BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44260.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484842 jgi|Araly1|484842|fgenesh2_kg.5__834__AT3G44260.1 1332 0.0
Ahg489075 jgi|Araly1|489075|fgenesh2_kg.6__2209__AT5G22250.1 713 0.0
> Ahg484842 jgi|Araly1|484842|fgenesh2_kg.5__834__AT3G44260.1
Length=891
Score = 1332 bits (721), Expect = 0.0
Identities = 839/895 (94%), Gaps = 12/895 (1%)
Strand=Plus/Plus
Query 30 ATGGCGATCATTAAACCAAAC-CGAGATCTCAAACC--G-GACGGTGTCACAGTCGTGAC 85
||||||||||| ||| ||||| | | || |||||| | | |||| |||| ||||||||
Sbjct 1 ATGGCGATCATCAAATCAAACAC-ATATAACAAACCATGTGGCGGTATCACCGTCGTGAC 59
Query 86 TCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAATCATCGA 145
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 TCGTGAAGTGTGGGCGGAGAATCTCGAATCAGAATTTGAGTTAATCAGCGAAATCATCGA 119
Query 146 CGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAAATCCGATCT 205
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CGATTATCCATTTATCTCAATGGACACTGAATTTCCCGGCGTGATTTTCAAATCCGATCT 179
Query 206 CCGGTTTACGAATCCCGACGATCTTTATACTCTTCTTAAAGCTAACGTCGACGCTCTCAG 265
||| ||||| ||||||| |||||| |||| |||||||||||||||||||||||| || ||
Sbjct 180 CCGATTTACAAATCCCGCCGATCTCTATAGTCTTCTTAAAGCTAACGTCGACGCGCTTAG 239
Query 266 CTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAACCTCCCAGACCTCGGTGA 325
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 240 TTTAATCCAAGTCGGTCTCACTCTCTCTGATGCTAACGGTAACCTCCCAGATCTCGGTGA 299
Query 326 CGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGACTTCGACGTGGCGCGTGA 385
| |||||||||||||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 300 --A-AATCACCGAGGATTCATCTGGGAGTTCAATTTCCGAGACTTTGATGTGGCGCGTGA 356
Query 386 CGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAGGTATCGATTTTGAGCGGAA 445
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 357 CGCACACGCGCCTGATTCGATCGAGTTACTTCGTCGGCAAGGTATCGATTTCGAGCGGAA 416
Query 446 TTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGATGATGTCGTCGGGGCTTGT 505
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 417 TTGTCGCGACGGTGTTGATTCGGAGAGGTTTGCGGAGTTGATGATGTCGTCGGGGCTTGT 476
Query 506 TTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCGTATGATTTCGGTTACTTGAT 565
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 TTGTAATGAGGATGTGAGCTGGGTGACGTTTCATAGCGCGTACGATTTCGGTTACTTGAT 536
Query 566 GAAGATTCTCACGCGCCGAGAATTGCCCGGCGCGTTGGGGGAGTTTAAGCGCGTGATGAG 625
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 GAAGATTCTCACGCGCCGTGAATTGCCCGGCGCGTTGGGTGAGTTTAAGCGCGTGATGAG 596
Query 626 AGTGTTGTTTGGGGAGCGTGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAAAGGAG 685
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 AGTGTTGTTTGGTGAGCGCGTGTATGATGTGAAGCATATGATGAAGTTTTGTGAGAGGAG 656
Query 686 ATTGTTTGGTGGTTTGGACCGGGTTGCAAGGACGCTTGAGGTTAACCGGGCGGTTGGGAA 745
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 ATTGTTTGGTGGTTTAGACCGGGTTGCTAGGACGCTTGAGGTTAACCGGGCGGTTGGGAA 716
Query 746 ATGTCATCAAGCTGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGGGA 805
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 717 ATGTCATCAAGCCGGTTCGGATAGTTTGCTTACGTGGCATGCGTTTCAGAGGATGAGAGA 776
Query 806 TTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGt 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTTGTATTTTGTTCAAGATGGGCCGGAGAAACATGCTGGGGTTTTGTATGGGCTTGAGGT 836
Query 866 tttttaaggggttt-cttttttttt---ataattcaaattcaattaattaactca 916
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 837 TTTTTAAGCGGTTTACTTTTTTTTTTTTATAATTCAAATTCAATTAATTAACTCA 891
> Ahg489075 jgi|Araly1|489075|fgenesh2_kg.6__2209__AT5G22250.1
Length=1083
Score = 713 bits (386), Expect = 0.0
Identities = 681/819 (83%), Gaps = 37/819 (5%)
Strand=Plus/Plus
Query 79 TCGTGACTCGTGAAGTCTGGGCGGAGAATCTCGAATCAGAATTTGAACTAATCAGCGAAA 138
|||||| |||||| || ||||| || |||||||| ||||| |||||||||||||||| ||
Sbjct 279 TCGTGATTCGTGACGTTTGGGCTGATAATCTCGAGTCAGAGTTTGAACTAATCAGCGGAA 338
Query 139 TCATCGACGATTATCCATTTATCTCAATGGACACAGAATTTCCCGGCGTGATTTTCAA-- 196
|| | || | ||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 339 TCGTTGAAGCTTACCCATTCATCTCCATGGATACAGAATTTCCCGGCGTGATTTTCAAGG 398
Query 197 ---A--T--CCGATCTCCGGT-TTACGAATCCC-GACGATCTTTATACTCTTCTTAAAGC 247
| | ||| ||||| || || ||| ||| | |||| || | |||||| ||| |
Sbjct 399 CGGATCTAGCCGTTCTCC-GTCTT-GGAAACCCTAATTATCTCTACAATCTTCTCAAATC 456
Query 248 TAACGTCGACGCTCTCAGCTTAATCCAAGTCGGTCTCACTCTCTCTGATGTTAACGGTAA 307
||||||||| ||| | |||||||||||||||||||| ||||||||||| | |||| ||
Sbjct 457 TAACGTCGATGCTTTAAGCTTAATCCAAGTCGGTCTTACTCTCTCTGACGCCGACGGAAA 516
Query 308 CCTCCCAGACCTCGGTGACGATCTTCACCGAGGATTCATCTGGGAGTTTAATTTCCGTGA 367
||||||||| ||| | | || || |||| ||||||||||||| || |||||||||||
Sbjct 517 CCTCCCAGATCTC-G-G-CGTTCAAAACCGCCGATTCATCTGGGAATTCAATTTCCGTGA 573
Query 368 CTTCGACGTGGCGCGTGA-CGCACACGCGCCTGATTCGATCGAGTTGCTTCGTCGGCAAG 426
||||||||||| |||||| | |||||||||||||||| |||||| |||| ||||| || |
Sbjct 574 CTTCGACGTGGAGCGTGATC-CACACGCGCCTGATTCCATCGAGCTGCTCCGTCGTCACG 632
Query 427 GTATCGATTTTGAGCGGAATTGTCGCGACGGTGTTGAGTCGGAGAGGTTTGCGGAGCTGA 486
| |||||||| |||||||| ||||||| |||||||| |||| |||||| ||||||||||
Sbjct 633 GGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGAATCGGGGAGGTTCGCGGAGCTGA 692
Query 487 TGATGTCGTCGGGGCTTG-TTTGTAATGAGGAAGTGAGCTGGGTGACGTTTCATAGCGCG 545
|||||||||||||| ||| | ||||| ||| |||||||||||||||||||| |||||
Sbjct 693 TGATGTCGTCGGGG-TTGATCTGTAACGAGTCTGTGAGCTGGGTGACGTTTCACAGCGCC 751
Query 546 TATGATTTCGGTTA-CTTGATGAAGATTCTCACGCGCCGAGA-ATTGCCCGG-CGCGTTG 602
|| ||||||||||| |||| ||||||||||||||||||| || || |||| ||||||
Sbjct 752 TACGATTTCGGTTACCTTG-TGAAGATTCTCACGCGCCGGGAGCTT--CCGGTGGCGTTG 808
Query 603 GGGGAG-TTTAAGCGCG-TGATGAGAG-TGTTGTTTGGGGAGCGTGTGTATGATGTGAAG 659
| ||| ||| | || | || | |||| | || || || ||| | || ||||||||||||
Sbjct 809 CGTGAGTTTTTA-CG-GTTGCTTAGAGCT-TTCTTCGGTGAGAGGGTTTATGATGTGAAG 865
Query 660 CATATGATGAAGTTTTGTGA--A-AGGAGATTGTTTGGTGGTTTGGACCGGGTTGCAAGG 716
||||| |||| ||||||||| | |||||||||| |||||||||||||||||||| ||
Sbjct 866 CATATTATGAGGTTTTGTGAGCAGAGGAGATTGTACGGTGGTTTGGACCGGGTTGCTCGG 925
Query 717 ACGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCTGGTTCGGATAGTTTGCTT 776
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 926 TCGCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTG 985
Query 777 ACGTGGCATGCGTTTCAGAGGATGAGGGATTTGTATTTTGTTCAAGATGGGCCGGAGAAA 836
|||||||| ||||||||||||||||||||||||||||| ||| | |||||| ||||||||
Sbjct 986 ACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGAGGATGGGGCGGAGAAA 1045
Query 837 CATGCTGGGGTTTTGTATGGGCTT-GAGGttttttaagg 874
|| || || ||||||||||| || |||||||||| |||
Sbjct 1046 CACGCCGGAGTTTTGTATGGT-TTAGAGGTTTTTTGAGG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5