BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44290.1 Length=1172 Score E Sequences producing significant alignments: (Bits) Value Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902 1458 0.0 > Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902 Length=996 Score = 1458 bits (789), Expect = 0.0 Identities = 926/992 (93%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 186 GAGCCGGCGGTGACGACGACGTTCCCTGGCTTCAAATTCTCCCCGACCGACATCGAACTT 245 |||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| Sbjct 10 GAGCCGGCGGTGACGACGGCGTTCCCTGGCTTCAAATTCTCACCGACGGATATCGAACTC 69 Query 246 ATATCTTATTACTTGAAGA-GGAAGATGGATGGTTTGGAG-AGATCTGTTGAGATTATAC 303 ||||||||||||||||| | |||||||||||||||||||| || || ||||||||||||| Sbjct 70 ATATCTTATTACTTGAA-ACGGAAGATGGATGGTTTGGAGAAG-TCCGTTGAGATTATAC 127 Query 304 CTGAGGTTGAGATTTACAACTTCGAGCCTTGGGATTTACCTGATAAGTCTATCGTTAAAT 363 |||| || || ||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 128 CTGAAGTCGATATTTATAACTTCGAGCCTTGGGATTTGCCTGATAAGTCCATCGTTAAAT 187 Query 364 CGGATAGCGAATGGTTCTTCTTCTGTGCTCGCGGTAAGAAGTATCCCCACGGTTCACAGA 423 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 188 CGGATAGTGAATGGTTCTTCTTCTGTGCTCGTGGTAAAAAGTATCCCCATGGTTCACAGA 247 Query 424 ACAGAAGAGCAACCAAGATAGGATATTGGAAAGCCACAGGAAAAGAGCGTAATGTGAAGT 483 ||| ||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 248 ACAAAAGAGCAACCAGGATGGGATATTGGAAAGCCACAGGAAAGGAACGTAATGTGAAGT 307 Query 484 CAG-GTTCTGAGGTCATTGGAACAAAGAGAACGCTTGTATTCCACATTGGCCGCGCGCCA 542 | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 308 C-GAGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTATTCCACATTGGCCGCGCGCCA 366 Query 543 AAAGGAGGAAGAACGGAATGGCTTATGCATGAGTACTGCATGATTGGAGTATCACTGGAT 602 ||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 367 AAAGGTGGAAGGACGGAATGGATTATGCATGAGTATTGCATGATTGGAGTATCACTGGAT 426 Query 603 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGGAG-TACAATTCAAAA 661 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 427 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGG-GCTACAATTCAAAA 485 Query 662 GCCACCACAACCAAGTTTACCA-CTGGATAAGCACGTAAACTTGCGGAATGAAGCTATTT 720 |||||||| ||||||||| | ||| | |||| || |||||||| |||||||||||||| Sbjct 486 TCCACCACAGCCAAGTTTATCGTCTG-ACAAGCCCGAAAACTTGCAGAATGAAGCTATTT 544 Query 721 CAGAAAGTATTTATGGTTGGGAAACTATGGTTGATTTCTACTTATCAAGTGAGTCAGGGC 780 ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 545 TAGAAAGTATTTCTGGTTGGGAAAATATGGTTGATTTTTACTTATCAAGTGAGTCAGGGC 604 Query 781 AAGAACTACTTAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 840 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 AGGAACTACTAAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 664 Query 841 GTGAAGAAGATTTCTATGCCGATATACTGAGGGATGAAATAGTAAAGCTAGATGATCCGG 900 ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 665 GTGAAGAAGATTTCTATGCGGATATCCTTAGGGATGAAATAGTAAAGCTAGATGATCCGG 724 Query 901 CGGTATCCGGTAATACACTGATCAATGTACCAAGGCTTCAAACAGAGTCCAATACCACAA 960 || ||| ||||||||||||| |||||| ||||||||||||||||||||| | ||||||| Sbjct 725 CGATATTGGGTAATACACTGACCAATGTCCCAAGGCTTCAAACAGAGTCCTACACCACAA 784 Query 961 GAGTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCGTTGCTACAGAAACTAC 1020 || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 785 GATTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCCCTGCTACAGAAACTAC 844 Query 1021 CATTACAAAATGACACTGGAGAAGAGAACAACATATCCATGTCAAATTGCTTTATCGGTA 1080 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 845 CATTACAAAATGACACTGGAGAAGAAAACAACATATCCATGTCAAATTGCTTTATCGGTA 904 Query 1081 TCTACTCGATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTCGTTA 1140 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 905 TCTACTCAATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTGGTTA 964 Query 1141 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 1172 |||||||||||||||||||||||||||||||| Sbjct 965 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43726985799 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5