BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44300.1 Length=1423 Score E Sequences producing significant alignments: (Bits) Value Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676 1482 0.0 Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1 1199 0.0 > Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676 Length=1023 Score = 1482 bits (802), Expect = 0.0 Identities = 958/1031 (93%), Gaps = 19/1031 (2%) Strand=Plus/Plus Query 41 ATGTCAAC-TTCAG-AAA-AC-ACTCCGTTTAATGGCGTTGCCTCATCCACCATTGTTCG 96 |||||||| ||| | ||| || ||||||||||| ||||||||||||||||||||||| | Sbjct 1 ATGTCAACATTC-GAAAACACAACTCCGTTTAACGGCGTTGCCTCATCCACCATTGTAAG 59 Query 97 AGCTACCATTGTCCAAGCCTCCACCGTCTACAACGATACTCCCGCCACTCTAGAAAAGGC 156 |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 60 AGCTACTATTGTCCAAGCCTCCACCGTCTACAACGACACTCCGGCCACTCTAGAAAAGGC 119 Query 157 GAACAAGTTTATTGTGGAGGCTGC-AAGCAAGGGATCGGAGCTGGTTGTGTTCCCGGAGG 215 ||| |||| |||||| |||||||| || ||| |||||| ||||||| ||||||||||||| Sbjct 120 GAAGAAGTATATTGTAGAGGCTGCGAA-CAACGGATCGAAGCTGGTGGTGTTCCCGGAGG 178 Query 216 CGTTTATCGGTGGTTATCCTCGAGGTTTTAGGTTTGGTTTAGGGGTGGGAGTTCATAACG 275 ||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 179 CGTTTATTGGCGGTTATCCTCGAGGTTTTAGGTTCGGTTTAGCTGTGGGAGTTCATAACG 238 Query 276 AAGAAGGGCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTG 335 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AAGAAGGCCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTG 298 Query 336 AAGTAGAAAAGTTGGCGGAGTTGGCCGGGAAGAACAATGTGTACTTGGTAATGGGAGCGA 395 |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 299 AAGTTGAAAAATTGGCGGAGTTGGCCGGGAAAAACAATGTGTACTTGGTAATGGGAGCGA 358 Query 396 TAGAGAAGGATGGGTATACACTCTATTGCACAGCACTTTTCTTCAGTCCACAAGGTCAGT 455 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 359 TAGAGAAGGATGGGTATACACTCTATTGCACAGCTCTTTTCTTCAGTCCACAAGGTCAGT 418 Query 456 TCTTGGGTAAGCACCGTAAACTCATGCCCACAAGTTTGGAACGTTGCATTTGGGGTCAAG 515 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 419 TCTTGGGTAAGCACCGTAAACTCATGCCCACAACTTTGGAACGTTGCATTTGGGGTCAAG 478 Query 516 GAGACGGATCAACCATCCCCGTTTACGACACTCCGATTGGAAAACTCGGTGCTGCTATTT 575 | |||||||||||||| ||||||||||||||||| || || ||||||||||||||||||| Sbjct 479 GGGACGGATCAACCATTCCCGTTTACGACACTCCCATCGGCAAACTCGGTGCTGCTATTT 538 Query 576 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCTTTGTACGCCAAAGGCATTGAGCTTT 635 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 539 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCATTGTACGCCAAAGGCATTGAGCTTT 598 Query 636 ATTGTGCACCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCACATTGCGA 695 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 599 ATTGTGCACCTACTGCTGATGGTTCTAAGGAATGGCAATCGTCGATGCTTCACATTGCGA 658 Query 696 TCGAAGGTGGATGTTTCGTATTGTCGGCTTGCCAGTTCTGCCTTCGTAAAGATTTCCCTG 755 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 659 TCGAAGGTGGATGTTTCGTGTTGTCGGCTTGCCAGTTCTGCCAGCGTAAAGATTTCCCTG 718 Query 756 ATCATCCTGACTACTTGTTTACCGA-TTGGTACGACGACAAAGAGCCTGACT-CTATTGT 813 ||||||||||||||||||||||||| |||| || || ||||||| | ||| | ||||||| Sbjct 719 ATCATCCTGACTACTTGTTTACCGACTTGG-ACAACAACAAAGAACATGA-TGCTATTGT 776 Query 814 TTCCCAAGGTGGAAGTGTTATTATTTCACCTTTGGGACAGGTTCTTGCGGGACCAAACTT 873 |||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||| Sbjct 777 CTCCCAAGGCGGAAGTGTCATTATTTCACCTATGGGACAGGTTCTTGCTGGACCAAACTT 836 Query 874 TGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTGGTGATG-TAGCAAGAGCTAAGT 932 ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 837 TGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTAATGA-GATAGCAAGAGCTAAGT 895 Query 933 TGTACTTCGAT-TCGGTTGGACATTACTCGA-GACCAGATGTTTTACA-CTTGACCGTAA 989 ||||||| ||| | ||| ||||||||||||| | ||||||||| | || ||||||||||| Sbjct 896 TGTACTTTGATGT-GGTCGGACATTACTCGAAG-CCAGATGTTCT-CAACTTGACCGTAA 952 Query 990 ATGAGCACCCGAAGAAACCGGTCACATTCATTTCGAAGGTGGAGAAAGCGGAAGATGACT 1049 |||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||| | Sbjct 953 ATGAGCACCCGAAGAAACCGGTTACATTCGTGTCGAAGGTGGAGAAAGCGGAGGATGAGT 1012 Query 1050 CAAACAAGTAA 1060 ||||||| ||| Sbjct 1013 CAAACAAATAA 1023 > Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1 Length=1095 Score = 1199 bits (649), Expect = 0.0 Identities = 918/1045 (88%), Gaps = 30/1045 (3%) Strand=Plus/Plus Query 36 AAA-AAATGTCAACT-TCAGAAA-AC-ACTCCGTTTAATGGCGTTGCCTCATCCACCATT 91 ||| ||||||||||| ||| ||| || ||||||||||| ||||||||| ||||| ||| Sbjct 35 AAAGAAATGTCAACTGTCAAAAACACAACTCCGTTTAACGGCGTTGCCCCATCCTCCACC 94 Query 92 GTTCGAGCTACCATTGTCCAAGCCTCCACCGTCTACAACGATACTCCCGCCAC-TCTAGA 150 || |||| |||||| || ||| | ||||||||||| ||||||||||||||||| | |||| Sbjct 95 GTGCGAGTTACCATCGTTCAATCGTCCACCGTCTATAACGATACTCCCGCCACAT-TAGA 153 Query 151 AAAGGCGAACAAGTTTATTGTGGAGGCTGCAAGCAAGGGAT-CGGAGCTGGTTG-TGTTC 208 |||||| | ||||||||||| ||||| || |||||||| | || |||| | || ||||| Sbjct 154 CAAGGCGGAGAAGTTTATTGTAGAGGCGGCGAGCAAGGG-TGCGAAGCTAG-TGTTGTTC 211 Query 209 CCGGAGGCGTTTATCGGTGGTTATCCTCGAGGTTTTAGGTTTGGTTTAGGGGTGGGAGTT 268 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 212 CCGGAGGCGTTTATCGGTGGTTATCCTCGTGGTTTTAGGTTTGGTTTAGCGGTGGGAGTT 271 Query 269 CATAACGAAGAAGGGCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCT 328 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 272 CATAACGAAGAAGGCCGTGATGAGTTCCGCAACTACCATGCTTCTGCTATTAAAGTTCCT 331 Query 329 GGCCCTGAAGTAGAAA-AGTTGGCGGAGTTGGCCGGGAAGAACAATGTGTACTTGGTAAT 387 |||||||||||||||| | ||||| |||||||||||||| ||||||||| |||||||||| Sbjct 332 GGCCCTGAAGTAGAAAGA-TTGGCTGAGTTGGCCGGGAAAAACAATGTGCACTTGGTAAT 390 Query 388 GGGAGCGATAGAGAAGGATGGGTATACACTCTATTGCACAGCACTTTTCTTCAGTCCACA 447 ||| || ||||||||||||||||||||||||||||| || || |||||||| |||||||| Sbjct 391 GGGGGCTATAGAGAAGGATGGGTATACACTCTATTGTACCGCTCTTTTCTTTAGTCCACA 450 Query 448 AGGTCAGTTCTTGGGTAAGCACCGTAAACTCATGCCCACAAGTTTGGAACGTTGCATTTG 507 ||||| |||||||||||||||||| ||| ||||||| ||| ||||||||||||||| || Sbjct 451 AGGTCGGTTCTTGGGTAAGCACCGGAAAGTCATGCCTACATCTTTGGAACGTTGCATATG 510 Query 508 GGGTCAAGGAGACGGATCAACCATCCCCGTTTACGACACTCCGATTGGAAAACTCGGTGC 567 ||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 511 GGGTCAAGGGGACGGATCAACCATCCCCGTTTACGACACTCCCATTGGAAAAATTGGTGC 570 Query 568 TGCTATTTGCTGGGAGAATAGGATGCCCCTCTACAGAACTGCTTTGTACGCCAAAGGCAT 627 ||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 571 TGCTATTTGCTGGGAGAATAGAATGCCCCTCTACAGAACTGCATTGTACGCTAAAGGCAT 630 Query 628 TGAGCTTTATTGTGCACCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCA 687 |||| ||||||||||||||||||||||| |||| ||||||||| | |||||| |||| Sbjct 631 TGAGATTTATTGTGCACCTACTGCTGATTATTCGTTGGAATGGCAAGCATCGATGATTCA 690 Query 688 CATTGCGATCGAAGGTGGATGTTTCGTATTGTC-G-GCTTGCCAGTTCTGCCTTCGTAAA 745 ||||||| | ||||||||||||||||| ||||| | || | | |||||||| || ||| Sbjct 691 CATTGCGGTAGAAGGTGGATGTTTCGTGTTGTCAGCGCAT-C-AGTTCTGCAAGCGCAAA 748 Query 746 GATTTCCCTGATCATCCTGACTACTTGTTTACCGA--TTGGTACGACGAC-AAAGAGCCT 802 || |||||||| |||||||| |||||||||| || ||| || ||| || ||||| | | Sbjct 749 GAGTTCCCTGAACATCCTGATTACTTGTTTAATGACATTG-TA-GAC-ACTAAAGAACAT 805 Query 803 GACTC-TATTGTTTCCCAAGGTGGAAGTGTTATTATTTCACCTTTGGGACAGGTTCTTGC 861 || || || ||||||| ||| || ||||| |||||||||||||||||||||||||| || Sbjct 806 GA-TCCTACTGTTTCCGGAGGCGGTAGTGTCATTATTTCACCTTTGGGACAGGTTCTCGC 864 Query 862 GGGACCAAACTTTGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTGGTGATGTAGC 921 |||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 865 CGGACCAAACTATGAATCAGAGGGTCTCGTCACAGCTGATCTTGATCTTGGTGATATAGC 924 Query 922 AAGAGCTAAGTTGTACTTCGAT-TCGGTTGGACATTACTCGA-GACCAGATGTTTT-ACA 978 |||||| ||||| ||||||||| | ||||||||||||||| | | |||||| |||| | | Sbjct 925 AAGAGCCAAGTTATACTTCGATGT-GGTTGGACATTACTCAAAG-CCAGATATTTTTA-A 981 Query 979 CTTGACCGTAAATGAGCACCCGAAGAAACCGGTCACATTCATTTCGAAGGTGGAGAAAGC 1038 |||||| |||||||||||||||||||||||||| |||||| | | |||||||||||||| Sbjct 982 CTTGACTGTAAATGAGCACCCGAAGAAACCGGTTACATTCGTGACAAAGGTGGAGAAAGC 1041 Query 1039 GGAAGATGACTCAAACAAGTAATCG 1063 ||| ||||| |||||||| || ||| Sbjct 1042 GGAGGATGATTCAAACAAATAGTCG 1066 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53212072265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5