BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44370.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484858 jgi|Araly1|484858|fgenesh2_kg.5__850__AT3G44370.1 2137 0.0
Ahg937062 jgi|Araly1|937062|scaffold_501253.1 1628 0.0
> Ahg484858 jgi|Araly1|484858|fgenesh2_kg.5__850__AT3G44370.1
Length=1689
Score = 2137 bits (1157), Expect = 0.0
Identities = 1302/1373 (95%), Gaps = 5/1373 (0%)
Strand=Plus/Plus
Query 354 TCAAACTATGATTACTTGACTCAACCTGTGATCTCGTTGCTTGATTCATACCATGACATC 413
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 273 TCAAACTATGATTATTTAACTCAACCTGTGATTTCGTTGCTTGATTCGTACCATGACATC 332
Query 414 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCATTTAGAACGGCTTTG 473
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 333 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCTTTTAGAACGGCTTTG 392
Query 474 CTTCCTATACTGATTTTGCAACGGAAGCAAACTAAAAGGATCTCACAGTTCTTACCTAAG 533
||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 393 CTTCCTATACTGATTCTGCAACGCAAGCAAACTAGAAGGATCTCACAGTTCTTACCTAAG 452
Query 534 CTACCGCATTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTCTTGATCAATTGAAGCTT 593
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 453 TTACCGCCTTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTATTGATCAATTGAAGC-T 511
Query 594 TTTC-GGAAGGAAAGAAAAGATATCGGGTGCCCTTCGTTTTTGTGGGTTCCTGCTTATTT 652
|||| |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||
Sbjct 512 TTTCTGGAAGGAAAGAAGAGATAGCGGGTGCCCTTCGTTTTTGTGGTTTCCTGCTTATTT 571
Query 653 CTCCATCCAGATTTCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CTCCATCCAGATATCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 631
Query 713 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAATTCC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 632 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAGTTCC 691
Query 773 CAATGGTCTTTATGGTCCACTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 832
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CAATGGTCTTTATGGTCCTCTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 751
Query 833 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCACGGAATTGGCAAA 892
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 752 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCGCGGAACTGGCAAA 811
Query 893 AGCTTACAAGACATTTCTGAATCTTTTGACATGTGCTCTGTATTTCCTTTCATTCCAAAT 952
| ||| ||||| ||| ||||| ||||||||| |||||| ||| |||||||||||||||
Sbjct 812 AACTTTCAAGATGTTTTTGAATTTTTTGACATTTGCTCTTTATGGCCTTTCATTCCAAAT 871
Query 953 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATTGCTCAGCAATC 1012
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 872 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATAGCTCAGCAATC 931
Query 1013 AATCCTTAACCATCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 1072
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 AATCCTTAACCACCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 991
Query 1073 GAAAGAAGCTGGCAATCCTATATTAACAAATATAAATGAAGGGAAACTCACTGATCCATC 1132
|||||| ||||||||||||||||||||||| || ||||||| ||||| |||||| ||||
Sbjct 992 GAAAGAGGCTGGCAATCCTATATTAACAAACATTAATGAAGCAAAACTTACTGATTCATC 1051
Query 1133 CTCGAAAGGACGGTTGATCTCAGTGCATAACTTAACCCCTAAGGAGTTGGTTGCTCTTTC 1192
||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1052 CTCAAAAGGACGCTTGATCTCAGGGCATAACTTAACCCCTAAAGAGTTGGTTGCTCTTTC 1111
Query 1193 TGCTAAATACTTATCCGGAGGGCACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1252
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1112 TGCCAAATACTTATCCGGAGGGAACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1171
Query 1253 AGAAAAGGATCCTGAATACCTTCAAGCTATGATTATTCTTGGACAGGCTTTATATCAGAA 1312
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1172 AGAAAAAGATCCTGAATACCTTCAAGCTATGGTTATTCTTGGCCAGGCTTTATATCAGAA 1231
Query 1313 AGACCAGTTCGCGGAAGCTGCAAAATGCTTAGAGCAGGCTGCTTCAAAGCTTCTTGATAC 1372
||||||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1232 AGACCAGTTTGCTGAAGCTGCAAAATACTTAGAGCTGGCTGCTTCAAAGCTTCTTGATAC 1291
Query 1373 CAGTCCAACCGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1432
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CAGTCCAACAGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1351
Query 1433 CTCCAATATACGTCAGGGGAAGACATCAGAAGGAATCACACACCTTGAAAGAGTAGCAAA 1492
||||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1352 CTCCAATATTCGCCAGGGAAAGACATCGGAAGGAATCACTCACCTTGAAAGAGTAGCAAA 1411
Query 1493 CATGAAAGAGCCCGACGATCCTAAGAGCAAAGCTCATTACTTGGATGCATTGGTACTCTA 1552
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1412 CATGAAAGAGCCTGACGATCCCAAGAGCAAAGCTCATTACTTGGACGCATTGGTACTCTA 1471
Query 1553 CTCAAGTGCGATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1612
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 CTCAAGTGCTATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1531
Query 1613 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATGATA---C 1669
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1532 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATAATAATAC 1591
Query 1670 CATTCCCACTTCTTCTTCATCTAATTCTACCAGCAAAACTTCATAAGtttttt 1722
|||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1592 CATTCCCACTTCTTCTTCATCTAATTCTGTCAACAAAACTTCATAACTTTTTT 1644
Score = 298 bits (161), Expect = 1e-79
Identities = 212/237 (89%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCACCGGAAATGGCATTTCGTAGGGTTTTActctctcacctccgccgatctcacc 60
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTTCCTCACCGGAAATGGCATTTCGTAGGGTTTTACTCTCTAACCTCCGCCGATCTCACC 60
Query 61 acacttgctcctctctctctcctcaccatgtctccgccacAACCCAACCTTCAATCGCGC 120
||||||||||||||||||| |||||||| |||||||||| || || || |||||| |||
Sbjct 61 ACACTTGCTCCTCTCTCTCCCCTCACCACATCTCCGCCACGACACATCCGTCAATCACGC 120
Query 121 TCGCTCTTTTCCAATCCCGCTTCTTTTCCACTCCATCTGACCTAGATTCTGAGCTAACTC 180
||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 121 TCGGTCTTTTCCAATCCCGCTTCTTTTCCACTCCACCTGACCTCGACTCTGAGCTAACTC 180
Query 181 GATTCAGAGACGATTCAATCGCTGGCGTTGGAAGCAATGATCATGG-CTTAGAGTTC 236
|| |||||||||||||| || |||| |||||| ||||| ||| | || |||||||
Sbjct 181 GACTCAGAGACGATTCAGTCACTGGATTTGGAACCAATGGTCACGAACT-AGAGTTC 236
> Ahg937062 jgi|Araly1|937062|scaffold_501253.1
Length=1058
Score = 1628 bits (881), Expect = 0.0
Identities = 991/1045 (95%), Gaps = 3/1045 (0%)
Strand=Plus/Plus
Query 681 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 60
Query 741 GCTTTATGGTTTCAGAATTTGACCGAAATTCCCAATGGTCTTTATGGTCCACTTTTCCCC 800
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 61 GCTTTATGGTTTCAGAATTTGACCGAAGTTCCCAATGGTCTTTATGGTCCTCTTTTCCCC 120
Query 801 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 180
Query 861 CACAAAGTTGATAAATTCACGGAATTGGCAAAAGCTTACAAGACATTTCTGAATCTTTTG 920
|||||||||||||||||| ||||| |||||||| ||| ||||| ||| ||||| |||||
Sbjct 181 CACAAAGTTGATAAATTCGCGGAACTGGCAAAAACTTTCAAGATGTTTTTGAATTTTTTG 240
Query 921 ACATGTGCTCTGTATTTCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 980
|||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATTTGCTCTTTATGGCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 300
Query 981 ACCAATTTGTCATTCAGCATTGCTCAGCAATCAATCCTTAACCATCCCGTTGTAAGTGCA 1040
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ACCAATTTGTCATTCAGCATAGCTCAGCAATCAATCCTTAACCACCCCGTTGTAAGTGCA 360
Query 1041 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAAGCTGGCAATCCTATATTAACA 1100
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAGGCTGGCAATCCTATATTAACA 420
Query 1101 AATATAAATGAAGGGAAACTCACTGATCCATCCTCGAAAGGACGGTTGATCTCAGTGCAT 1160
|| || ||||||| ||||| |||||| ||||||| |||||||| |||||||||| ||||
Sbjct 421 AACATTAATGAAGCAAAACTTACTGATTCATCCTCAAAAGGACGCTTGATCTCAGGGCAT 480
Query 1161 AACTTAACCCCTAAGGAGTTGGTTGCTCTTTCTGCTAAATACTTATCCGGAGGGCACAAG 1220
|||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 481 AACTTAACCCCTAAAGAGTTGGTTGCTCTTTCTGCCAAATACTTATCCGGAGGGAACAAG 540
Query 1221 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAGGATCCTGAATACCTTCAAGCT 1280
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAAGATCCTGAATACCTTCAAGCT 600
Query 1281 ATGATTATTCTTGGACAGGCTTTATATCAGAAAGACCAGTTCGCGGAAGCTGCAAAATGC 1340
||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 601 ATGGTTATTCTTGGCCAGGCTTTATATCAGAAAGACCAGTTTGCTGAAGCTGCAAAATAC 660
Query 1341 TTAGAGCAGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACCGAAGTTGAAGAAGTCGAT 1400
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TTAGAGCTGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACAGAAGTTGAAGAAGTCGAT 720
Query 1401 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATACGTCAGGGGAAGACATCA 1460
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 721 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATTCGCCAGGGAAAGACATCG 780
Query 1461 GAAGGAATCACACACCTTGAAAGAGTAGCAAACATGAAAGAGCCCGACGATCCTAAGAGC 1520
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 781 GAAGGAATCACTCACCTTGAAAGAGTAGCAAACATGAAAGAGCCTGACGATCCCAAGAGC 840
Query 1521 AAAGCTCATTACTTGGATGCATTGGTACTCTACTCAAGTGCGATATTCAACGAAGGAAGG 1580
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 AAAGCTCATTACTTGGACGCATTGGTACTCTACTCAAGTGCTATATTCAACGAAGGAAGG 900
Query 1581 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 960
Query 1641 TTGTTGAAACAATGCGAAGAAGATGATA---CCATTCCCACTTCTTCTTCATCTAATTCT 1697
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 961 TTGTTGAAACAATGCGAAGAAGATAATAATACCATTCCCACTTCTTCTTCATCTAATTCT 1020
Query 1698 ACCAGCAAAACTTCATAAGtttttt 1722
|| ||||||||||||| ||||||
Sbjct 1021 GTCAACAAAACTTCATAACTTTTTT 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5