BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44450.1
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484861 jgi|Araly1|484861|fgenesh2_kg.5__853__AT3G44450.1 872 0.0
> Ahg484861 jgi|Araly1|484861|fgenesh2_kg.5__853__AT3G44450.1
Length=578
Score = 872 bits (472), Expect = 0.0
Identities = 550/586 (94%), Gaps = 12/586 (2%)
Strand=Plus/Plus
Query 1 TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTCGAAGCCAATaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1 TATTTCTCTCTAAATCTCAACATTTTTATATATACAACACACACGTTGAAACCAATAAAA 60
Query 61 atctctactacaaaagtaaaaataaagaaaagagttcaaaaTGAAGAACACCAATTTGCC 120
||||||| | | || ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 61 ATCTCTATTGC--AA--AAAAATACAGAAAAGAGTTCAAAATGAAGAACACCCATTTGCC 116
Query 121 TGAAGAAACCAAGGAACCAATCTCTCCAGGATCTTCTCACCGGAAACAAAACAAGACAGG 180
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 117 TGAAGAATCCAAGGAACCAATCTCTCCGGGATCTTCTCACCGGAAACAAAACAAGACAGC 176
Query 181 TAC-AAAGACATGTTTCCCGGAAACAACGGTGTTGTCAGGACGTGATAGGCTAAAGAGAC 239
|| ||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 177 CACGAAA-ACATGTTTGCCGGAAACAACGGTGTTGTCGGGACGTGAGAGGCTAAAGAGAC 235
Query 240 ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGATAGTTGGGGAAAAGAAGGATTGC 299
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 236 ATAGAGAAGAGGTTGCCGGAAAAGTTCCTATACCGGAGAGTTGGGGAAAAGAAGGATTAC 295
Query 300 TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACGTCTAGCCAGATTGTCT 359
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 296 TTATGGGATGGATGGATTTTTCGACCTTCGACGCTGCTTTTACTTCGAGCCAGATTGTTT 355
Query 360 CTGCTCGAGCTGCGTTAATGGCTGACTCAGGAGACGATGCCGG-AGCTAGAGGAAGTAGG 418
|||||||||||||| ||||||||||| | |||||||||||||| | ||||||||||||||
Sbjct 356 CTGCTCGAGCTGCGCTAATGGCTGACGCCGGAGACGATGCCGGCA-CTAGAGGAAGTAGG 414
Query 419 CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCTCAACGCCTTCGAGTTGAGAGTTCTTGTTGATTTCATTGTCTTAGAGAAATGTTTATG 474
Query 479 -AAATAATAC-TCTCATCATGATTTTGAATGTTATTATTAGATACCTTATCTTCACATTG 536
||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 475 CAAATAATACCTCTCGTCATGATTTTGAATGTT-T-ATTAGATACCTTATCTTCACATTG 532
Query 537 ATTTTGAAATTTTGAACCATTGATACAATTATTCAAAGTTTCATAT 582
|||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 533 ATTTTGGAATTTTGAACTATTGATACAATTATTCAAAGTTTCATAT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21328974251
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5