BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44460.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484862 jgi|Araly1|484862|fgenesh2_kg.5__854__AT3G44460.1 1796 0.0
> Ahg484862 jgi|Araly1|484862|fgenesh2_kg.5__854__AT3G44460.1
Length=1225
Score = 1796 bits (972), Expect = 0.0
Identities = 1159/1244 (93%), Gaps = 33/1244 (3%)
Strand=Plus/Plus
Query 2 TTTTAAAAGTATCAGTTTACACTGACACAATCCTTAACTATTTTCCTTTGTTCTTCTTCA 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTAAAAGTATCAGTTTCCACTGACACAATCCTTAACTATTTTCCTTTGTTCTTCTTCA 60
Query 62 TCTTTATTACAC-AtttttttCAAGGT--C----TACCAAACGATGTCGGTTTTCGAATC 114
|||||||||||| |||||||||||||| | |||||||||||||||||||| |||||
Sbjct 61 TCTTTATTACACAATTTTTTTCAAGGTAACAAATTACCAAACGATGTCGGTTTTTGAATC 120
Query 115 GGAGACTTCGAACTTCCACGTCTACAACAACCACGAAATCCAAACGCAACCGCAAATGCA 174
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 121 CGAGACTTCGACCTTCCACGTCTACAACAACCACGAAATCCAAACACAACCGCAGATGCA 180
Query 175 AACGTTTCTGTCGGAGGAGGAACCGGTAGGGAGACAGAACTCGATTTTGTCACTAACTCT 234
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AACGTTTCTGTCGGAGGAGGAACCGGTAGGGAGACAAAACTCGATTTTGTCACTAACTCT 240
Query 235 TGACGAAATTCAGATGAAAAGCGGTAAGAGCTTTGGAGCGATGAACATGGACGAGTTCCT 294
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGACGAAATTCAGATGAAAAGTGGTAAGAGCTTTGGAGCGATGAACATGGACGAGTTCCT 300
Query 295 AGCGAACTTGTGGACAACCGTTGAAGAAAACG---ACAAC-GAAGGAGGTGGGGCTCACA 350
||||||||| |||||||||||||||||||||| ||||| ||| |||||||| | |||
Sbjct 301 AGCGAACTTATGGACAACCGTTGAAGAAAACGACAACAACGGAA-GAGGTGGGCCCCACC 359
Query 351 ACGACGGAGAGAAGCCGGCGGTGCTGCCACGTCAAGGGTCGTTGTCCCTCCCTGTGCCTT 410
||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 360 ACGACCGAGAGAAACCGGCGGTGCTTCCACGTCAAGGGTCGTTGTCCCTCCCCGTGCCTT 419
Query 411 TATGCAAGAAAACGGTCGACGAGGTTTGGCTCGAGATACAAAACGGTGTACAACAACATC 470
||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 420 TATGCAAGAAAACCGTGGACGAGGTTTGGCTAGAGATACAAAACGGCGTACAACAACATC 479
Query 471 CACCGTCGTCGAATTCCGGTCAAAACTCCGCCGAAAATATTCGCCGGCAACAAACCCTTG 530
|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 480 CACCGTCGTCAAATTCCGGTCAAAACTCCGACGAAGATATTCGCCGGCAACAAACTCTTG 539
Query 531 GTGAGATCACTCTCGAGGATTTTCTTGTTAAGGCTGGTGTTGTACAAGAACCGTTGAAGA 590
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 540 GTGAGATCACGCTCGAGGATTTTCTTGTTAAAGCTGGTGTTGTACAAGAACCATTGAAGA 599
Query 591 CAACGATGAGGATGTCGAGTTCTGATTTTGGTTATAACCCCGAGTTTGGAGTTGGTTTAC 650
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 CAACGATGAGGATGTCGAGTTCTGATTTTGGTTATAACCCGGAGTTTGGAGTTGGTTTAC 659
Query 651 ATTGTCAGAACCAAAACAATTATGGTGATAACCGGTCGGTTTATAGTGAAAACCGACCGT 710
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 660 ATTGTCAGAACCAAAACAATTATGGTGATAACCGGTCGGTTTATAGTGATAACCGGCCGT 719
Query 711 TTTACTCGGTTTTGGGAGAATCTTCAAGCTGTATGACCGGGAATGGGAGGAGTAATCAGT 770
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TTTACTCGGTTTTGGGGGAATCTTCAAGCTGTATGACCGGGAATGGGAGAAGTAATCAGT 779
Query 771 ATCTGACCGGTTTAGATGCTTTTCGGATCAAGAAACGGATAATTGATGGTCCACCTGAAA 830
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTTAACCGGTTTAGATGCTTTTCGGATCAAGAAACGGATAATTGATGGTCCACCTGAAA 839
Query 831 TTTTGATGGAGCGGAGACAACGGCGAATGATTAAAAACCGCGAATCTGCGGCTCGGTCTC 890
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 840 TTTTGATGGAGCGGAGACAACGGCGGATGATTAAAAACCGTGAATCTGCGGCTCGGTCTC 899
Query 891 GAGCCCGGAGACAAGCTTATACTGTGGAACTGGAGTTGGAATTGAACAACCTCACGGAAG 950
||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 900 GAGCCCGGAGACAGGCTTATACTGTTGAATTGGAGTTGGAACTGAACAACCTCACGGAAG 959
Query 951 AAAACACGAAGCTGAAGGAAATTGTGGAGgaaaatgagaagaaaagaagacaagagataa 1010
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 960 AAAACACAAAGCTGAAGGAAATTGTGGAGGAAAATGAAAAGAAAAGAAGGCAAGAGATAA 1019
Query 1011 taagtagaagcaaacaagtgactaaagagaagagcggagaCAAATTGAGAAAGATTCGGA 1070
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 TAAATAGAAGCAAACAAGTGACTAAAGAGAAGAAAGGAGACAAATTGAGAAAGATTCGGA 1079
Query 1071 GGATGGCCAGTGCCGGGTGGTAAATAGATATGAGAGTTTGTGTAATTTACATATGATATT 1130
||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1080 GGATGGCTAGTGCAGGGTGGTAAATAGATATGAGAGTTTGTGTAATTTGCATATAATAT- 1138
Query 1131 TTATTGATCGTTTCTATCTATACACATAAATATTTGTATCTATATTAT--ATTTTGAGAC 1188
||| || | | ||| ||||||||||||||||| || | ||||||||||
Sbjct 1139 --ATT-AT-------A-C-ATA----TAAATATTTGTATCTATTTTTTTTATTTTGAGAC 1182
Query 1189 AAACA-TGGAATTTGTGTATATAGGATCATTTCTTTTTATATAT 1231
||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AAA-AGTGGAATTTGTGTATATAGGATCATTTCTTTTTATATAT 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5