BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44370.1 Length=1908 Score E Sequences producing significant alignments: (Bits) Value Ahg484858 jgi|Araly1|484858|fgenesh2_kg.5__850__AT3G44370.1 2137 0.0 Ahg937062 jgi|Araly1|937062|scaffold_501253.1 1628 0.0 > Ahg484858 jgi|Araly1|484858|fgenesh2_kg.5__850__AT3G44370.1 Length=1689 Score = 2137 bits (1157), Expect = 0.0 Identities = 1302/1373 (95%), Gaps = 5/1373 (0%) Strand=Plus/Plus Query 354 TCAAACTATGATTACTTGACTCAACCTGTGATCTCGTTGCTTGATTCATACCATGACATC 413 |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||| Sbjct 273 TCAAACTATGATTATTTAACTCAACCTGTGATTTCGTTGCTTGATTCGTACCATGACATC 332 Query 414 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCATTTAGAACGGCTTTG 473 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 333 ACTGGATTGCCTTGGTGGGTGGTTATTGCTACGTCTACTGTGGCTTTTAGAACGGCTTTG 392 Query 474 CTTCCTATACTGATTTTGCAACGGAAGCAAACTAAAAGGATCTCACAGTTCTTACCTAAG 533 ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 393 CTTCCTATACTGATTCTGCAACGCAAGCAAACTAGAAGGATCTCACAGTTCTTACCTAAG 452 Query 534 CTACCGCATTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTCTTGATCAATTGAAGCTT 593 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 453 TTACCGCCTTTCTGGCCTCCACAAGGTTCAGGAAGGAGTGTTATTGATCAATTGAAGC-T 511 Query 594 TTTC-GGAAGGAAAGAAAAGATATCGGGTGCCCTTCGTTTTTGTGGGTTCCTGCTTATTT 652 |||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| Sbjct 512 TTTCTGGAAGGAAAGAAGAGATAGCGGGTGCCCTTCGTTTTTGTGGTTTCCTGCTTATTT 571 Query 653 CTCCATCCAGATTTCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 712 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 CTCCATCCAGATATCATGTTTTTTCTTGTGGATAACTAGCATCAGAAGAATGTCACTTGA 631 Query 713 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAATTCC 772 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 632 TCATCATCCTGGATTTGATTCGGGTGGAGCTTTATGGTTTCAGAATTTGACCGAAGTTCC 691 Query 773 CAATGGTCTTTATGGTCCACTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 832 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 692 CAATGGTCTTTATGGTCCTCTTTTCCCCTTTTTAATAGCTGGTTTGCATTACACAAACAC 751 Query 833 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCACGGAATTGGCAAA 892 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 752 ACAGATAACTTTTACAGCATCCTCAGTTCACAAAGTTGATAAATTCGCGGAACTGGCAAA 811 Query 893 AGCTTACAAGACATTTCTGAATCTTTTGACATGTGCTCTGTATTTCCTTTCATTCCAAAT 952 | ||| ||||| ||| ||||| ||||||||| |||||| ||| ||||||||||||||| Sbjct 812 AACTTTCAAGATGTTTTTGAATTTTTTGACATTTGCTCTTTATGGCCTTTCATTCCAAAT 871 Query 953 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATTGCTCAGCAATC 1012 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 872 GCCTCAGGGAAGTCTACTCTACTGGGCTACCAATTTGTCATTCAGCATAGCTCAGCAATC 931 Query 1013 AATCCTTAACCATCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 1072 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 932 AATCCTTAACCACCCCGTTGTAAGTGCAAAGTTGGGCCTACAAGCAAATGACTCTGTACA 991 Query 1073 GAAAGAAGCTGGCAATCCTATATTAACAAATATAAATGAAGGGAAACTCACTGATCCATC 1132 |||||| ||||||||||||||||||||||| || ||||||| ||||| |||||| |||| Sbjct 992 GAAAGAGGCTGGCAATCCTATATTAACAAACATTAATGAAGCAAAACTTACTGATTCATC 1051 Query 1133 CTCGAAAGGACGGTTGATCTCAGTGCATAACTTAACCCCTAAGGAGTTGGTTGCTCTTTC 1192 ||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1052 CTCAAAAGGACGCTTGATCTCAGGGCATAACTTAACCCCTAAAGAGTTGGTTGCTCTTTC 1111 Query 1193 TGCTAAATACTTATCCGGAGGGCACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1252 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1112 TGCCAAATACTTATCCGGAGGGAACAAGGATAAATCAATTCCGCTATTAAGATTGGCATT 1171 Query 1253 AGAAAAGGATCCTGAATACCTTCAAGCTATGATTATTCTTGGACAGGCTTTATATCAGAA 1312 |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 1172 AGAAAAAGATCCTGAATACCTTCAAGCTATGGTTATTCTTGGCCAGGCTTTATATCAGAA 1231 Query 1313 AGACCAGTTCGCGGAAGCTGCAAAATGCTTAGAGCAGGCTGCTTCAAAGCTTCTTGATAC 1372 ||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1232 AGACCAGTTTGCTGAAGCTGCAAAATACTTAGAGCTGGCTGCTTCAAAGCTTCTTGATAC 1291 Query 1373 CAGTCCAACCGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1432 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1292 CAGTCCAACAGAAGTTGAAGAAGTCGATCTTTTAATTGTTGCATCCCAATGGGCAGGTGT 1351 Query 1433 CTCCAATATACGTCAGGGGAAGACATCAGAAGGAATCACACACCTTGAAAGAGTAGCAAA 1492 ||||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 1352 CTCCAATATTCGCCAGGGAAAGACATCGGAAGGAATCACTCACCTTGAAAGAGTAGCAAA 1411 Query 1493 CATGAAAGAGCCCGACGATCCTAAGAGCAAAGCTCATTACTTGGATGCATTGGTACTCTA 1552 |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1412 CATGAAAGAGCCTGACGATCCCAAGAGCAAAGCTCATTACTTGGACGCATTGGTACTCTA 1471 Query 1553 CTCAAGTGCGATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1612 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1472 CTCAAGTGCTATATTCAACGAAGGAAGGAGAGAGGAAGCAGCAAAGTATTTGAGAAGAGT 1531 Query 1613 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATGATA---C 1669 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1532 GGTGGCTTATGATCCTTCCTTCAGTGAATTGTTGAAACAATGCGAAGAAGATAATAATAC 1591 Query 1670 CATTCCCACTTCTTCTTCATCTAATTCTACCAGCAAAACTTCATAAGtttttt 1722 |||||||||||||||||||||||||||| || ||||||||||||| |||||| Sbjct 1592 CATTCCCACTTCTTCTTCATCTAATTCTGTCAACAAAACTTCATAACTTTTTT 1644 Score = 298 bits (161), Expect = 1e-79 Identities = 212/237 (89%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1 TTTCTTCACCGGAAATGGCATTTCGTAGGGTTTTActctctcacctccgccgatctcacc 60 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 TTTCCTCACCGGAAATGGCATTTCGTAGGGTTTTACTCTCTAACCTCCGCCGATCTCACC 60 Query 61 acacttgctcctctctctctcctcaccatgtctccgccacAACCCAACCTTCAATCGCGC 120 ||||||||||||||||||| |||||||| |||||||||| || || || |||||| ||| Sbjct 61 ACACTTGCTCCTCTCTCTCCCCTCACCACATCTCCGCCACGACACATCCGTCAATCACGC 120 Query 121 TCGCTCTTTTCCAATCCCGCTTCTTTTCCACTCCATCTGACCTAGATTCTGAGCTAACTC 180 ||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||| Sbjct 121 TCGGTCTTTTCCAATCCCGCTTCTTTTCCACTCCACCTGACCTCGACTCTGAGCTAACTC 180 Query 181 GATTCAGAGACGATTCAATCGCTGGCGTTGGAAGCAATGATCATGG-CTTAGAGTTC 236 || |||||||||||||| || |||| |||||| ||||| ||| | || ||||||| Sbjct 181 GACTCAGAGACGATTCAGTCACTGGATTTGGAACCAATGGTCACGAACT-AGAGTTC 236 > Ahg937062 jgi|Araly1|937062|scaffold_501253.1 Length=1058 Score = 1628 bits (881), Expect = 0.0 Identities = 991/1045 (95%), Gaps = 3/1045 (0%) Strand=Plus/Plus Query 681 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGGATAACTAGCATCAGAAGAATGTCACTTGATCATCATCCTGGATTTGATTCGGGTGGA 60 Query 741 GCTTTATGGTTTCAGAATTTGACCGAAATTCCCAATGGTCTTTATGGTCCACTTTTCCCC 800 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 61 GCTTTATGGTTTCAGAATTTGACCGAAGTTCCCAATGGTCTTTATGGTCCTCTTTTCCCC 120 Query 801 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTTTAATAGCTGGTTTGCATTACACAAACACACAGATAACTTTTACAGCATCCTCAGTT 180 Query 861 CACAAAGTTGATAAATTCACGGAATTGGCAAAAGCTTACAAGACATTTCTGAATCTTTTG 920 |||||||||||||||||| ||||| |||||||| ||| ||||| ||| ||||| ||||| Sbjct 181 CACAAAGTTGATAAATTCGCGGAACTGGCAAAAACTTTCAAGATGTTTTTGAATTTTTTG 240 Query 921 ACATGTGCTCTGTATTTCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 980 |||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACATTTGCTCTTTATGGCCTTTCATTCCAAATGCCTCAGGGAAGTCTACTCTACTGGGCT 300 Query 981 ACCAATTTGTCATTCAGCATTGCTCAGCAATCAATCCTTAACCATCCCGTTGTAAGTGCA 1040 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 301 ACCAATTTGTCATTCAGCATAGCTCAGCAATCAATCCTTAACCACCCCGTTGTAAGTGCA 360 Query 1041 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAAGCTGGCAATCCTATATTAACA 1100 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 AAGTTGGGCCTACAAGCAAATGACTCTGTACAGAAAGAGGCTGGCAATCCTATATTAACA 420 Query 1101 AATATAAATGAAGGGAAACTCACTGATCCATCCTCGAAAGGACGGTTGATCTCAGTGCAT 1160 || || ||||||| ||||| |||||| ||||||| |||||||| |||||||||| |||| Sbjct 421 AACATTAATGAAGCAAAACTTACTGATTCATCCTCAAAAGGACGCTTGATCTCAGGGCAT 480 Query 1161 AACTTAACCCCTAAGGAGTTGGTTGCTCTTTCTGCTAAATACTTATCCGGAGGGCACAAG 1220 |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 481 AACTTAACCCCTAAAGAGTTGGTTGCTCTTTCTGCCAAATACTTATCCGGAGGGAACAAG 540 Query 1221 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAGGATCCTGAATACCTTCAAGCT 1280 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 541 GATAAATCAATTCCGCTATTAAGATTGGCATTAGAAAAAGATCCTGAATACCTTCAAGCT 600 Query 1281 ATGATTATTCTTGGACAGGCTTTATATCAGAAAGACCAGTTCGCGGAAGCTGCAAAATGC 1340 ||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||| | Sbjct 601 ATGGTTATTCTTGGCCAGGCTTTATATCAGAAAGACCAGTTTGCTGAAGCTGCAAAATAC 660 Query 1341 TTAGAGCAGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACCGAAGTTGAAGAAGTCGAT 1400 ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 661 TTAGAGCTGGCTGCTTCAAAGCTTCTTGATACCAGTCCAACAGAAGTTGAAGAAGTCGAT 720 Query 1401 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATACGTCAGGGGAAGACATCA 1460 ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 721 CTTTTAATTGTTGCATCCCAATGGGCAGGTGTCTCCAATATTCGCCAGGGAAAGACATCG 780 Query 1461 GAAGGAATCACACACCTTGAAAGAGTAGCAAACATGAAAGAGCCCGACGATCCTAAGAGC 1520 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 781 GAAGGAATCACTCACCTTGAAAGAGTAGCAAACATGAAAGAGCCTGACGATCCCAAGAGC 840 Query 1521 AAAGCTCATTACTTGGATGCATTGGTACTCTACTCAAGTGCGATATTCAACGAAGGAAGG 1580 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 841 AAAGCTCATTACTTGGACGCATTGGTACTCTACTCAAGTGCTATATTCAACGAAGGAAGG 900 Query 1581 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 1640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 AGAGAGGAAGCAGCAAAGTATTTGAGAAGAGTGGTGGCTTATGATCCTTCCTTCAGTGAA 960 Query 1641 TTGTTGAAACAATGCGAAGAAGATGATA---CCATTCCCACTTCTTCTTCATCTAATTCT 1697 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 961 TTGTTGAAACAATGCGAAGAAGATAATAATACCATTCCCACTTCTTCTTCATCTAATTCT 1020 Query 1698 ACCAGCAAAACTTCATAAGtttttt 1722 || ||||||||||||| |||||| Sbjct 1021 GTCAACAAAACTTCATAACTTTTTT 1045 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71685841090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5