BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44350.2
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163 697 0.0
> Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163
Length=699
Score = 697 bits (377), Expect = 0.0
Identities = 412/429 (96%), Gaps = 1/429 (0%)
Strand=Plus/Plus
Query 4 GGA-GAAGAGCTTTCTGTAGGGTTTCGGTTCTATCCGACCGAAGTAGAGCTCCTTACGTA 62
||| ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3 GGAGGAAGAGCTTCCCGTAGGGTTTCGGTTCTATCCGACAGAAGTAGAGCTTCTTACGTA 62
Query 63 TTACCTAAGAATCCAGCTTGGTGGAGGAAATGCCACCATTCATAGTCTCATACCGATCCT 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 TTACCTAAGAATCCAGCTTGGTGGAGGAAATGCCACCATTCACAGTCTCATACCGATCCT 122
Query 123 CGATGTGTTTAGCGTTGAGCCTACTCAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGG 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 123 CGATGTGTTTAGCGTTGAGCCTACGCAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGG 182
Query 183 AGATGCAGAACAATGGATTTTCTTTGTGCCAAGACAAGAGCGTGAAGCTAGAGGAGGCAG 242
||| |||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 183 AGACGCAGAACAATGGCTTTTCTTCGTGCCAAGACAAGAGCGGGAAGCTAGAGGAGGAAG 242
Query 243 ACCAAGTAGGACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCTGGACCCGTGTT 302
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 243 ACCGAGTAGGACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCAGGCCCCGTGTT 302
Query 303 CTCGCCGGATAACCGAGTGATCGGAGTAAAGAAGACGATGGTTTTCTATACCGGAAAAGC 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 CTCGCCGGATAACCGAGTGATCGGAGTTAAGAAGACGATGGTTTTCTATACCGGAAAAGC 362
Query 363 ACCTACTGGGAGAAAGACAAAGTGGAAGATGAATGAATATAAAGCAGTTGAAACAGCCAG 422
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 ACCTACTGGGAGAAAGACAAAGTGGAAGATGAATGAATACAAAGCAGTTGAAACAGCCAG 422
Query 423 TGTATCTAC 431
|||||||||
Sbjct 423 TGTATCTAC 431
Score = 407 bits (220), Expect = 6e-113
Identities = 240/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 477 AAAGTCAGGAAGCTCGAGAGCCTTTGACAGACGTCCCACAGAAGCTTATGCGATAGAGAG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AAAGTCAGGAAGCTCGAGAGCCTTTGACAGACGTCCCACAGAAGCTTATGCGATAGAGAG 509
Query 537 AAATCTTCCTAGCAATGGAGTTGAGACATCATCTCGTGCCACAATATCAACCTCACCAGA 596
|| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 510 AACGCTTCCTAGCCATGGAGTTGAGACATCATCTCGTGCCACATTATCCACCTCACCAGA 569
Query 597 AACTTCACATTCAGGAGGAAACCAAGTTGATTTACCGGTGAATGCTACTACTATTACACA 656
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 570 AACTTCACATTCAGGAGGAAACCAAGTTGATTTACCGGAAAATGCTACTACTATTACACA 629
Query 657 AAGCATCTCAGATATGGTTGATGAGCTATCGCAACCTTTTTGGGAGTGGGAACAAATGAA 716
||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 630 AAGCATCTCAGATATGGTTGATGGGCTATCACAACCTTTTTGGGAATGGGAACAAATGAA 689
Query 717 TTGGTCTTAA 726
||||||||||
Sbjct 690 TTGGTCTTAA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5