BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44290.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902 1458 0.0
> Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902
Length=996
Score = 1458 bits (789), Expect = 0.0
Identities = 926/992 (93%), Gaps = 10/992 (1%)
Strand=Plus/Plus
Query 186 GAGCCGGCGGTGACGACGACGTTCCCTGGCTTCAAATTCTCCCCGACCGACATCGAACTT 245
|||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 10 GAGCCGGCGGTGACGACGGCGTTCCCTGGCTTCAAATTCTCACCGACGGATATCGAACTC 69
Query 246 ATATCTTATTACTTGAAGA-GGAAGATGGATGGTTTGGAG-AGATCTGTTGAGATTATAC 303
||||||||||||||||| | |||||||||||||||||||| || || |||||||||||||
Sbjct 70 ATATCTTATTACTTGAA-ACGGAAGATGGATGGTTTGGAGAAG-TCCGTTGAGATTATAC 127
Query 304 CTGAGGTTGAGATTTACAACTTCGAGCCTTGGGATTTACCTGATAAGTCTATCGTTAAAT 363
|||| || || ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 128 CTGAAGTCGATATTTATAACTTCGAGCCTTGGGATTTGCCTGATAAGTCCATCGTTAAAT 187
Query 364 CGGATAGCGAATGGTTCTTCTTCTGTGCTCGCGGTAAGAAGTATCCCCACGGTTCACAGA 423
||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 188 CGGATAGTGAATGGTTCTTCTTCTGTGCTCGTGGTAAAAAGTATCCCCATGGTTCACAGA 247
Query 424 ACAGAAGAGCAACCAAGATAGGATATTGGAAAGCCACAGGAAAAGAGCGTAATGTGAAGT 483
||| ||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 248 ACAAAAGAGCAACCAGGATGGGATATTGGAAAGCCACAGGAAAGGAACGTAATGTGAAGT 307
Query 484 CAG-GTTCTGAGGTCATTGGAACAAAGAGAACGCTTGTATTCCACATTGGCCGCGCGCCA 542
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 308 C-GAGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTATTCCACATTGGCCGCGCGCCA 366
Query 543 AAAGGAGGAAGAACGGAATGGCTTATGCATGAGTACTGCATGATTGGAGTATCACTGGAT 602
||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 367 AAAGGTGGAAGGACGGAATGGATTATGCATGAGTATTGCATGATTGGAGTATCACTGGAT 426
Query 603 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGGAG-TACAATTCAAAA 661
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 427 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGG-GCTACAATTCAAAA 485
Query 662 GCCACCACAACCAAGTTTACCA-CTGGATAAGCACGTAAACTTGCGGAATGAAGCTATTT 720
|||||||| ||||||||| | ||| | |||| || |||||||| ||||||||||||||
Sbjct 486 TCCACCACAGCCAAGTTTATCGTCTG-ACAAGCCCGAAAACTTGCAGAATGAAGCTATTT 544
Query 721 CAGAAAGTATTTATGGTTGGGAAACTATGGTTGATTTCTACTTATCAAGTGAGTCAGGGC 780
||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 545 TAGAAAGTATTTCTGGTTGGGAAAATATGGTTGATTTTTACTTATCAAGTGAGTCAGGGC 604
Query 781 AAGAACTACTTAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 840
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AGGAACTACTAAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 664
Query 841 GTGAAGAAGATTTCTATGCCGATATACTGAGGGATGAAATAGTAAAGCTAGATGATCCGG 900
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 665 GTGAAGAAGATTTCTATGCGGATATCCTTAGGGATGAAATAGTAAAGCTAGATGATCCGG 724
Query 901 CGGTATCCGGTAATACACTGATCAATGTACCAAGGCTTCAAACAGAGTCCAATACCACAA 960
|| ||| ||||||||||||| |||||| ||||||||||||||||||||| | |||||||
Sbjct 725 CGATATTGGGTAATACACTGACCAATGTCCCAAGGCTTCAAACAGAGTCCTACACCACAA 784
Query 961 GAGTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCGTTGCTACAGAAACTAC 1020
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 785 GATTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCCCTGCTACAGAAACTAC 844
Query 1021 CATTACAAAATGACACTGGAGAAGAGAACAACATATCCATGTCAAATTGCTTTATCGGTA 1080
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 845 CATTACAAAATGACACTGGAGAAGAAAACAACATATCCATGTCAAATTGCTTTATCGGTA 904
Query 1081 TCTACTCGATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTCGTTA 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 905 TCTACTCAATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTGGTTA 964
Query 1141 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 1172
||||||||||||||||||||||||||||||||
Sbjct 965 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5