BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44540.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1 2215 0.0
Ahg941755 jgi|Araly1|941755|scaffold_602299.1 837 0.0
Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1 545 3e-154
> Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1
Length=1490
Score = 2215 bits (1199), Expect = 0.0
Identities = 1397/1494 (94%), Gaps = 8/1494 (1%)
Strand=Plus/Plus
Query 59 ATGGACTCCAATTGCATTCAGTTCCTCCATG-ACAAGACGATTCTCGTCACCGGTGTTCC 117
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTCCAATTGCATTCAGTTCCTCCA-GAACAAGACGATTCTCGTCACCGGTGTTCC 59
Query 118 CGGTTTCCTCGCCAAAGTGTTTGTGGAGAAAATATTGAGGATTCAACCAAAGGTAAAGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 60 CGGTTTCCTCGCCAAAGTGTTTGTGGAGAAAATATTGAGGATTCAACCAAACGTGAAGAA 119
Query 178 GCTTTTCCTTCTT-TTGAGAGCAGCAGACAATGAATCAGCCATGCAACGGTTTCACAGTG 236
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTTTTCCTT-TTCTTGAGAGCAGCAGACAATGAATCAGCCATGCAACGGTTTCACAGTG 178
Query 237 AGGTTTTGGAGAAAGATCTTTTTAGAGTGTTGAAAAACGCTTTAGGTGATGAGAATCTGA 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 AGGTTTTGGAGAAAGATCTTTTTAGAGTGTTGAGGAACGCTTTAGGTGATGAGAATCTGG 238
Query 297 AAGCTTTCA-TAACAGAAAAAGTCGTACCTATTCCCGGTGATATATCCGTTGATAATTTG 355
||||||| | || ||||||||||||| |||||| | |||||||| || ||||||||| ||
Sbjct 239 AAGCTTT-AGTATCAGAAAAAGTCGTCCCTATTGCGGGTGATATTTCAGTTGATAATCTG 297
Query 356 GGAGTGAAGGGTTCTGATCTCTTACAACATATGTGGAATGAGATTGATATCATTGTCAAT 415
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 GGAGTGAAGGATTCTGATCTCTTACAACATATGTGGAATGAGATCGATATCATTGTCAAT 357
Query 416 GTAGCCGCCACAACGAACTTTGATGAAAGATATGATGTTGGTCTTAGCGTCAACACATTT 475
|| ||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 358 GTCGCCGCCACAACTAACTTTGATGAAAGATATGATGTCGGTCTTAGCATCAATACATTT 417
Query 476 GGACCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTTGCTTCTTCAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 418 GGACCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTTGGTTCTCCAT 477
Query 536 GTTTCAACCGCGTATGTGCGCGGAGAGAAGTCTGGACTTTTACATGAGAAAACATTTCAC 595
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 GTCTCAACCGCGTATGTGTGCGGAGAGAAGTCTGGACTTTTACAAGAGAAAACATTTCAC 537
Query 596 ATGGGGGAGACATTGAACGGACATAGAAAATTAGTCATTGAGACCGAAATGGAGCTAATG 655
||||| || || |||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 538 ATGGGAGAAACGTTGAACGGACATGGAAAATTAGTCATTGAGACCGAGGTGGAGCTAATG 597
Query 656 AAACAAAAACTGAAAGAGCTACAGAAACAAAATTGTTCAGAAGAAGAGATTTCACAGTCT 715
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 598 AAACAAAAACTGAAAGAACTACAGAAACAAGATTGTTCGGAAGAAGAGATTTCACAGTCT 657
Query 716 ATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATGGATGGCCAAACACATATGTGTTT 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 658 ATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATGGATGGCCAAACACATATGTCTTT 717
Query 776 ACCAAATCAATGGGAGAGATGCTTCTTGGTAATTATAGAGAAAACCTTCCCATCGTTATC 835
||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||
Sbjct 718 ACCAAATCAATGGGAGAGATGCTTCTTGGTAATCATAGAGAAAATCTTCCTATTGTTATC 777
Query 836 ATCCGTCCCACAATGATCACTAGCACTTTTTCAGAACCATTTCCCGGTTGGATCGAAGGG 895
||||| ||||||||||| ||||| ||| || | |||||||||||||||||||||||||||
Sbjct 778 ATCCGCCCCACAATGATTACTAGTACTCTTGCCGAACCATTTCCCGGTTGGATCGAAGGG 837
Query 896 TTAAGAACCATAGACAGTGTGATTGTTGCATATGGCAAAGGAAGGCTTAAATGTTTTCTT 955
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTAAGAACCATAGATAGTGTGATTGTTGCATATGGCAAAGGAAGGCTTAAATGTTTTCTT 897
Query 956 GCAGATCCAAACTCAGTCCTTGATCTTATACCTGTGGACATGGTCGCAAACGCAATGGTC 1015
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 GCAGATCCAAACTCAGTCCTTGATCTTATACCTGTGGATATGGTCGCAAACGCAATGGTC 957
Query 1016 ACGGCTGCGGCAATACACGCAGGGAAGCTAGGTTCCCAGACCGTGTACCATGTCGGATCA 1075
||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 958 ACGGCTGTGGCAATACACGCAGGGAAGTTAGGCTCTCAGACCGTGTACCATGTCGGATCA 1017
Query 1076 TCTTGTAAAAACCCGATCACATTCGAACAGATTCATGATCTCGCGGCTAGCTACTTCACG 1135
|||||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1018 TCTTGTAAGAACCCGATAACATTCGAACAGATTCACGATCTCGCAGCTCGCTACTTCACC 1077
Query 1136 AAAAACCCTCTTGTTAGACGCGATGGTTCATCTAT-ACTAGTCTCCAAAGGAACTATCTT 1194
||||| ||||||||| |||| ||||||||||| || | ||||||| ||||||||||||||
Sbjct 1078 AAAAATCCTCTTGTTGGACGTGATGGTTCATCCATCA-TAGTCTCGAAAGGAACTATCTT 1136
Query 1195 GTCCACAATGGCTCAGTTCAGTTTCTACATGACCCTTCGTTACAAGCTACCTTTGCAGAT 1254
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 1137 GTCCACTATGGCTCAGTTCAGCCTCTACATGACCCTTCGTTACAAGTTACCTTTACAGAT 1196
Query 1255 GTTGCGATTGATATATGTAATTTATCCTTGGTGGAATGGTAATAAATATAAAGACATTGA 1314
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1197 ACTGCGATTGATATATGTAATTTATCCTTGGTGGGATGGAAATAAATATAAAGACATTGA 1256
Query 1315 CCGCAAGATTAAGCTGGCGATGCGGTTGGTCGACCTCTACAGACCTTATGTCTTGTTTAA 1374
|||||| ||||| ||||||||| || | ||||||||||||||||| ||||||||||||||
Sbjct 1257 CCGCAAAATTAAACTGGCGATGAGGCTAGTCGACCTCTACAGACCGTATGTCTTGTTTAA 1316
Query 1375 GGGCATATTTGACGATACGAATACTGAGAAACTGCGGTTGAAAAGAAAGGAGATTAATAA 1434
|||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1317 GGGCCTATTTGATGATACGAATACTGAGATACTACGGTTGAAAAGAAAGGAGATTAATAA 1376
Query 1435 AGAAATGTATGGTTTGTTTGAATTTGATCCAAAGTCTATTGATTGGGAGGATTATATGAC 1494
|||| |||||| ||| || || |||||||||||||||||||||||||| ||||| |||||
Sbjct 1377 AGAACTGTATGATTTATTCGACTTTGATCCAAAGTCTATTGATTGGGACGATTACATGAC 1436
Query 1495 GACCATTCATATTCCCGGCCTCATCACCTATGTACTCAAAAAATAAAACGTTAA 1548
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1437 GACCATTCATATTCCCGGCCTCATCACCTATGTACTCAAATAATAAAACGTTAA 1490
> Ahg941755 jgi|Araly1|941755|scaffold_602299.1
Length=1522
Score = 837 bits (453), Expect = 0.0
Identities = 1196/1546 (77%), Gaps = 85/1546 (5%)
Strand=Plus/Plus
Query 36 TTGGAT-AGATATAAGTTT-CTTCAATGGACTCCAATTGCATTCAGTTCCTCCATGACAA 93
|||| | ||| |||| ||| ||||||||| |||||||| |||| || ||| | ||||
Sbjct 1 TTGGTTGAGA-ATAATTTTGTTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAA 59
Query 94 GACGATTCTCGTCACCGGTGTTCCCGGTTTCCTCGCCAAAGTGTTT-GTGGAGAAAATAT 152
||| |||||| |||| || | || ||||| || ||||| || ||| || |||||||| |
Sbjct 60 GACCATTCTCATCACTGGGGCACCTGGTTTTCTTGCCAAGGT-TTTGGTAGAGAAAAT-T 117
Query 153 -TGAGGATT-CAACCAAAGGTAAAGAAGCTTTTCCTTCTTTTGAGAGCAGCAGAC-AATG 209
| ||| || |||||||| || |||||| | | |||||| |||||||| | ||| ||
Sbjct 118 CTAAGG-TTGCAACCAAATGTGAAGAAGATGTACCTTCTGTTGAGAGCTCCCGACGAA-A 175
Query 210 AATCAGCCATGCAACGGTT-TCACAGTGAGGTTTTGGAGAAAGATCTTTTTAGAGTGTTG 268
|||||||||||||||| || | | | ||||||| | |||| ||| || |||| |||||||
Sbjct 176 AATCAGCCATGCAACGCTTAT-ATACTGAGGTTATAGAGATAGACCTCTTTAAAGTGTTG 234
Query 269 AAAAACGCTTTAGGTGATGAGAATC-TGAAAGCTTTCATAACAG-AAAAAGTCGTACCTA 326
| |||| | ||||||| ||||| | |||| || || | | | ||||| | |||||
Sbjct 235 AGGAACGATCTAGGTGAAGAGAA-CTTGAATGCCTTGGT-GCGGAAAAAAATTGTACCGG 292
Query 327 TTCCCGGTGATATATCCG-TTGATAATTTGGGAGTGAAGGGTTCTGATCTCTTACAACAT 385
|||| |||||||||| || | |||||||||||| |||| | | |||||| |||||| |
Sbjct 293 TTCCAGGTGATATAT-CGATCGATAATTTGGGACTGAAAGACACCGATCTCATACAACGT 351
Query 386 ATGTGGAATGAGATTGATATCATTGTCAATGTAGCCGCCACAACGAACTTT-GATGAAAG 444
|||||| ||||||||||||||| |||| | || ||||| || || ||| ||||||||
Sbjct 352 TTGTGGAGTGAGATTGATATCATAATCAACATTGCTGCCACGAC-AAATTTCGATGAAAG 410
Query 445 ATATGATGTTGGTCTTAGCG-TCAACACATTTGGA-CCGCTCAATGTCCTCAACTTTGCC 502
||||||| |||||||| | | |||| ||||||||| || || ||||| |||||||| |||
Sbjct 411 ATATGATATTGGTCTT-GGGATCAATACATTTGGAGCC-CTTAATGTTCTCAACTTCGCC 468
Query 503 AAGAAGTGTGTTAAAGGACAGTTGCTTCTTCATGTTTCAACCGCGTATGTGCGCGGAG-A 561
|| ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||||| |
Sbjct 469 AAAAAGTGCGTTAAAGGACAATTGCTTCTCCATGTCTCGACCGCGTATGTAAGCGGAGAA 528
Query 562 GAAGTCTGGACTT-TTACAT-GAGAAAACATTTC-ACATGGGGGAGACAT-TGAACGGAC 617
|| || || || |||| | |||||| || ||| | ||||||||||| | | | || |
Sbjct 529 CAA-TCCGG-GTTATTAC-TAGAGAAACCA-TTCAAGATGGGGGAGAC-TCTCAGCGAAA 583
Query 618 ATAGAAAATTAGTCATTGAGACCGAAATG-GAGCTAATGAAACAAAAACTGAAAGAGCTA 676
| | ||| ||| ||| | | | || | || ||||||||||| ||| ||||||||||
Sbjct 584 AGCGGAAACTAGACATCAATATAG-AACGTGAACTAATGAAACAGAAATTGAAAGAGCT- 641
Query 677 CAGAAACAAAATTGTTCAGAAGAAGAGATTTCACAGTCTATGAAAGATCTTGGAATGTCA 736
||| ||||||| ||||||||||| ||||| | ||||||||| |||||||| ||
Sbjct 642 -----TCAAGATTGTTCTGAAGAAGAGATCTCACAAACAATGAAAGATTTTGGAATGGCA 696
Query 737 AGGGCAAAGCTTCATGGATGGCCAAACACATATGTGTTTACCAAATCAATGGGAGAGATG 796
|||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||
Sbjct 697 AGGGCAAAGCTTCATGGATGGCCAAATACATATGTATTCACCAAAGCAATGGGAGAGATG 756
Query 797 CTTCTTGGTAATTATAGAGAAAACCTTCCCA-TCGTTATCATCCGTCCCACAATGATCAC 855
|| | || || ||||||||||| || ||| | |||||||| ||||| |||||||| ||
Sbjct 757 CTAATGGGAAAATATAGAGAAAAT-TTGCCACTTGTTATCATACGTCCAACAATGATTAC 815
Query 856 TAGCACTTTTTCAGAACCATTTCCCGGTTGGATCGAAGGGTT-AAGAACCAT-AGACAGT 913
||| ||| || | |||||||| ||||||||||| |||||||| || ||| || ||| |||
Sbjct 816 TAGTACTCTTGCCGAACCATTCCCCGGTTGGATTGAAGGGTTGAA-AAC-ATTAGATAGT 873
Query 914 GTGATTGTTGCATATGGCAAAGGAAGGCTTAAATGTTTTCTTGCAGATCCAAACTCAGTC 973
||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 874 GTGATTGTTGCATATGGTAAAGGAAGGCTTAAATGTTTTCTTGCGGATTCAAACTCAGTT 933
Query 974 CTTGATCTTATACCTGTGGACATGGTCGCAAACGCAATGGTCACGGCTGCGGCAATACAC 1033
|||| |||||||| | |||||||| | ||| || ||| | | || || ||| | |
Sbjct 934 TTTGACCTTATACCGGCAGACATGGTGGTAAATGCGATGATTGCAGC--CG-CAACAG-C 989
Query 1034 GCA--GGGAAGCTA--GG--TTCCCAGACCGTGTACCATGTCGGATCATCTTGTAAAAAC 1087
|| ||| || || || ||| || | | || |||||||| || |||||||| ||
Sbjct 990 TCATTGGGGAGATACCGGGATTC--AGGCAATATATCATGTCGGTTCTTCTTGTAAGAAT 1047
Query 1088 CCGATCACATTCGAACAGA-TTCATGATCTCGCGGCTAGCTACTTCACGAAAAACCCTCT 1146
||| |||| || | ||| | |||| ||| || ||||| | ||||| | ||| |||||
Sbjct 1048 CCGGTCACGTTTGGACA-ACTTCACGATATCACGGCTCGTTACTTTGCTAAACGTCCTCT 1106
Query 1147 TGTTAGACGCGA-TGGTTCATCTAT-ACTAGTCTCCAAAGGAACTATCTTGTCCACAATG 1204
||| | || || ||| || | || | |||| |||||||||| || |||||||| |||
Sbjct 1107 GGTTGGTCG-GAATGGCTCGCCAATCA-TAGTGACCAAAGGAACCATTTTGTCCACTATG 1164
Query 1205 GCTCAGTTCAGTTTCTACATGACCCTTCGTTACAAGCTACCTTTGCAGATG-TTGCGATT 1263
||||| ||||| ||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1165 GCTCAATTCAGCCTCTACATGACCCTTCGTTACAAGCTTCCTTTACAGATACTT-CGATT 1223
Query 1264 GATATATGTAATTTATCCTTGGTGGAATGGTA-ATAAATATAAAGACATT-GACCGCAAG 1321
|||| || || ||||||| ||| | | || | |||| || || ||| | | ||| ||
Sbjct 1224 GATAAATATAGTTTATCCATGGAGTCACGG-AGATAACTACAATGACCTCAG-CCGAAAA 1281
Query 1322 ATTAAGCTGGCGATGCGGTTGGTCGACCTCTAC-AGACCTTA-TGT-CTTGTTTAAGGGC 1378
|| ||||| || ||||| | || || || ||| || ||||| | | || || |||||
Sbjct 1282 ATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAG-CCTTACT-TACTC-TTCCAGGGC 1338
Query 1379 ATATTTGACGATACGAATACTGAGAA-ACTGCGGTTGAAAAGAAAGGAGATTAAT-AAAG 1436
|||||||| ||| ||||| || || |||||| ||||||||||||||| || | ||||
Sbjct 1339 ATATTTGATGATTTAAATACGGA-AAGACTGCGAATGAAAAGAAAGGAGAATA-TCAAAG 1396
Query 1437 AAAT-GTATGGTTTGTTTGAATTTGATCCAAAGTCTATTGATTGGGAGGATTATATGACG 1495
| | | |||| | ||| || || ||||| ||||| ||||||||||| ||||||| ||
Sbjct 1397 AGTTAG-ATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTGGGACAATTATATCACA 1455
Query 1496 ACCATTCATATTCCCGGCCTCATCACCTATGTACTCAAAAAATAAA 1541
| || || ||||| ||||||||||||||||| || ||| ||||||
Sbjct 1456 AACACACACATTCCTGGCCTCATCACCTATGTGCTTAAACAATAAA 1501
> Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1
Length=1501
Score = 545 bits (295), Expect = 3e-154
Identities = 826/1075 (77%), Gaps = 65/1075 (6%)
Strand=Plus/Plus
Query 57 CAATGGACTCCAATTGCATTCAGTTCCTCCATGACAAGACGATTCTCGTCACCGGTGTTC 116
||||||| | |||||| |||| || || || ||||||||||||| ||||| || |
Sbjct 42 CAATGGAATTCAATTGTGTTCATTTTCTTCAAAACAAGACGATTCTTGTCACAGGAGCAA 101
Query 117 CCGGTTTCCTCGCCAAAGTGTTTGTGGAGAAAATATTGAGGA-TTCAACCAAAGGTAAAG 175
|||||||||| ||||| || |||||||||||||| |||| || | |||||||| || ||
Sbjct 102 CCGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAATTTTGA-GAGTACAACCAAATGTGAAT 160
Query 176 AAGCTTTTCCTTC-TTTTGAGAGCAGCAGACAATGAATCAGCCATGCAACGGTTTCACAG 234
||||| | || || | |||||||| | |||| ||| | || | | |||| || | ||
Sbjct 161 AAGCTGTACC-TCGTGGTGAGAGCATCCGACACTGACGCCGCGACGAAACGCTTACGCAC 219
Query 235 TGAGGTTTTGGAGAAAGATCTTTTT-AGAGTGTTGAA---AAACGCT-TTAGGTGATGAG 289
|||| || ||||||||||||||| || ||||| || | | | | || || |||||
Sbjct 220 AGAGGCCTTCGAGAAAGATCTTTTTAAG-GTGTT-AAGGGAGA-G-TCTT-GGCGATGAA 274
Query 290 AATCTGAA-AGCTTTCATAACAGAAAAAGTCGTACCTATTC-CCGGTGATATATCCG-TT 346
||| | || | | || | | |||||||| || || || | |||||||| | || |
Sbjct 275 AATTTCAATA-CATTGTTGTCCGAAAAAGTTGT-CCCGGTCGCAGGTGATAT-TGCGATG 331
Query 347 GATAATTT-GGGAGTGAAGGGTTCTGATCTCTTACAACATATGTGGAATGAGATTGATAT 405
||| |||| || | |||||| ||| | ||| | ||| |||| || || || |||||
Sbjct 332 GATCATTTAGGCA-TGAAGGACTCTAAACTCAGAGAACGTATGCAAAAAGAAATCGATAT 390
Query 406 CATTGTCAATGTAGCCGCCACAACGAACTTTGATGAAAGATATGATGTTGGTCTTAGCGT 465
|||| ||||| || |||||||| || ||||| || |||||||||||||||||| | |
Sbjct 391 TGTTGTTAATGTGGCAGCCACAACTAATTTTGACGAGAGATATGATGTTGGTCTTGGAAT 450
Query 466 CAACACATTTGGACCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTT 525
|||||||||||| | ||||||||||| ||||||||||| || |||||||||| || ||
Sbjct 451 TAACACATTTGGAGCTCTCAATGTCCTTAACTTTGCCAAAAAATGTGTTAAAGCTCAATT 510
Query 526 GCTTCTTCATGTTTCAACCGCGTATGTGCGCGGAGAGAAGTCTGGACTTTTACATGAGAA 585
|||||| ||||||||||| || ||||| | ||||||||| | || || ||| ||| ||
Sbjct 511 GCTTCTCCATGTTTCAACTGCTTATGTTTGTGGAGAGAAGCCAGGTCTCCTACCTGA-AA 569
Query 586 AA-CATTTCACATGGGGGAGACATT-G-AACG-G-A-CATAGAAAATTAGTCAT-TGAGA 638
|| ||||| ||| || ||| ||| | |||| | | || |||| | || | | |
Sbjct 570 AACCATTTGTCAT--GGAAGAGATTCGTAACGAGAATGATTTTCAATT-G-GATAT-ACA 624
Query 639 CC--GAAATGGAGCTAATGAAACAAAAACTGAAAGAGCTAC-A-GAAACAAAATTGTTCA 694
|| |||| |||||| ||||| |||| | ||||||| || | | | ||||| ||||||||
Sbjct 625 CCGTGAAAGGGAGCTGATGAAGCAAAGATTGAAAGAACT-CAATG-AACAAGATTGTTCA 682
Query 695 GAAGAAGAGATT--TCACAGTCTATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATG 752
|||||||| ||| || | | | |||||||| || || ||| |||||||||||||||||
Sbjct 683 GAAGAAGACATTACTCGC-G-CCATGAAAGAACTCGGCATGGAAAGGGCAAAGCTTCATG 740
Query 753 GATGGCCAAACACATATGTGTTT-ACCAAATCAATGGGAGAGATGCTTCTTGGTAATTAT 811
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||
Sbjct 741 GATGGCCAAACACATATGT-TTTCACCAAATCGATGGGAGAGATGCTTCTTGGTAACTAC 799
Query 812 AGAGAAAACCTTCC-CATCGTTATCATCCGTCCCACAATGATCACTAGCACTTTTTCAGA 870
| |||||| ||||| | |||| || ||||| ||||| ||||||||||||||| |||||||
Sbjct 800 AAAGAAAATCTTCCTC-TCGTCATTATCCGCCCCACGATGATCACTAGCACTCTTTCAGA 858
Query 871 ACCATTTCCCGGTTGGATCGAAGGGTTAAGAACCATAGACAGTGTGATTGTTGCATATGG 930
||||||||| |||||||||||||| |||||||| |||||||||||||| |||| || ||
Sbjct 859 ACCATTTCCTGGTTGGATCGAAGGATTAAGAACTGTAGACAGTGTGATTATTGCTTACGG 918
Query 931 CAAAGGAAG-GCTTAAATGTTTTCTTG-CAGATCCAAACTCAGTCCTTG--ATCTTATAC 986
||||| || ||| || |||||||||| | ||| |||||| || ||| || | ||||
Sbjct 919 -AAAGGGAGTGCTCAAGTGTTTTCTTGTC-GATGTAAACTCGGT--TTGCGATATGATAC 974
Query 987 CTGTGGACATGGTCGCAAACGCAATGGTCACGGCTGCGGCAATACACGCAGGGAAGCT-A 1045
| | ||| ||||| |||||||| ||| |||||||||| || | ||| || || | | | |
Sbjct 975 CAGCGGATATGGTGGCAAACGCGATGATCACGGCTGCAGCCACACATGCTGG-AGGTTCA 1033
Query 1046 --GGTTCCCA-GACCGTGTACCATGTCGGATCATCTTGTAAAAACCCGATCACAT 1097
||||| || | |||||||| || || |||||| | ||||||| || ||||
Sbjct 1034 AAGGTTCACATG---GTGTACCAAGTTGGTTCATCTCGCCAAAACCCAATAACAT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5