BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44428.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value Ahg948035 jgi|Araly1|948035|scaffold_704264.1 457 3e-128 Ahg937066 jgi|Araly1|937066|scaffold_501257.1 457 3e-128 > Ahg948035 jgi|Araly1|948035|scaffold_704264.1 Length=376 Score = 457 bits (247), Expect = 3e-128 Identities = 309/338 (91%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 21 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTGATGCTA 80 Query 61 TCACTTTCTGA---TACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116 ||||||||||| ||||||||||||||||||||| || ||| ||||||||||||| | | Sbjct 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCAATGACTCCAATGTCAGAGA-A 139 Query 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176 ||||||||| ||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTATCAGACGCAAGAAAAATTCCAGATTGTGT 199 Query 177 AGAGGCAGTGAAACAAGGCAT-TGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235 ||| ||| |||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 200 AGAAGCACTGAAACAAGGCAAAT-TGAAAGATATAAAAAAAGAATGTTGCATTATTCTAC 258 Query 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295 ||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| | Sbjct 259 TCGGTCTTCCCGAAGATTGTTTTGGAATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318 Query 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333 ||||||| || ||||||||||||||||||||||||||| Sbjct 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356 > Ahg937066 jgi|Araly1|937066|scaffold_501257.1 Length=376 Score = 457 bits (247), Expect = 3e-128 Identities = 309/338 (91%), Gaps = 7/338 (2%) Strand=Plus/Plus Query 1 ATGGGTGAGAACATACAAAGAGTGTGTGCGTCTATCTTAACAGTGATGGTTGTAATACTA 60 |||||||||| ||||||||||||||| |||||||||||||||||||||||| || ||| Sbjct 21 ATGGGTGAGAGGATACAAAGAGTGTGTATGTCTATCTTAACAGTGATGGTTGTGATGCTA 80 Query 61 TCACTTTCT---GATACGAAAGGTAATAATGATTTGGCTATGGCTCCAATGTCAGA-ACA 116 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 81 TCACTTTCTGAAGATACGAAAGGTAATAATGATTTTGCTATGGCTCCAATGTCAGAGA-A 139 Query 117 AGGGTTGCTTCCAAATCCATTGTCTTGTGTGGCTGACGCAAGAAAAATTCCAGATTGTGT 176 ||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct 140 AGGGTTGCTGCCAAATCCAATGTCTTGTGTGGCAGACGCAAGAAAAATTCCTGATTGTGT 199 Query 177 AGAGGCAGTGAAACAAGGC-ATTGTGAAAGATATAAAACAAGAATGTTGCATTATTCTAC 235 |||| || | ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 200 AGAGTCACTAAAACAAGGCAATT-TGAAAGATATAAAAAAAGAATGTTGCATTATTCTAC 258 Query 236 TCGGTCTTCCCGAAGTTTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTACCGTATTA 295 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | Sbjct 259 TCGGTCTTCCCGAAGATTGTTTTGGGATTTTATTTCCTATGCGTTTCTACTATCGTGTCG 318 Query 296 TACTTAAGATGACATGCAAATTAATAGGCATTTTTTAA 333 ||||||| || ||||||||||||||||||||||||||| Sbjct 319 TACTTAAAATTACATGCAAATTAATAGGCATTTTTTAA 356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11790077001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5