BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44280.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484844 jgi|Araly1|484844|fgenesh2_kg.5__836__AT3G44280.1 815 0.0
Ahg489079 jgi|Araly1|489079|fgenesh2_kg.6__2213__AT5G22280.1 294 5e-79
> Ahg484844 jgi|Araly1|484844|fgenesh2_kg.5__836__AT3G44280.1
Length=631
Score = 815 bits (441), Expect = 0.0
Identities = 529/569 (93%), Gaps = 16/569 (3%)
Strand=Plus/Plus
Query 40 CAATTCATCATCA--ATCAAATAAAAACCTCAGCTTTTGGATTTCTCTACTAACACAAAA 97
||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 16 CAA-TCATCATCAGCATCAAATTAAAACCTCAGCTTTTGCATTTCTCTACTAACAC-AAA 73
Query 98 ACTCTCATTTCTCTGTTTCTGATTGCGAATTCGATCTCAAAATTCGATTTTTGAAAGATC 157
||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 74 ACTCTCATTTCGGTGTCTCTGATTGCGAATTTGATCTCAATATTCGATTTTTGAAAGATC 133
Query 158 TCGTTCAATTTCACCATTCAC-GGA-ACCTAACGGAGGAAGAGGTCGATCATGAAGTTTC 215
|| |||||||||||||||| | ||| || |||||||| |||| |||||||||||||||
Sbjct 134 TCTTTCAATTTCACCATTC-CTGGACCCCAAACGGAGGGAGAGTTCGATCATGAAGTTTG 192
Query 216 GTTCTTCCTCTGGTCAAATTCGATTTGTGTTTTAA-AAACTGAAGTAAACATTAAACAAT 274
||| ||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 193 GTTATTCCTCTGGTCAAATTCGATTTGTGTTTTAAGCAACTGAAG-------T-AACAAT 244
Query 275 GTCGAAACCGGTCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTCAGTTTGA 334
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTCGAAACCGATCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTCAGTTTGA 304
Query 335 ATGGAGGCAACCACTTGTTGAGTTAGATACAGCCACTAGCTCGTCTCAGAAACAGCAGCA 394
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 305 ATGGAGGCAACCACTTGTTGAGTTAGATACAGCCACCAGCTTGTCTCAGAAACAGCAGCA 364
Query 395 AATTTCAGATAGGGAAGAAGCTGTCAAAGAGAAGATCATTATATCACAAGAGAGACATAT 454
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 365 AATTTCAGATAGGGAAGAAGCTGTCAAAGAGAAGATCATCATATCACAAGAGAGACATAT 424
Query 455 CCAGAGGCTAAATGAGCTAGTCAGGAGTCTTCAATTGCAGTTGCTGCAATGCAAGGGAGA 514
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CCAGAGGCTAAATGAGCTTGTCAGGAGTCTTCAATTGCAGTTGCTGCAATGCAAGGGAGA 484
Query 515 GAATGAGACCCAAAATGCCACCAAAAGCTATCATATAAATAAACAATTCATCGAGGTCGA 574
||||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 485 GAATGTGACCCAAAATGCCACCAAAAGCTATCATCTAAACAAACAATTCATTGAGGTCGA 544
Query 575 AAGGAAACAAATCCTGGAAGGCTAAACTC 603
|||||||||||||||||||||||||||||
Sbjct 545 AAGGAAACAAATCCTGGAAGGCTAAACTC 573
> Ahg489079 jgi|Araly1|489079|fgenesh2_kg.6__2213__AT5G22280.1
Length=708
Score = 294 bits (159), Expect = 5e-79
Identities = 279/336 (83%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 268 AAACAATGTCGAAACCGGTCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTC 327
||| |||||||| ||| || ||||||| | ||| || |||||||||||||| || ||||
Sbjct 229 AAA-AATGTCGAGGCCGATCATGCTCGTCTTTCTTCTGGTTATACTTATAGTCACTTCTC 287
Query 328 AGTTTGAATGGAGGCAACCACTTGTTGAG-TTAGATACAGC-CACTAGCTCGTCTCAGAA 385
||||||||||||||||||||||| ||||| || ||| |||| | |||||| |||||||||
Sbjct 288 AGTTTGAATGGAGGCAACCACTTCTTGAGCTT-GATGCAGCTC-CTAGCTTGTCTCAGAA 345
Query 386 ACAGCAGCAAATTTC-AGATAGGGAAGAAGCTGTCAAAGAGAAGATCAT-TATATCACAA 443
||| ||||||||| | | | ||||||||||||||||| ||||||||||| | | ||||||
Sbjct 346 ACATCAGCAAATTGCTA-AGAGGGAAGAAGCTGTCAAGGAGAAGATCATCT-TGTCACAA 403
Query 444 GAGAGACATATCCAGAGGCTAAATGAGCTAGTCAGGA-GTCTTCAATTGCAGTTGCTGCA 502
||||||||||||||||||||||| || || || | || |||||||| ||||||| | ||
Sbjct 404 GAGAGACATATCCAGAGGCTAAACGACCTTGT-ACGAAGTCTTCAACTGCAGTTACAGCG 462
Query 503 ATGCAAGGGAGAGAATGAGACCCAAAATGCCACCAAAAGCTATCATATAAATAAACAATT 562
|||||| |||||||| ||||| | ||| || || ||| || ||| |||| ||||| ||
Sbjct 463 ATGCAAAGGAGAGAACGAGACACGAAACGCTACTGAAACCTCCCATCTAAACAAACAGTT 522
Query 563 CATCGAGGTCGAAAGGAAACAAATCCTGGAAGGCTA 598
||| ||| |||| |||||||| ||| |||||| |||
Sbjct 523 CATTGAGCTCGAGAGGAAACACATCGTGGAAGACTA 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5