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTA 1052
||||| || || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 996 AGCAACACTCGGGTCCAACAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTTGAGTA 1055
Query 1053 CTTGAAA-TTGGTGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCC 1111
| | ||| ||||||| | |||||||||||||||||||||||| ||||| |||||||||
Sbjct 1056 CCT-AAAGATGGTGATCGAGGAAACATTCAGATTACACCCACCTGCTCCAATCTTGCTCC 1114
Query 1112 CAAGACTAACTATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGA 1171
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1115 CAAGATTAACAATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAAAACACCATGA 1174
Query 1172 TCCAAATCAACACTTACGCAATAGGACGGGATCCCAAATATTGGAAACAACC-TGGTGAG 1230
| | ||||||| |||| | |||||||| |||||||||| ||||| |||| || ||
Sbjct 1175 TTGAGATCAACATTTACACGATAGGACGTGATCCCAAATGTTGGACT-AACCCTGACGAA 1233
Query 1231 TTCATCCCCGAGAGGTTTCTTGA-TAGCC-CTATCGATTATAAGGGTCAACATTTTGAGC 1288
||||| || || || ||| || | || | |||| | || |||||||| ||||| ||||
Sbjct 1234 TTCATGCCTGAAAGATTT-TTCAATA-CTTCTATAAACTACAAGGGTCAGCATTTCGAGC 1291
Query 1289 TATTACCGTTTGGAGCTGGACGTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGG 1348
| || || ||||||||||| ||||||| |||||| ||||||||| || ||||||||
Sbjct 1292 TCTTGCCCTTTGGAGCTGGTCGTAGGAGCTGTCCCGGGATGGCCTTAGGAATCACCATTC 1351
Query 1349 TCGAGCTCGGGCTTCTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGA 1408
| ||||| || |||||||| |||||||| |||||| |||||||||||||| |||||||||
Sbjct 1352 TTGAGCTAGGCCTTCTTAATCTTCTTTATTTCTTCAATTGGAGTTTGCCCGATGGAATGA 1411
Query 1409 CTATTGAAGATATTGACATGGAAGAAGACGAAGGGTTCG-CTATCGCCAAGAAAGTCCCT 1467
| |||| |||||||||||||||||||| | || || | |||||||||||| | |||
Sbjct 1412 CCATTGCAGATATTGACATGGAAGAAGTTGGAGCTTTAAAC-ATCGCCAAGAAAATTCCT 1470
Query 1468 CTTGTTCTCATACAAACT 1485
|||| ||| ||| ||||
Sbjct 1471 CTTGAGCTCGTACCAACT 1488
> Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227
Length=1413
Score = 791 bits (428), Expect = 0.0
Identities = 973/1230 (79%), Gaps = 61/1230 (5%)
Strand=Plus/Plus
Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCTTTAATCCTTTTTAAAAAG 60
|||||||||||||| |||||||||| || || ||||||| ||| ||||| |||||||||
Sbjct 1 ATGTCTATCTTCCTAGGTTTCCTCTTCCTTTTCCCTCTCTTTTTGATCCTCTTTAAAAAG 60
Query 61 CTTTTACCATCG-AAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAAA 119
|||||||| ||| ||||| ||||||||||| ||||||| || || |||||||| |||||
Sbjct 61 CTTTTACCTTCGAAAAGG-AAGCTTCCTCCAGGACCTAGAGGTCTCCCGATCATAGGAAA 119
Query 120 CTTACACCAGCTTGGAAAATTGCTTTACAAAT-CTTTCCACAAAATCTCCCAAGAATATG 178
||| ||||| ||||||| || ||| || | | ||| ||||| |||| |||| |||
Sbjct 120 CTTGCACCATCTTGGAAGATCACTTCAC-AGTGTTTTTCACAAGCTCTCTTTAGAACATG 178
Query 179 GACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGT-TGTCTCTTCCAAAGAA 237
|||| ||| | ||||||| ||| || || |||||||| |||| | ||||||||||||||
Sbjct 179 GACCAGTGATGCTTCTCCATTTCGGAGTTGTCCCTGTGGTCGTCT-TCTCTTCCAAAGAA 237
Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAAC-GGC 296
|||| | ||||| |||||||||||||| || |||||||| ||||||||| || | ||
Sbjct 238 ACAGCTAAAGAAGTTCTCAAAACTCATGACCTAGAGACTTGCACCCGACCT-AAGCTGGT 296
Query 297 AGCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGA 356
|||| ||| |||||| || ||| || |||||||||||||| ||| | || || ||
Sbjct 297 GGCGAATGGGTTGTTTTCTCGCAACTTCAAAGACATTGGTTTCACTCAGTACGGTGAAGA 356
Query 357 CTGG-AGAGAGATGAGGAAAA--TCACAACGCTCGAGCTCTTTAG-CGTGAAAAAACTTA 412
|||| | |||||||| |||| | ||||||||||||||| | |||||| | |
Sbjct 357 CTGGCA-AGAGATGA--AAAAGCTGGTGGGGCTCGAGCTCTTTAGTC-CGAAAAAGC-AA 411
Query 413 AA-TCTTTCAGGTATATTAGAGAGGAAG-AGAGCGAATTGTTGGTCAAGAAAATATCAAA 470
|| |||||||||||||| ||||| |||| || | || ||| |||||||||||||||||||
Sbjct 412 AAGTCTTTCAGGTATATCAGAGAAGAAGAAG-GAGACTTGCTGGTCAAGAAAATATCAAA 470
Query 471 ATCTGTTGACGAAACACAAAACTCATCAGTAGATTTGAGGAAAGTCCT-TTTCTCCTTCA 529
||| | | | |||||| |||| | | | |||||||||| |||| ||| |||||||||||
Sbjct 471 ATCCGCT--C-AAACAC-AAAC-CCT-AATAGATTTGAGAAAAG-CCTCTTTCTCCTTCA 523
Query 530 CGGCTAGCATCAT-TTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTT--T- 585
| ||| | | ||| || |||||| || |||||||| ||||||||| | || ||||| |
Sbjct 524 CCGCTGGTACCATCTT-TAGACTAGCCTTTGGACAGAACTTCCACGAGTGTGATTTCATC 582
Query 586 G-T-TGATGCTAGCCTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCG 643
| | || || || || |||||| | ||||| || | || ||||| | ||| ||| |
Sbjct 583 GATATG-GGC-AGACTTGAAGAGCTGGTGCTAGAGGCGGAAACCAACGTTTGCATCTTGG 640
Query 644 CGTTCGCTGACTTCTT--CC-CTGG---AGGGTGGCTCATAGATAGGATCTCGGGTCAAC 697
| || |||||||||| || | || || ||||| ||| |||| || |||| ||
Sbjct 641 CACTCACTGACTTCTTACCCACGGGTCTTGGTTGGCTTGCAGACCGGATATCTGGTCGAC 700
Query 698 ATTCAAGGGTGAACAAAGCCTTTTAC-AAACTCACCAATTTCTATAAACATGTAATCGAT 756
|||| ||| ||||||||||||||| | |||||||||||||| | | ||||||| ||||||
Sbjct 701 ATTCGAGGATGAACAAAGCCTTTT-CAAAACTCACCAATTTATTTCAACATGTGATCGAT 759
Query 757 GATCATTTGAAGACTGGACAACCT-CAAGATCACTCGGACATCGTCAGTGTCATGTTGGA 815
|| || || |||| ||||||| || |||||||| || || ||||||||| |||||||||
Sbjct 760 GAGCAATTAAAGATTGGACAA-CTCCAAGATCATTCCAACCTCGTCAGTGCCATGTTGGA 818
Query 816 TATGATCAATAAACCCAC-AAAAGCTGATTCGTTT-AA-AGTCACTTATGACCATCTTAA 872
||||||||||| |||| | ||| | | ||| ||| || | |||||| ||||||| |
Sbjct 819 TATGATCAATAGACCCTCTAAATTCAG-TTC-TTTCAATA-TCACTTCCAACCATCTCAT 875
Query 873 AG-GAGTCATGTCAGATAtttttttGGCTGGAGTGAACGGGGGAGCCAA-CACAATGATA 930
|| | | ||||| | | | ||||||| |||||||||| |||| ||| ||| ||| ||
Sbjct 876 AGCCA-TGATGTCGGGTGTGGTTTTGGCCGGAGTGAACGCGGGA-ACAATCACGATGGTA 933
Query 931 TGGACATTGACAGAGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATA 990
|||| | ||||||| |||| ||||||||| || ||||||||||||||||||| ||||||
Sbjct 934 TGGATAATGACAGAACTAATCAGACATCCAAGGGTGATGAAAAAACTCCAAGCAGAGATT 993
Query 991 CGAGCAATGCTTGGACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAG 1050
||| ||| || ||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 994 CGAACAACACTCGGATCCAACAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTCGAG 1053
Query 1051 TACTTGAAA-TTGGTGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCT 1109
|||||||| ||| |||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 1054 TACTTGAAGCTTG-TGATCAAAGAAACATTCAGATTACATCCACCATCTCCTCTCTTGCT 1112
Query 1110 CCCAAGACTAACTATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCAT 1169
|||||| ||| |||||||| ||| |||||||||||||| |||||||||||||| || |
Sbjct 1113 ACCAAGAGAAACAATGTCCGATATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCT 1172
Query 1170 GATCCAA-ATCAACACTTACGCAATAGGAC 1198
||| | |||||||||||| | |||||||
Sbjct 1173 TATC-AGGATCAACACTTACACGATAGGAC 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5