BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44326.1
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484851 jgi|Araly1|484851|fgenesh2_kg.5__843__AT3G44326.1 1066 0.0
> Ahg484851 jgi|Araly1|484851|fgenesh2_kg.5__843__AT3G44326.1
Length=1127
Score = 1066 bits (577), Expect = 0.0
Identities = 711/775 (92%), Gaps = 12/775 (2%)
Strand=Plus/Plus
Query 426 CCGTTGATACCTCGGAGTTAATCTCAGCCGTTGATATATTCTACAAAGATGACGTGATTT 485
||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 359 CCGTTGATATGACGGAGTTAATCTCAGCCGTTGATATTTTCTACAAAGATAAAGTGATTT 418
Query 486 TCTCAAGGGTTCATGTTACAGAGACAGTCTCTGGTTGGTTCCTTTGCTCACCTATGCGTG 545
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 419 TCTCAAGGGTTCATGTGACAGAGACAGTCTCTGGGTGGTTCCTTTGTTCACCTATGCGTG 478
Query 546 TCGATCTTGTCGAACCGAAAGAACTAATTCCGACCAGAGTTT---TGGTTACGGACCAAT 602
||||||||||||||||||||||||||||| |||| | ||||| |||| | ||||||
Sbjct 479 TCGATCTTGTCGAACCGAAAGAACTAATTTCGACAAAAGTTTCAGTGGTCA---ACCAAT 535
Query 603 GT-AAGGATGACACGTGGAAAAGTGACTTGGAAGAGAATCTCTCCTTGAGCTGGATACTC 661
| ||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 536 GGGAAG-ATGACACGTGGAAAAATGACTTGGAAAAGGATCTCTCCTTGAGCTGGATACTC 594
Query 662 ATTGACCCGACATGTAAACGTGCGGCGGATGTATCAACCCGTAAACCTGTCTCGGTGCAC 721
||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 ATTGACCAGACCGGTAAACGTGCGGCGGATGTATCAACCCGTAAACCCGTCTCGGTGCAA 654
Query 722 CGTCATTGGTTAACCGGAGAAGTCCACGTAAAATTCTCCTCTATTTTTGTCGTGGGCAAC 781
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 655 CGTCATTGGTTAACCGGAGAAGTTCACGTAAAATTCTCAACTATTTTTGTCGTGGGCAAC 714
Query 782 AAGAAAAGGTCGGAGCAAGTGGAGTTCACTGTAACGGTGGTGCTGGCGGTGTTTAACCGG 841
||||||||||| ||||||||||||||||| || |||||||| ||||||| ||||||||||
Sbjct 715 AAGAAAAGGTCAGAGCAAGTGGAGTTCACGGTGACGGTGGTTCTGGCGGCGTTTAACCGG 774
Query 842 AGGGAAGAGGAGACAGCAGTGATGCAGATAAGAGAGGTGAGCCTAGTAGCAGAGGACAAG 901
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGGAAGAGGAAACAGCGGTAATGCAGATAAGAGAGGTGAGCCTAGTAGCAGAGGACAAA 834
Query 902 GATGGGAGGAATTTAGGAGGGAA-GGTTAGTTTGGAAATTTTGGTGGCGGCCATGGGGAT 960
||||||| |||||||||||||| ||| ||||||| |||||||| ||||||||||||||
Sbjct 835 GATGGGAAAAATTTAGGAGGGAATGGT-AGTTTGGTAATTTTGGCGGCGGCCATGGGGAG 893
Query 961 GAAACGTAGGTTTAGGGCGGGAGGGGAAGAAGAAGGGAAAGAGAAGTACATAGAATAT-A 1019
||| ||| ||||||||||||||||||||| || |||||||||||||||| |||||| | |
Sbjct 894 GAAGCGTCGGTTTAGGGCGGGAGGGGAAGGAGGAGGGAAAGAGAAGTACTTAGAAT-TCA 952
Query 1020 TGGAGAGGAAGACCGCGAAGGCGGAGATGAAGTGGCGGCGAGGGAAAGAAACGGCTATGG 1079
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 953 TGGAGAGGAAGACCGCGAAGGCGGAGATGAAGTGGCGTCGAGGGAAAGAAACGGCAATGG 1012
Query 1080 AGACGGCGGCGTGCTGGATCGCCGTCCTCTTACTTGGTTTCCTTTTGTGTTTTTATCTGT 1139
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1013 AGACGGCGGCGTGTTGGATCGCCGTCCTTTTACTTGGTTTTCTTTTGTGTTTTTATCTGT 1072
Query 1140 TTATGCATAAAAATTTAGTAGCTATTATGAAAAAACTAATAAAATAGTTAAATAA 1194
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TTATACATAAAAATATGGTAGCTATTATGAAAAAACTAATAAAATAGTTAAATAA 1127
Score = 508 bits (275), Expect = 3e-143
Identities = 338/369 (92%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 95 ATGCTTTCGTCTTCGTCTTCGTCAACGGTGGAGCAACCATCACGTGGCGGAAGTCCGGGA 154
|||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 1 ATGCTTTCGTCTTCTTCTTCGTTGACGGTGGAGCAACCATCACGTACCGGAAGTTCGGGG 60
Query 155 ATCAACGCCGTGTCCTCCGATGTTTTACGGTCTAACATCCTAACCCGCCTCGACGGTTCC 214
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 61 ATCAACGCCGTGTCCTCCGACGTTTTACGGTCTAACATCCTCACCCGCCTCGACGGTGCT 120
Query 215 TCTCTCGCCGCCCTAAGCTGCACGTGCTCCAACCTAAACTCTTTTTGCTCCGACGAGTCC 274
|| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 TCACTTGCCGCCCTAAGCTGCACTTGCTCCAACCTAAACTCTTTTTGCTCGGACGAGTCC 180
Query 275 CTCTGGAGGCAACAATGTTCCGCTACATGGCCTTCTACCTCGGATACACGTGTCCAAAGC 334
|| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 181 CTATGGATGCAACAATGTTCCGCCACATGGCCTTCTACCTTAGATACACGTGTCCAAAGC 240
Query 335 ATCATCTCAACGTTCCCCGACGGTCACCGG-ACGtttttttCCGATTCCTTTCCGTTTCT 393
||||||||||||||||||| |||||||||| | |||||| || |||||||||||||||||
Sbjct 241 ATCATCTCAACGTTCCCCGCCGGTCACCGGCA-GTTTTTCTCTGATTCCTTTCCGTTTCT 299
Query 394 TGAACATGATGTTGGGATCAATCTCCCACCGTCCGTTGATACCTCGGAGTTAATCTCAGC 453
||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 300 TGAACATGATGGTGTGATTAATCTCCCACCGTCCGTTGATATGACGGAGTTAATCTCAGC 359
Query 454 CGTTGATAT 462
|||||||||
Sbjct 360 CGTTGATAT 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46319344155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5