BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44300.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676 1482 0.0
Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1 1199 0.0
> Ahg323132 jgi|Araly1|323132|fgenesh1_pm.C_scaffold_5000676
Length=1023
Score = 1482 bits (802), Expect = 0.0
Identities = 958/1031 (93%), Gaps = 19/1031 (2%)
Strand=Plus/Plus
Query 41 ATGTCAAC-TTCAG-AAA-AC-ACTCCGTTTAATGGCGTTGCCTCATCCACCATTGTTCG 96
|||||||| ||| | ||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 1 ATGTCAACATTC-GAAAACACAACTCCGTTTAACGGCGTTGCCTCATCCACCATTGTAAG 59
Query 97 AGCTACCATTGTCCAAGCCTCCACCGTCTACAACGATACTCCCGCCACTCTAGAAAAGGC 156
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 60 AGCTACTATTGTCCAAGCCTCCACCGTCTACAACGACACTCCGGCCACTCTAGAAAAGGC 119
Query 157 GAACAAGTTTATTGTGGAGGCTGC-AAGCAAGGGATCGGAGCTGGTTGTGTTCCCGGAGG 215
||| |||| |||||| |||||||| || ||| |||||| ||||||| |||||||||||||
Sbjct 120 GAAGAAGTATATTGTAGAGGCTGCGAA-CAACGGATCGAAGCTGGTGGTGTTCCCGGAGG 178
Query 216 CGTTTATCGGTGGTTATCCTCGAGGTTTTAGGTTTGGTTTAGGGGTGGGAGTTCATAACG 275
||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 179 CGTTTATTGGCGGTTATCCTCGAGGTTTTAGGTTCGGTTTAGCTGTGGGAGTTCATAACG 238
Query 276 AAGAAGGGCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTG 335
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGAAGGCCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCTGGCCCTG 298
Query 336 AAGTAGAAAAGTTGGCGGAGTTGGCCGGGAAGAACAATGTGTACTTGGTAATGGGAGCGA 395
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 AAGTTGAAAAATTGGCGGAGTTGGCCGGGAAAAACAATGTGTACTTGGTAATGGGAGCGA 358
Query 396 TAGAGAAGGATGGGTATACACTCTATTGCACAGCACTTTTCTTCAGTCCACAAGGTCAGT 455
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 TAGAGAAGGATGGGTATACACTCTATTGCACAGCTCTTTTCTTCAGTCCACAAGGTCAGT 418
Query 456 TCTTGGGTAAGCACCGTAAACTCATGCCCACAAGTTTGGAACGTTGCATTTGGGGTCAAG 515
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 TCTTGGGTAAGCACCGTAAACTCATGCCCACAACTTTGGAACGTTGCATTTGGGGTCAAG 478
Query 516 GAGACGGATCAACCATCCCCGTTTACGACACTCCGATTGGAAAACTCGGTGCTGCTATTT 575
| |||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 479 GGGACGGATCAACCATTCCCGTTTACGACACTCCCATCGGCAAACTCGGTGCTGCTATTT 538
Query 576 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCTTTGTACGCCAAAGGCATTGAGCTTT 635
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 GCTGGGAGAATAGGATGCCCCTCTACAGAACTGCATTGTACGCCAAAGGCATTGAGCTTT 598
Query 636 ATTGTGCACCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCACATTGCGA 695
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 599 ATTGTGCACCTACTGCTGATGGTTCTAAGGAATGGCAATCGTCGATGCTTCACATTGCGA 658
Query 696 TCGAAGGTGGATGTTTCGTATTGTCGGCTTGCCAGTTCTGCCTTCGTAAAGATTTCCCTG 755
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TCGAAGGTGGATGTTTCGTGTTGTCGGCTTGCCAGTTCTGCCAGCGTAAAGATTTCCCTG 718
Query 756 ATCATCCTGACTACTTGTTTACCGA-TTGGTACGACGACAAAGAGCCTGACT-CTATTGT 813
||||||||||||||||||||||||| |||| || || ||||||| | ||| | |||||||
Sbjct 719 ATCATCCTGACTACTTGTTTACCGACTTGG-ACAACAACAAAGAACATGA-TGCTATTGT 776
Query 814 TTCCCAAGGTGGAAGTGTTATTATTTCACCTTTGGGACAGGTTCTTGCGGGACCAAACTT 873
|||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 777 CTCCCAAGGCGGAAGTGTCATTATTTCACCTATGGGACAGGTTCTTGCTGGACCAAACTT 836
Query 874 TGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTGGTGATG-TAGCAAGAGCTAAGT 932
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 837 TGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTAATGA-GATAGCAAGAGCTAAGT 895
Query 933 TGTACTTCGAT-TCGGTTGGACATTACTCGA-GACCAGATGTTTTACA-CTTGACCGTAA 989
||||||| ||| | ||| ||||||||||||| | ||||||||| | || |||||||||||
Sbjct 896 TGTACTTTGATGT-GGTCGGACATTACTCGAAG-CCAGATGTTCT-CAACTTGACCGTAA 952
Query 990 ATGAGCACCCGAAGAAACCGGTCACATTCATTTCGAAGGTGGAGAAAGCGGAAGATGACT 1049
|||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||| |
Sbjct 953 ATGAGCACCCGAAGAAACCGGTTACATTCGTGTCGAAGGTGGAGAAAGCGGAGGATGAGT 1012
Query 1050 CAAACAAGTAA 1060
||||||| |||
Sbjct 1013 CAAACAAATAA 1023
> Ahg484849 jgi|Araly1|484849|fgenesh2_kg.5__841__AT3G44320.1
Length=1095
Score = 1199 bits (649), Expect = 0.0
Identities = 918/1045 (88%), Gaps = 30/1045 (3%)
Strand=Plus/Plus
Query 36 AAA-AAATGTCAACT-TCAGAAA-AC-ACTCCGTTTAATGGCGTTGCCTCATCCACCATT 91
||| ||||||||||| ||| ||| || ||||||||||| ||||||||| ||||| |||
Sbjct 35 AAAGAAATGTCAACTGTCAAAAACACAACTCCGTTTAACGGCGTTGCCCCATCCTCCACC 94
Query 92 GTTCGAGCTACCATTGTCCAAGCCTCCACCGTCTACAACGATACTCCCGCCAC-TCTAGA 150
|| |||| |||||| || ||| | ||||||||||| ||||||||||||||||| | ||||
Sbjct 95 GTGCGAGTTACCATCGTTCAATCGTCCACCGTCTATAACGATACTCCCGCCACAT-TAGA 153
Query 151 AAAGGCGAACAAGTTTATTGTGGAGGCTGCAAGCAAGGGAT-CGGAGCTGGTTG-TGTTC 208
|||||| | ||||||||||| ||||| || |||||||| | || |||| | || |||||
Sbjct 154 CAAGGCGGAGAAGTTTATTGTAGAGGCGGCGAGCAAGGG-TGCGAAGCTAG-TGTTGTTC 211
Query 209 CCGGAGGCGTTTATCGGTGGTTATCCTCGAGGTTTTAGGTTTGGTTTAGGGGTGGGAGTT 268
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 212 CCGGAGGCGTTTATCGGTGGTTATCCTCGTGGTTTTAGGTTTGGTTTAGCGGTGGGAGTT 271
Query 269 CATAACGAAGAAGGGCGTGATGAGTTCCGCAAGTACCATGCTTCTGCTATTAAAGTTCCT 328
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 272 CATAACGAAGAAGGCCGTGATGAGTTCCGCAACTACCATGCTTCTGCTATTAAAGTTCCT 331
Query 329 GGCCCTGAAGTAGAAA-AGTTGGCGGAGTTGGCCGGGAAGAACAATGTGTACTTGGTAAT 387
|||||||||||||||| | ||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 332 GGCCCTGAAGTAGAAAGA-TTGGCTGAGTTGGCCGGGAAAAACAATGTGCACTTGGTAAT 390
Query 388 GGGAGCGATAGAGAAGGATGGGTATACACTCTATTGCACAGCACTTTTCTTCAGTCCACA 447
||| || ||||||||||||||||||||||||||||| || || |||||||| ||||||||
Sbjct 391 GGGGGCTATAGAGAAGGATGGGTATACACTCTATTGTACCGCTCTTTTCTTTAGTCCACA 450
Query 448 AGGTCAGTTCTTGGGTAAGCACCGTAAACTCATGCCCACAAGTTTGGAACGTTGCATTTG 507
||||| |||||||||||||||||| ||| ||||||| ||| ||||||||||||||| ||
Sbjct 451 AGGTCGGTTCTTGGGTAAGCACCGGAAAGTCATGCCTACATCTTTGGAACGTTGCATATG 510
Query 508 GGGTCAAGGAGACGGATCAACCATCCCCGTTTACGACACTCCGATTGGAAAACTCGGTGC 567
||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 511 GGGTCAAGGGGACGGATCAACCATCCCCGTTTACGACACTCCCATTGGAAAAATTGGTGC 570
Query 568 TGCTATTTGCTGGGAGAATAGGATGCCCCTCTACAGAACTGCTTTGTACGCCAAAGGCAT 627
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 571 TGCTATTTGCTGGGAGAATAGAATGCCCCTCTACAGAACTGCATTGTACGCTAAAGGCAT 630
Query 628 TGAGCTTTATTGTGCACCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCA 687
|||| ||||||||||||||||||||||| |||| ||||||||| | |||||| ||||
Sbjct 631 TGAGATTTATTGTGCACCTACTGCTGATTATTCGTTGGAATGGCAAGCATCGATGATTCA 690
Query 688 CATTGCGATCGAAGGTGGATGTTTCGTATTGTC-G-GCTTGCCAGTTCTGCCTTCGTAAA 745
||||||| | ||||||||||||||||| ||||| | || | | |||||||| || |||
Sbjct 691 CATTGCGGTAGAAGGTGGATGTTTCGTGTTGTCAGCGCAT-C-AGTTCTGCAAGCGCAAA 748
Query 746 GATTTCCCTGATCATCCTGACTACTTGTTTACCGA--TTGGTACGACGAC-AAAGAGCCT 802
|| |||||||| |||||||| |||||||||| || ||| || ||| || ||||| | |
Sbjct 749 GAGTTCCCTGAACATCCTGATTACTTGTTTAATGACATTG-TA-GAC-ACTAAAGAACAT 805
Query 803 GACTC-TATTGTTTCCCAAGGTGGAAGTGTTATTATTTCACCTTTGGGACAGGTTCTTGC 861
|| || || ||||||| ||| || ||||| |||||||||||||||||||||||||| ||
Sbjct 806 GA-TCCTACTGTTTCCGGAGGCGGTAGTGTCATTATTTCACCTTTGGGACAGGTTCTCGC 864
Query 862 GGGACCAAACTTTGAATCAGAGGGTCTCATCACAGCTGATCTTGATCTTGGTGATGTAGC 921
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 865 CGGACCAAACTATGAATCAGAGGGTCTCGTCACAGCTGATCTTGATCTTGGTGATATAGC 924
Query 922 AAGAGCTAAGTTGTACTTCGAT-TCGGTTGGACATTACTCGA-GACCAGATGTTTT-ACA 978
|||||| ||||| ||||||||| | ||||||||||||||| | | |||||| |||| | |
Sbjct 925 AAGAGCCAAGTTATACTTCGATGT-GGTTGGACATTACTCAAAG-CCAGATATTTTTA-A 981
Query 979 CTTGACCGTAAATGAGCACCCGAAGAAACCGGTCACATTCATTTCGAAGGTGGAGAAAGC 1038
|||||| |||||||||||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 982 CTTGACTGTAAATGAGCACCCGAAGAAACCGGTTACATTCGTGACAAAGGTGGAGAAAGC 1041
Query 1039 GGAAGATGACTCAAACAAGTAATCG 1063
||| ||||| |||||||| || |||
Sbjct 1042 GGAGGATGATTCAAACAAATAGTCG 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5