BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44428.1
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg948035 jgi|Araly1|948035|scaffold_704264.1 457 3e-128
Ahg937066 jgi|Araly1|937066|scaffold_501257.1 457 3e-128
> Ahg948035 jgi|Araly1|948035|scaffold_704264.1
Length=376
Score = 457 bits (247), Expect = 3e-128
Identities = 309/338 (91%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 21 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
Query 61 TCACTTTCTGA---TACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116
||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| | |
Sbjct 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCAATGACTCCAATGTCAGAGA-A 139
Query 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176
||||||||| ||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTATCAGACGCAAGAAAAATTCCAGATTGTGT 199
Query 177 AGAGGCAGTGAAACAAGGCAT-TGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235
||| ||| |||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 200 AGAAGCACTGAAACAAGGCAAAT-TGAAAGATATAAAAAAAGAATGTTGCATTATTCTAC 258
Query 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295
||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 259 TCGGTCTTCCCGAAGATTGTTTTGGAATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318
Query 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333
||||||| || |||||||||||||||||||||||||||
Sbjct 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
> Ahg937066 jgi|Araly1|937066|scaffold_501257.1
Length=376
Score = 457 bits (247), Expect = 3e-128
Identities = 309/338 (91%), Gaps = 7/338 (2%)
Strand=Plus/Plus
Query 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 21 ATGGGTGAGAGGATACAAAGAGTGTGTATGTCTATCTTAACAGTGATGGTTGTGATGCTA 80
Query 61 TCACTTTCT---GATACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCTATGGCTCCAATGTCAGAGA-A 139
Query 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176
||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTGGCAGACGCAAGAAAAATTCCTGATTGTGT 199
Query 177 AGAGGCAGTGAAACAAGGC-ATTGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235
|||| || | ||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 200 AGAGTCACTAAAACAAGGCAATT-TGAAAGATATAAAAAAAGAATGTTGCATTATTCTAC 258
Query 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
Sbjct 259 TCGGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318
Query 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333
||||||| || |||||||||||||||||||||||||||
Sbjct 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11790077001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5