BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44510.2
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484863 jgi|Araly1|484863|fgenesh2_kg.5__855__AT3G44510.1 1550 0.0
> Ahg484863 jgi|Araly1|484863|fgenesh2_kg.5__855__AT3G44510.1
Length=1150
Score = 1550 bits (839), Expect = 0.0
Identities = 1043/1137 (92%), Gaps = 32/1137 (3%)
Strand=Plus/Plus
Query 60 ATCTTCAAGGAAGAATCAAACTTCA-CGATGGTAGATACTTGGCCTACAAGGAAAGAGGT 118
||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 21 ATCCTCAAGGAAGAATCAAAC-TAAGCGATGGTAGATACTTGGCCTACAAGGAAAGAGGT 79
Query 119 GTCCCCAAGGATGATGCAAAGTTCA-CGATCGTTCTTGTTCATGGATTTGGTAGCTCCAA 177
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 80 GTCCCCAAGGATGATGCAAAGTTCATC-ATCGTTCTTGTTCATGGATTTGGTAGCTCCAA 138
Query 178 GGATATGAACTTCAATGTCTCAC-------A----A-GAGCTTGTGAATGAAATTGGTAT 225
|||||||||||||||||||||| | | ||| |||||||||||||||| ||
Sbjct 139 AGATATGAACTTCAATGTCTCACAATTATAATCTCAGGAGTTTGTGAATGAAATTGGGAT 198
Query 226 ATACTTTGTGCTATATGATCGAGCTGGTTACGGAGAGAGCGACCCGAATCCTAAACGTTC 285
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 199 ATACTTTGTGCTATACGATCGAGCTGGTTACGGAGAGAGTGACCCGAATCCGAAACGTTC 258
Query 286 GTTGAAGAGTGAAGC-CTACGATGTTCAGGAACTGGCGGAT-GGTTTAGAGATCGGATCC 343
||||||||||||||| | |||||||||| |||||||||||| || |||||||||||||||
Sbjct 259 GTTGAAGAGTGAAGCAC-ACGATGTTCAAGAACTGGCGGATCGG-TTAGAGATCGGATCC 316
Query 344 AGGTTTTATTTGATTGGAATTTCAATGGGTTCCTACACTGTTTGGAGCTGCCTTAAACAT 403
||||||||| | ||||| || ||||||||||| |||||| ||||||| ||||||||||||
Sbjct 317 AGGTTTTATCTCATTGGTATCTCAATGGGTTCATACACTATTTGGAGTTGCCTTAAACAT 376
Query 404 ATTCCTCAAAGGTTAGCAGGAGTGGCAATGGTGGCTCCGGTGGTGAATTTCCGGTGGCCG 463
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 377 ATTCCTCAAAGGTTAGCAGGAGTGGCAATGGTGGCTCCGATGGTGAATTACCGGTGGCCA 436
Query 464 TCTATTCCAAAGAGTCTGATGCCAAAAGACTACAGAAGAGAAGTGGCGAAATGGTCTGTT 523
|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 437 TCGATTCCAAAGAGTCTGATGCAAAAAGACTACAGAAGAGAAGTGGTGAAATGGTCCGTT 496
Query 524 TGGATAGCTAACTATTTTCCGGGACTTTTGCAA-TGGTTGGTGACTCAGAACATGTTCTC 582
||| | ||||||||||||||||||||| || || |||||||||||||| ||| | |||||
Sbjct 497 TGGGTCGCTAACTATTTTCCGGGACTTCTG-AAGTGGTTGGTGACTCAAAACTTATTCTC 555
Query 583 TACAACT--TCC-ATGCTAGAGAAAAACCCTGTCTACTTCAACGACCAAGACATTGAAGT 639
||||||| | | |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 556 TACAACTAATTCGATGCTAGAGAAAAACCCTGTTTACTTCAACGACCAAGACATCGAAGT 615
Query 640 CCTTAAGCACATCA--AA-GGCTTCCCAATGCTCACTAAGGAGAAGTTACGGGAGCGCGG 696
||| ||||||| || || |||||||||||||||||||||||||||||||| || |||||
Sbjct 616 CCTCAAGCACAACACCAAAGGCTTCCCAATGCTCACTAAGGAGAAGTTACGAGAACGCGG 675
Query 697 CGTCTTCGGGACGCTGAGAAGCGATTTTTTGGTAGCATTCGGCGACTGGGACTTCGATCC 756
| | |||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 676 CATTTTCGAGACACTGAGAAGCGACTTTTTGGTGGCATTCGGCGACTGGGACTTCGATCC 735
Query 757 GGCAGACCTACCTGACCCGTCTCTGTCTGGACCGGAAAAGGGCTCTTCTTCTGTTCACAT 816
||| |||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 736 GGCCGACCTACCGGACCCGTCTCTGTCTCGACCCGAAAAGGGCTCTTTTTCTGTTCACAT 795
Query 817 ATGGCAAGGCTACGAAGACAAAGTGATGCCATTTCAGCTGCAAAGATGTTTGTGCCGCAA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 ATGGCAAGGCTACGAAGACAAAGTGATGCCATTTCAGCTGCAAAGATGTTTGTGCCGCAA 855
Query 877 GCTACCATGGATTAGGTACCATGAGGTCCCTAAAGGAGGCCACCTGATCGTGCACTACGA 936
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 856 GCTACCGTGGATTAGGTACCATGAGGTCCCTAAAGGAGGACACCTGATCGTGTACTACGA 915
Query 937 CGGCATATGTGATGCGATTTTGAAATCACTTCTTTTAGGAGAAGATCTCCCAATGTACAA 996
||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 916 CGGTGTATGCGATGCGATTTTAAAATCACTTCTTTTAGGAGAACATCTCCCAATGTACAA 975
Query 997 ACCAAAAGCTGTGATCACTGAGCCAGCTTAGAGACTAAGTTACTATTCTTAA-TTTATTC 1055
|||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 976 ACCAAAAGATGTGATCATTGAGCCAGCTTAGAGACTAAGTCACTATTCTTAAATTTTTTC 1035
Query 1056 GGTTTCTTGCTTGATTCTTTGATTTTGTTTGACAAAAATCGAATTCTCTTATTTGTAAAA 1115
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1036 GTTTTCTTGCTTGATTCTTTGATTTTGTTTGACAAAAGTCGAATTCTCTTATTTGTAAAA 1095
Query 1116 TATATATATGTACTTATGAATTTTTCATATCT-TGACATATTTATTTTATCCACTAC 1171
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1096 TATATAT--GTACTTATGAATTTTTCATATCTATGACATATTTATTTTATCCATTAC 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5