BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44250.1 Length=1500 Score E Sequences producing significant alignments: (Bits) Value Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 1912 0.0 Ahg938228 jgi|Araly1|938228|scaffold_502419.1 1648 0.0 Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226 1094 0.0 Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 791 0.0 > Ahg323127 jgi|Araly1|323127|fgenesh1_pm.C_scaffold_5000671 Length=1500 Score = 1912 bits (1035), Expect = 0.0 Identities = 1356/1511 (90%), Gaps = 22/1511 (1%) Strand=Plus/Plus Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCC-TCTCTCTTTAATCCTT-TTTAAAA 58 |||||| ||||||||||||||||||||||||| || |||||||||| | ||| ||||||| Sbjct 1 ATGTCTGTCTTCCTTTGTTTCCTCTTACTCTT-CCTTCTCTCTTTAGT-CTTCTTTAAAA 58 Query 59 AGCTTTTACCATCGAAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAA 118 ||||||||| |||||||||||||||||||| ||||||| || || ||||||||||||| Sbjct 59 GGCTTTTACCGTCGAAAGGAAAGCTTCCTCCTGGACCTACGGGTCTACCGATCATCGGAA 118 Query 119 ACTTACACCAGCTTGGAAA-ATTGCTTTACAAATCTTTCCACAAAATCTCCCAAGAATAT 177 ||||||||||||||||||| || ||| || ||||||| ||||||||||||||||||||| Sbjct 119 ACTTACACCAGCTTGGAAAGGTT-CTTCACCAATCTTTTCACAAAATCTCCCAAGAATAT 177 Query 178 GGACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGTTGTCTCTTCCAAAGAA 237 ||||| ||||| ||||||| ||| ||||||||||| || ||||||||||| ||||||||| Sbjct 178 GGACCAGTGGTGCTTCTCCATTTCGGGGTAGTCCCAGTGATCGTTGTCTCCTCCAAAGAA 237 Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGGCA 297 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || Sbjct 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTAGCCGACCGAAAACAGCC 297 Query 298 GCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGAC 357 ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||| || ||| Sbjct 298 GCGGTTGGCTTGTTTACTTACAACTTTAAAGACATTGGTTTCGCTCCCTTTGGTGAGGAC 357 Query 358 TGGAGAGAGATGAGGAAAATCACAACGCTCGAGCTCTTTAGCGTGAAAAAACTTAAATCT 417 ||||||||||||||||||||||||| ||| |||||||||||| |||||||||| || ||| Sbjct 358 TGGAGAGAGATGAGGAAAATCACAATGCTTGAGCTCTTTAGCTTGAAAAAACTCAAGTCT 417 Query 418 TTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAATCTGTT 477 || ||||| |||||||| |||||||| |||||||||||||||||| |||| ||||||| | Sbjct 418 TTTAGGTACATTAGAGAAGAAGAGAGTGAATTGTTGGTCAAGAAATTATCCAAATCTGCT 477 Query 478 GACGAAACACAAAACTCATCAG-TAGATTTGAGGAAAGTCCTTTTCTCCTTCACGGCTAG 536 ||||| || ||| ||||| || || |||||||||||||| ||||||||||||| || || Sbjct 478 GACGAGTCAGAAACCTCATTAGTTA-ATTTGAGGAAAGTCTTTTTCTCCTTCACAGCAAG 536 Query 537 CATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG--AT-GC 593 |||||||||||||||||| |||||||| ||||||||||| |||||||||||| || | Sbjct 537 CATCATTTGTAGACTTGCCTTTGGACAGAACTTCCACCAGCGCGATTTTGTTGATATGGA 596 Query 594 TAGCCTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCGCGTTCGCTGA 653 || |||||||||| ||| |||| |||||| |||||||||||||||| |||||||| || Sbjct 597 GAGAGTGGAAGAGTTGGTGGTTGAGTCAGAGACCAACCTCGGCACCTTGGCGTTCGCCGA 656 Query 654 CTTCTTCCCTGGAGGGTGGCTCATAGATAGGATCTCGGGTCAACATTCAAGGGTGAACAA 713 |||||||||||||| ||||||||||| |||| || ||||| ||||| | |||| |||| Sbjct 657 TTTCTTCCCTGGAGGATGGCTCATAGACCGGATATCCGGTCATCATTCGACGGTGCACAA 716 Query 714 AGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGATCATTTGAAGACTGG 773 |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 717 AGCCTTTTCCAAACTCGCCAATTTCTTTAAACATGTAATCGATGATCATTTGAAGACTGG 776 Query 774 ACAACCTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATATGATCAATAAACCCAC 833 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 777 ---ACCTCAAGATCACTCGGACATCGTTAGTGTCATGTTGGATATGATCAATAAACCAAC 833 Query 834 AAAAGCT-GATTCGTTT-AAAGTCACTTATGACCATCTTAAAGGAGTCATGTCAGATAtt 891 ||||| | ||||| ||| ||||||||| |||||||||| |||||||||||||| ||||| Sbjct 834 AAAAG-TCGATTC-TTTCAAAGTCACTGATGACCATCTCAAAGGAGTCATGTCTGATATG 891 Query 892 tttttGGCTGGAGTGAACGGGGGAGCCAACACAATGATATGGACATTGACAGAGCTAAGC 951 ||||||||||||||| | |||||||||| ||| || |||||||| |||||||||||||| Sbjct 892 TTTTTGGCTGGAGTGGATGGGGGAGCCATCACGTTGTTATGGACAATGACAGAGCTAAGC 951 Query 952 AGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACGAGCAA-TGCTTGGACCCAA 1010 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 952 AGACATCCGAGAGTGATGAAGAAACTCCAAGAAGAGATACGAGCAACT-CTTGGACCCAA 1010 Query 1011 CAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAAATTGGTGATGGT 1070 ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||| | Sbjct 1011 CAAAGAGAGAATCACAGAAGAAGTTCTAGAAAAAGTTGAGTACTTGAAACTGGTGATCAT 1070 Query 1071 GGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGTCCGA 1130 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 1071 GGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTATGGCTGA 1130 Query 1131 CATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAATCAACACTTACGC 1190 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 1131 CATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCACATCAACACGTACAC 1190 Query 1191 AATAGGACGGGATCCCAAATATTGGAAACAA-CCTGGTGAGTTCATCCCCGAGAGGTTTC 1249 |||||| | ||||| ||||| |||||| || || |||||||||||||||||||||||| Sbjct 1191 GATAGGATGTGATCCTAAATACTGGAAA-AATCCCAGTGAGTTCATCCCCGAGAGGTTTC 1249 Query 1250 TTGATAGCCCTATCGATTATAAGGGTCAACATTTTGAGCTATTACCGTTTGGAGCTGGAC 1309 | |||| || |||||| ||||| || ||||||||||||||||| ||||||||| | |||| Sbjct 1250 TCGATAACCTTATCGAATATAACGGCCAACATTTTGAGCTATTGCCGTTTGGATCCGGAC 1309 Query 1310 GTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGGTCGAGCTCGGGCTTCTTAACC 1369 |||||||||||||||| ||| |||| ||||||||||| ||||||||||| |||||||||| Sbjct 1310 GTAGGATCTGTCCTGGAATGACCACGGGGATCACCATCGTCGAGCTCGGCCTTCTTAACC 1369 Query 1370 TTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACTATTGAAGATATTGACATGG 1429 |||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||| Sbjct 1370 TTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACCACTGCAGACATTGACATGG 1429 Query 1430 AAGAAGACGAAGGGTTCGCTATCGCCAAGAAAGTCCCTCTTGTTCTCATACAAACTTCTC 1489 ||||||| | ||| |||||||| |||||||||||||||||||| ||||||| |||||||| Sbjct 1430 AAGAAGATGGAGGTTTCGCTATGGCCAAGAAAGTCCCTCTTGTGCTCATACCAACTTCTC 1489 Query 1490 ATCGCTGGTGA 1500 ||||||||||| Sbjct 1490 ATCGCTGGTGA 1500 > Ahg938228 jgi|Araly1|938228|scaffold_502419.1 Length=1537 Score = 1648 bits (892), Expect = 0.0 Identities = 1318/1520 (87%), Gaps = 43/1520 (3%) Strand=Plus/Plus Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCT-CTTTAATCCTT-TTTAAAA 58 |||||||||||||||||||||||||||||||||||||||| | || || ||| || |||| Sbjct 21 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCCATT-AT-CTTCTTAAAAA 78 Query 59 AGCTTTTACCATCGAAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAA 118 |||||||||| || ||||| ||||||||||||||||||| || |||||||||||||||| Sbjct 79 AGCTTTTACCGTCAAAAGGGAAGCTTCCTCCGGGACCTAAGGGTCTTCCGATCATCGGAA 138 Query 119 ACTTACACCAGCTTGGAAAATTGCTTTACAAATCT-TTCCACAAAATCTCCCAAGAATAT 177 |||| ||||||||||||| ||| ||| |||||||| || ||||||||||| ||| ||||| Sbjct 139 ACTTGCACCAGCTTGGAAGATTTCTTCACAAATCTCTT-CACAAAATCTCTCAAAAATAT 197 Query 178 GGACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGTTGTCTCTTCCAAAGAA 237 ||||||||| | ||||||| ||| |||||||||||||| ||| ||||||||||||||||| Sbjct 198 GGACCGGTGATGCTTCTCCATTTCGGGGTAGTCCCTGTGATCATTGTCTCTTCCAAAGAA 257 Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGGCA 297 |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| Sbjct 258 GGAGCTGAGGAAGTGCTCAAGACTCATGATCTTGAGACTTGTAGCCGACCTAAGACGGTG 317 Query 298 GCGA-CTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACG- 355 | || | || |||||||||||||| || ||||| |||||||||||||| | ||| || | Sbjct 318 GGGAGC-GGGTTGTTTACTTACAACTTCAAAGATATTGGTTTTGCTCCGTATGGTGA-GA 375 Query 356 ACTGGAGAGAGATGAGGAAAATCACAACGCTCGAGCTCTTTAGCGTGAAAAAACTTAAAT 415 ||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| | Sbjct 376 ACTGGCGAGAGATGAGGAAAATCGCGGTGCTCGAGCTCTTTAGCCCCAAAAAGCTTAAGT 435 Query 416 CTTTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAATCTG 475 ||||||||||||||||||||||||||| ||| || ||||||||| |||||| |||| Sbjct 436 CTTTCAGGTATATTAGAGAGGAAGAGAACGAGTTTTTGGTCAAGCGGGTATCAAGTTCTG 495 Query 476 -TTGACGAAACACAAAAC-TCATCAG-TAGATTTGAGGAAAGTCCTTTTCT-CCTTCACG 531 | | || |||| ||| ||||||| || |||||||||||||| |||| | |||| || Sbjct 496 CTCG-TGAGACAC-CAACTTCATCAGTTA-ATTTGAGGAAAGTCATTTT-TACCTTTGCG 551 Query 532 GCTAGCATCATTTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG-- 589 || |||||||||||||||||||||||||||||||| || | ||||||||||| | Sbjct 552 GCAAGCATCATTTGTAGACTTGCTTTTGGACAAAA-TT---TC--TGCGATTTTGTCGAT 605 Query 590 ATGCTAG-C-CTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCGCGTT 647 ||| || | |||||||||| |||||||| || ||| |||||||||| |||| || || Sbjct 606 ATG-GAGACAGTGGAAGAGTTGGTGCTTGAGTCGGAGTCCAACCTCGGTTCCTTGGCTTT 664 Query 648 CGCTGACTTCTTCCCTGGAGGGTGGCTCATAGATAGGATCTCGGGTCAACATTCAAGGGT 707 ||||||||||| |||| ||||||| |||||||| ||||||| ||||| ||||| ||||| Sbjct 665 TGCTGACTTCTTACCTGCAGGGTGGATCATAGATCGGATCTCCGGTCAGCATTCCAGGGT 724 Query 708 GAACAAAGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGATCATTTGAA 767 ||||||||||||| ||||||||||||||||| | ||| ||| || |||||||||||||| Sbjct 725 GAACAAAGCCTTTGCCAAACTCACCAATTTCTTTGAACTTGTGATTGATGATCATTTGAA 784 Query 768 GACTGG-ACAACCTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATATGATCAATA 826 || ||| | || | ||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 785 GAGTGGAAAAATC-CAAGATCACTCAGACATCATCAGTGTCATGTTGGATATGATCAATA 843 Query 827 AACCCACAAAAGCT-GATTCGTT-TAAAGTCACTTATGACCATCTTAAAGGAGTCATGTC 884 ||||||| |||| | | ||| || ||||||||| |||||||||| |||||||| ||||| Sbjct 844 AACCCACTAAAG-TCGGTTC-TTATAAAGTCACCGATGACCATCTCAAAGGAGTTATGTC 901 Query 885 AGATAtttttttGGCTGGAGTGAACGGGGGAGCCAACACAATGATATGGAC-ATTGACAG 943 ||| | ||||||||||||||||||| |||| ||| ||||||||||||||| | |||||| Sbjct 902 GGATGTGTTTTTGGCTGGAGTGAACGCGGGATCCATCACAATGATATGGACGA-TGACAG 960 Query 944 AGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACGAGCAATGCTTG 1003 |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| | Sbjct 961 AGCTAAGCAGGCATCCGAGAGTGATGAAAAAACTTCAAGAAGAGATTCGAGCAACGCTCG 1020 Query 1004 GACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACTTGAAATTGG 1063 ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | | Sbjct 1021 GACCCAACAAAGAGAAAATCACAGAAGAAGACCTAGAGAAAGTTGAGTACTTGAAGCTCG 1080 Query 1064 TGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCCCAAGACTAACTA 1123 |||| | |||| ||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1081 TGATCGAGGAAGCATTCAGATTACACCCACCGGCTCCTCTCTTGCTCCCAAGACTAACAA 1140 Query 1124 TGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAATCAACA 1183 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1141 TGTCGGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGATCCAAGTCAACA 1200 Query 1184 CTTACGCAATAGGACGGGATCCCAAATAT-TGGAAACAACCTGGTGAGTTCATCCCCGAG 1242 ||||| | || ||||| ||||||||| | |||| | |||| | ||||||||||||||| Sbjct 1201 CTTACACGATTGGACGTGATCCCAAA-ACCTGGACAGAACCCGACGAGTTCATCCCCGAG 1259 Query 1243 AGGTTTCTTGATAGCCCTATCGATTATAAGGGTCAACATTTTGAGCTATTACCGTTTGGA 1302 |||||| | |||| ||||||||| || |||||||| || ||||||||||| ||||||||| Sbjct 1260 AGGTTTGTCGATAACCCTATCGAATACAAGGGTCAGCACTTTGAGCTATTGCCGTTTGGA 1319 Query 1303 GCTGGACGTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGGTCGAGCTCGGGCTT 1362 || ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| ||| Sbjct 1320 GCCGGACGTAGGATCTGTCCCGGGATGGCCACGGGGATTACCATCGTCGAGCTCGGCCTT 1379 Query 1363 CTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGACTATTGAAGATATT 1422 ||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||| Sbjct 1380 CTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCTAATGGAATGACCACTAAAGATATT 1439 Query 1423 GACATGGAAGAAGACGAAGGGTTCG-CTATCGCCAAGAAAGTCCCTCTTGTTCTCATACA 1481 |||||||||||||||| || || | | |||||||||||| || |||||| ||| ||| Sbjct 1440 GACATGGAAGAAGACGGAGCTTTTGTC-ATCGCCAAGAAAATCTCTCTTGAGCTCGTACC 1498 Query 1482 AACTTCT-CATCGCTGGTGA 1500 |||| || |||||||||||| Sbjct 1499 AACT-CTTCATCGCTGGTGA 1517 > Ahg898260 jgi|Araly1|898260|Al_scaffold_0005_2226 Length=1521 Score = 1094 bits (592), Expect = 0.0 Identities = 1220/1518 (80%), Gaps = 63/1518 (4%) Strand=Plus/Plus Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCTTTAATCCTTTTTAAAAAG 60 |||||||||||||| ||||| || || ||||| ||||||| ||| || | ||||||||| Sbjct 1 ATGTCTATCTTCCTATGTTTTCTATTCCTCTTCCCTCTCTTTTTGATTATATTTAAAAAG 60 Query 61 CTTTTACCATCG-AAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAAA 119 ||| ||| ||| ||| | ||||||||||||||||||| || |||||||| || ||||| Sbjct 61 ATTTCACCTTCGAAAATG-AAGCTTCCTCCGGGACCTACGGGTCTTCCGATTATAGGAAA 119 Query 120 CTTACACCAGCTTGGAAAATTGCTTTACAAATCT-TTCCACAAAATCTCCCAAGAATATG 178 || |||||| |||||| ||||||| ||| ||| || ||||| |||| |||| ||| Sbjct 120 TTTGCACCAGTTTGGAAGATTGCTTCACAGTTCTCTT-CACAAGCTCTCTTTAGAACATG 178 Query 179 GACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCA-TCGTTGTCTCTTCCAAAGAA 237 | || ||| | ||||||||||| ||||| |||||||| | |||| |||| ||||| ||| Sbjct 179 GGCCAGTGATGCTTCTCCGTTTCGGGGTCGTCCCTGT-AGTCGTAATCTCCTCCAAGGAA 237 Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAACGG-C 296 | |||| | ||||| ||||| |||||||| || |||||||| ||||||||||| | || | Sbjct 238 GCAGCTAAAGAAGTTCTCAAGACTCATGACCTAGAGACTTGCACCCGACCTAAGATGGTC 297 Query 297 AGCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGA 356 | | || || |||||| ||||||| || ||||||||||||||| ||| | |||||| || Sbjct 298 A-CAACCGGTTTGTTTTCTTACAACTTCAAAGACATTGGTTTTACTCAATATGGCGAGGA 356 Query 357 CTGGAGAGAGATGAGGAAAA--TCACAACGCTCGAGCTCTTTAG-CGTGAAAAAACTTAA 413 |||| ||||||||| |||| || ||||||||||||||| | |||||||| || Sbjct 357 CTGGCGAGAGATGA--AAAAGCTCGTGGGGCTCGAGCTCTTTAGTC-CGAAAAAAC-AAA 412 Query 414 A-TCTTTCAGGTATATTAGAGAGGAAGAGAGCGAATTGTTGGTCAAGAAAATATCAAAAT 472 | ||||| ||||| || |||||||||||||| || ||| ||||||||||||| ||||||| Sbjct 413 AGTCTTTTAGGTACATCAGAGAGGAAGAGAGTGACTTGCTGGTCAAGAAAATTTCAAAAT 472 Query 473 CTGTTGACGAAACACAAAACTCATCAGTAGATTTGAGG-AAAGTCCTTTTCTCCTTCACG 531 || | | |||||| |||| || ||| |||||| || |||| ||||||||||||||| Sbjct 473 CTACT--C-AAACAC-AAACCCA--AGTGGATTTG-GGAAAAGCCCTTTTCTCCTTCACC 525 Query 532 GCTAGCATCATT-TGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTTTGTTG- 589 || | || || | ||||||||| |||||||||||||||| | | || |||||| | | Sbjct 526 GCCGGTAT-TTTATTTAGACTTGCCTTTGGACAAAACTTCCGCGAGTGTGATTTTATCGA 584 Query 590 -AT-GCTAGCCTGGAAGAGTTAGTG-CTTGA-ATCAGAGGCCAACCTCGGCACCTTCGCG 645 || | || | |||||| | ||| | || | ||||| ||||| | |||||||| || Sbjct 585 TATGGAGAGAGTCGAAGAGCTGGTGAC-AGAGA-CAGAGACCAACGTAGGCACCTTGGCA 642 Query 646 TTCGCTGACTTCTT--CC-CTGG---AGGGTGGCTCATAGATAGGATCTCGGGTCAACAT 699 ||| |||||||||| || | || || ||||| ||||| || |||| ||||| | | Sbjct 643 TTCACTGACTTCTTCCCCACGGGTCTCGGATGGCTTATAGACCGGCTCTCTGGTCAGCGT 702 Query 700 TCAAGGGTGAACAAAGCCTTTTACAAACTCACCAATTTCTATAAACATGTAATCGATGAT 759 || ||| ||||||||| ||||| ||||||||||||||| | | ||||||| || |||||| Sbjct 703 TCGAGGATGAACAAAGTCTTTTCCAAACTCACCAATTTATTTCAACATGTGATTGATGAT 762 Query 760 CATTTGAAGACTGGACAAC-CTCAAGATCACTCGGACATCGTCAGTGTCATGTTGGATAT 818 ||||| ||||||| ||||| | | ||||||||| ||| || |||||| |||||||||||| Sbjct 763 CATTTAAAGACTGAACAACAC-CGAGATCACTCAGACCTCATCAGTGCCATGTTGGATAT 821 Query 819 GATCAATAAACCCACAAAAGCTGATTC-GTTTAAAG-TCACTTATGACCATCTTAAAGGA 876 |||||||||||| || ||| | | | ||| ||| |||||| || ||||| |||||| Sbjct 822 GATCAATAAACCTAC-AAATAT-AGGCACTTTCAAGATCACTTCCGATCATCTCAAAGGA 879 Query 877 GTCATGTCAG-ATAtttttttGGCTGGAGTGAACG-GGGGAGCCAA-CACAATGATATGG 933 |||||||| | || | |||||||| ||||| |||| ||| | || ||| ||||||||| Sbjct 880 GTCATGTC-GAATGTGTTTTTGGCGGGAGTTAACGCCGGG-G-TAATCACGATGATATGG 936 Query 934 AC-ATTGACAGAGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATACG 992 || | |||||||||||| |||||||| ||||||||||| ||||| ||||||||||| || Sbjct 937 ACGA-TGACAGAGCTAATTAGACATCCAAGAGTGATGAAGAAACTTCAAGAAGAGATTCG 995 Query 993 AGCAATGCTTGGACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTA 1052 ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 996 AGCAACACTCGGGTCCAACAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTTGAGTA 1055 Query 1053 CTTGAAA-TTGGTGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCTCC 1111 | | ||| ||||||| | |||||||||||||||||||||||| ||||| ||||||||| Sbjct 1056 CCT-AAAGATGGTGATCGAGGAAACATTCAGATTACACCCACCTGCTCCAATCTTGCTCC 1114 Query 1112 CAAGACTAACTATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCATGA 1171 ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1115 CAAGATTAACAATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAAAACACCATGA 1174 Query 1172 TCCAAATCAACACTTACGCAATAGGACGGGATCCCAAATATTGGAAACAACC-TGGTGAG 1230 | | ||||||| |||| | |||||||| |||||||||| ||||| |||| || || Sbjct 1175 TTGAGATCAACATTTACACGATAGGACGTGATCCCAAATGTTGGACT-AACCCTGACGAA 1233 Query 1231 TTCATCCCCGAGAGGTTTCTTGA-TAGCC-CTATCGATTATAAGGGTCAACATTTTGAGC 1288 ||||| || || || ||| || | || | |||| | || |||||||| ||||| |||| Sbjct 1234 TTCATGCCTGAAAGATTT-TTCAATA-CTTCTATAAACTACAAGGGTCAGCATTTCGAGC 1291 Query 1289 TATTACCGTTTGGAGCTGGACGTAGGATCTGTCCTGGGATGGCCACCGGGATCACCATGG 1348 | || || ||||||||||| ||||||| |||||| ||||||||| || |||||||| Sbjct 1292 TCTTGCCCTTTGGAGCTGGTCGTAGGAGCTGTCCCGGGATGGCCTTAGGAATCACCATTC 1351 Query 1349 TCGAGCTCGGGCTTCTTAACCTTCTTTACTTCTTCGATTGGAGTTTGCCCAATGGAATGA 1408 | ||||| || |||||||| |||||||| |||||| |||||||||||||| ||||||||| Sbjct 1352 TTGAGCTAGGCCTTCTTAATCTTCTTTATTTCTTCAATTGGAGTTTGCCCGATGGAATGA 1411 Query 1409 CTATTGAAGATATTGACATGGAAGAAGACGAAGGGTTCG-CTATCGCCAAGAAAGTCCCT 1467 | |||| |||||||||||||||||||| | || || | |||||||||||| | ||| Sbjct 1412 CCATTGCAGATATTGACATGGAAGAAGTTGGAGCTTTAAAC-ATCGCCAAGAAAATTCCT 1470 Query 1468 CTTGTTCTCATACAAACT 1485 |||| ||| ||| |||| Sbjct 1471 CTTGAGCTCGTACCAACT 1488 > Ahg898261 jgi|Araly1|898261|Al_scaffold_0005_2227 Length=1413 Score = 791 bits (428), Expect = 0.0 Identities = 973/1230 (79%), Gaps = 61/1230 (5%) Strand=Plus/Plus Query 1 ATGTCTATCTTCCTTTGTTTCCTCTTACTCTTGCCTCTCTCTTTAATCCTTTTTAAAAAG 60 |||||||||||||| |||||||||| || || ||||||| ||| ||||| ||||||||| Sbjct 1 ATGTCTATCTTCCTAGGTTTCCTCTTCCTTTTCCCTCTCTTTTTGATCCTCTTTAAAAAG 60 Query 61 CTTTTACCATCG-AAAGGAAAGCTTCCTCCGGGACCTATTGGACTTCCGATCATCGGAAA 119 |||||||| ||| ||||| ||||||||||| ||||||| || || |||||||| ||||| Sbjct 61 CTTTTACCTTCGAAAAGG-AAGCTTCCTCCAGGACCTAGAGGTCTCCCGATCATAGGAAA 119 Query 120 CTTACACCAGCTTGGAAAATTGCTTTACAAAT-CTTTCCACAAAATCTCCCAAGAATATG 178 ||| ||||| ||||||| || ||| || | | ||| ||||| |||| |||| ||| Sbjct 120 CTTGCACCATCTTGGAAGATCACTTCAC-AGTGTTTTTCACAAGCTCTCTTTAGAACATG 178 Query 179 GACCGGTGGTACTTCTCCGTTTAGGGGTAGTCCCTGTCATCGT-TGTCTCTTCCAAAGAA 237 |||| ||| | ||||||| ||| || || |||||||| |||| | |||||||||||||| Sbjct 179 GACCAGTGATGCTTCTCCATTTCGGAGTTGTCCCTGTGGTCGTCT-TCTCTTCCAAAGAA 237 Query 238 GGAGCTGAGGAAGTGCTCAAAACTCATGATCTTGAGACTTGTACCCGACCTAAAAC-GGC 296 |||| | ||||| |||||||||||||| || |||||||| ||||||||| || | || Sbjct 238 ACAGCTAAAGAAGTTCTCAAAACTCATGACCTAGAGACTTGCACCCGACCT-AAGCTGGT 296 Query 297 AGCGACTGGCTTGTTTACTTACAATTTTAAAGACATTGGTTTTGCTCCTTTTGGCGACGA 356 |||| ||| |||||| || ||| || |||||||||||||| ||| | || || || Sbjct 297 GGCGAATGGGTTGTTTTCTCGCAACTTCAAAGACATTGGTTTCACTCAGTACGGTGAAGA 356 Query 357 CTGG-AGAGAGATGAGGAAAA--TCACAACGCTCGAGCTCTTTAG-CGTGAAAAAACTTA 412 |||| | |||||||| |||| | ||||||||||||||| | |||||| | | Sbjct 357 CTGGCA-AGAGATGA--AAAAGCTGGTGGGGCTCGAGCTCTTTAGTC-CGAAAAAGC-AA 411 Query 413 AA-TCTTTCAGGTATATTAGAGAGGAAG-AGAGCGAATTGTTGGTCAAGAAAATATCAAA 470 || |||||||||||||| ||||| |||| || | || ||| ||||||||||||||||||| Sbjct 412 AAGTCTTTCAGGTATATCAGAGAAGAAGAAG-GAGACTTGCTGGTCAAGAAAATATCAAA 470 Query 471 ATCTGTTGACGAAACACAAAACTCATCAGTAGATTTGAGGAAAGTCCT-TTTCTCCTTCA 529 ||| | | | |||||| |||| | | | |||||||||| |||| ||| ||||||||||| Sbjct 471 ATCCGCT--C-AAACAC-AAAC-CCT-AATAGATTTGAGAAAAG-CCTCTTTCTCCTTCA 523 Query 530 CGGCTAGCATCAT-TTGTAGACTTGCTTTTGGACAAAACTTCCACCAATGCGATTT--T- 585 | ||| | | ||| || |||||| || |||||||| ||||||||| | || ||||| | Sbjct 524 CCGCTGGTACCATCTT-TAGACTAGCCTTTGGACAGAACTTCCACGAGTGTGATTTCATC 582 Query 586 G-T-TGATGCTAGCCTGGAAGAGTTAGTGCTTGAATCAGAGGCCAACCTCGGCACCTTCG 643 | | || || || || |||||| | ||||| || | || ||||| | ||| ||| | Sbjct 583 GATATG-GGC-AGACTTGAAGAGCTGGTGCTAGAGGCGGAAACCAACGTTTGCATCTTGG 640 Query 644 CGTTCGCTGACTTCTT--CC-CTGG---AGGGTGGCTCATAGATAGGATCTCGGGTCAAC 697 | || |||||||||| || | || || ||||| ||| |||| || |||| || Sbjct 641 CACTCACTGACTTCTTACCCACGGGTCTTGGTTGGCTTGCAGACCGGATATCTGGTCGAC 700 Query 698 ATTCAAGGGTGAACAAAGCCTTTTAC-AAACTCACCAATTTCTATAAACATGTAATCGAT 756 |||| ||| ||||||||||||||| | |||||||||||||| | | ||||||| |||||| Sbjct 701 ATTCGAGGATGAACAAAGCCTTTT-CAAAACTCACCAATTTATTTCAACATGTGATCGAT 759 Query 757 GATCATTTGAAGACTGGACAACCT-CAAGATCACTCGGACATCGTCAGTGTCATGTTGGA 815 || || || |||| ||||||| || |||||||| || || ||||||||| ||||||||| Sbjct 760 GAGCAATTAAAGATTGGACAA-CTCCAAGATCATTCCAACCTCGTCAGTGCCATGTTGGA 818 Query 816 TATGATCAATAAACCCAC-AAAAGCTGATTCGTTT-AA-AGTCACTTATGACCATCTTAA 872 ||||||||||| |||| | ||| | | ||| ||| || | |||||| ||||||| | Sbjct 819 TATGATCAATAGACCCTCTAAATTCAG-TTC-TTTCAATA-TCACTTCCAACCATCTCAT 875 Query 873 AG-GAGTCATGTCAGATAtttttttGGCTGGAGTGAACGGGGGAGCCAA-CACAATGATA 930 || | | ||||| | | | ||||||| |||||||||| |||| ||| ||| ||| || Sbjct 876 AGCCA-TGATGTCGGGTGTGGTTTTGGCCGGAGTGAACGCGGGA-ACAATCACGATGGTA 933 Query 931 TGGACATTGACAGAGCTAAGCAGACATCCGAGAGTGATGAAAAAACTCCAAGAAGAGATA 990 |||| | ||||||| |||| ||||||||| || ||||||||||||||||||| |||||| Sbjct 934 TGGATAATGACAGAACTAATCAGACATCCAAGGGTGATGAAAAAACTCCAAGCAGAGATT 993 Query 991 CGAGCAATGCTTGGACCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAG 1050 ||| ||| || ||| |||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 994 CGAACAACACTCGGATCCAACAAAGAGAGAATCACAGAAGAAGATCTACAGAAAGTCGAG 1053 Query 1051 TACTTGAAA-TTGGTGATGGTGGAAACATTCAGATTACACCCACCAGCTCCTCTCTTGCT 1109 |||||||| ||| |||| ||||||||||||||||| |||||| ||||||||||||| Sbjct 1054 TACTTGAAGCTTG-TGATCAAAGAAACATTCAGATTACATCCACCATCTCCTCTCTTGCT 1112 Query 1110 CCCAAGACTAACTATGTCCGACATCAAGATTCAAGGCTACAACATTCCCAAGAACACCAT 1169 |||||| ||| |||||||| ||| |||||||||||||| |||||||||||||| || | Sbjct 1113 ACCAAGAGAAACAATGTCCGATATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCT 1172 Query 1170 GATCCAA-ATCAACACTTACGCAATAGGAC 1198 ||| | |||||||||||| | ||||||| Sbjct 1173 TATC-AGGATCAACACTTACACGATAGGAC 1201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56145021130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5