BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44380.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484859 jgi|Araly1|484859|fgenesh2_kg.5__851__AT3G44380.1 1027 0.0
> Ahg484859 jgi|Araly1|484859|fgenesh2_kg.5__851__AT3G44380.1
Length=641
Score = 1027 bits (556), Expect = 0.0
Identities = 613/641 (96%), Gaps = 1/641 (0%)
Strand=Plus/Plus
Query 15 AAAATCGAACTTCTCCTCTTCAAATCGCAAGGGCATAGACTGTAATTTCGAGATGGGGTC 74
||||||||| |||||||| | |||| ||||| ||||||||||||||| | |||||||||
Sbjct 1 AAAATCGAAGTTCTCCTCCACGAATCACAAGGACATAGACTGTAATTTTGCGATGGGGTC 60
Query 75 AAGGGACCAAAAGGTAAAATGGAGCTGGAGCTCAGCCTTAATCGGAGCAGCATCAGCAAC 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGGACCAAAAGGTAAAATGGAGCTGGAGCTCAGCCTTAATCGGAGCAGCATCAGCAAC 120
Query 135 AGCAGCAGCTTCACTCCTAAGCGCCAAGCCAAAAGATCCAACATTCCACCTTATCTCCAT 194
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCAGCAGCTTCTCTCCTAAGTGCCAAGCCAAAAGATCCAACATTCCACCTTATCTCCAT 180
Query 195 AGACCTTACCTCACTGAAACTAAACCTCCCTGTCCTCGACGCAGAGCTAATGCTTACCGT 254
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACCTAACCTCACTGAAACTAAACCTCCCTGTCCTCGACGCAGAGCTAATGCTTACCGT 240
Query 255 ACACGTCACTAACCCTAACATCGCAGCCATCCATTACTCCTCCACCAAGATGACAATCCT 314
||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||
Sbjct 241 ACACGTCACTAACCCTAACGTCGCACCCATCCGTTACTCCTCCACCACCATGACAATCCT 300
Query 315 CTACGATGGCACGGTTCTTGGCTCAGCTGAGGTCAAAGCTGGCTCGCAACCGGCGAGATC 374
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 CTACGATGGCACGGTTCTTGGCTCGGCTGAGGTCAAAGCTGGCTCGCAACCGGCGAGATC 360
Query 375 TTGTCAGCTTCTCCGGCTACCGGCGCGTCTGGACGGTATGGAGCTTGCGCAACACGCGCG 434
||| |||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 361 TTGCCAGCTTCTCCGGTTACCGGCGCGTCTCGATGGTATGGAGCTTGCGCAGCACGCGCG 420
Query 435 GCAGTTCTTTTCTGACGTGGCGAATAGAGAGATGAAACTTGAGGCTAAGCTTACTATTGA 494
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GCAGTTCTTTTCTGACGTGGCGAAGAGAGAGATGAAACTTGAGGCTAAGCTTACTATTGA 480
Query 495 AGGAGCGGCTAAGGTTTTGTGGTGGGATCATAGTTTTAGGGTTCACGTGGATAGTTTTGT 554
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGAGCGGCTAAGGTTATGTGGTGGGATCATAGTTTTAGGGTTCACGTGGATAGTTTTGT 540
Query 555 CACCGTTGATCCTGTTTTTCTTGATGTTATTGGTCAAGAGAATAAGTCTCAGATGGATTT 614
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCGTTGATCCTGTTTTTCTTGATGTTATTGGTCAAGAGAATAAGTCTCAGATGGATTT 600
Query 615 GTTTCTTACTTAAAAAATAA-TTATTGTTGTACCATTTTTA 654
||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 601 GTTTCTTACTTAAAAGATAAATTATTATTGTACCATTTTTA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5