BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44550.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484867 jgi|Araly1|484867|fgenesh2_kg.5__859__AT3G44550.1 2383 0.0
Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1 1378 0.0
> Ahg484867 jgi|Araly1|484867|fgenesh2_kg.5__859__AT3G44550.1
Length=1596
Score = 2383 bits (1290), Expect = 0.0
Identities = 1479/1572 (94%), Gaps = 5/1572 (0%)
Strand=Plus/Plus
Query 35 GTCCAGACAATGGAACTCAATTGTGTTCAATTTCTTCGAAACAAGACGATTCTTGTCACC 94
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GTCAAGACAATGGAACTCAATTGTGTTCAATTTCTTCAAAACAAGACGATTCTTGTCACC 60
Query 95 GGAGCTACCGGTTTCCTTGCGAAGGTTTTTGTGGAGAAAATTCTGAGAGTGCAACCAAAT 154
|| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGCGCTACTGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAATTCTGAGAGTACAACCAAAT 120
Query 155 GTGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCCACTAAACGCTTA 214
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 GTGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCGACTAAACGGTTA 180
Query 215 CGCACAGAGGTATTTGAGAAAGAACTTTTTAAGGTATTGAGACAGAATCTTGGCGATGAG 274
| || ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 181 CACATGGAGGTATTTGAGAAAGATCTTTTTAAGGTGTTGAGAGAGAATCTTGGCGATGAG 240
Query 275 AAATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCGGGTGATATAGCGACTGAT 334
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 AAATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCAGGTGATATAGCGACTGAT 300
Query 335 CAATTAGGCATAAATGACTCTCATCTTAGAGAACGTATGCAAAAAGAAATAGATATTGTT 394
|| |||||||| ||||||||| |||||| ||||||||||| ||||||||| |||||||||
Sbjct 301 CAGTTAGGCATTAATGACTCTGATCTTAAAGAACGTATGCGAAAAGAAATCGATATTGTT 360
Query 395 GTCAATGTTGCAGCCACAACAAACTTTGACGAAAGATATGATGTTGGGCTTGGGATCAAT 454
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCAATGTTGCAGCTACAACAAACTTTGACGAAAGATATGATGTTGGGCTTGGGATCAAC 420
Query 455 ACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAATTGCTT 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 421 ACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAACTGGTT 480
Query 515 CTCCATGTCTCAACTGCTTATGTTTGTGGAGAAAAGCCAGGTCTCATACCTGAAAAACCA 574
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CTCCATGTCTCAACTGCTTATGTTTGCGGAGAAAAGCCAGGTCTCATACCTGAAAAACCA 540
Query 575 TTCATCATGGAAGAGATTCGTAACGAGAATGGTCTTCAATTGGATATTAACCTTGAAAGG 634
|||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 541 TTCATCATGGAAGATATTCGTAACGATAATGGTCTTCAATTGGATATAAATCTTGAAAGG 600
Query 635 GAGCTTATGAAGCAAAGATTGAAAGAACTCAATGAACAAGATTGTTCCGAAGAAGACATT 694
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GAGCTTATGAAGCAAAGACTGAAAGAACTTAATGAACAAGATTGTTCCGAAGAAGACATT 660
Query 695 ACTCTTTCCATGAAAGAACTCGGAATGGAAAGGGCCAAGCTTCATGGATGGCCTAACACA 754
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 661 ACTCTCTCCATGAAAGAACTCGGAATGGAAAGGGCAAAGCGTCATGGATGGCCAAACACA 720
Query 755 TATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAAGCATAAAGAAAATCTCCCC 814
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 721 TATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAACCACAAAGAAAATCTTCCC 780
Query 815 CTCGTCATCATCCGTCCCACGATGATCACTAGTACTCTTTCGGAACCTTTTCCTGGTTGG 874
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CTCGTTATCATCCGTCCCACGATGATCACTAGCACTCTTTCGGAACCTTTTCCTGGTTGG 840
Query 875 ATCGAAGGCTTGAGAACTGTCGACAGCGTGATTATTGCATATGGAAAGGGAGTGCTCAAG 934
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 ATCGAAGGCTTAAAAACTGTCGACAGCGTGATTATTGCATACGGAAAGGGAGTGCTCAAG 900
Query 935 TGTTTTCTTGTCGATGTTAACTCGGTCTGCGATATGATACCAGTGGATATGGTGGCAAAC 994
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 TGTTTTCTTGTCGATGTAAACTCGGTCTGCGATATGATACCAGTGGATATGGTAGCAAAC 960
Query 995 GCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTACCAT 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTATCAT 1020
Query 1055 GTCGGCTCATCTCACCAGAACCCAGTCACATTTGGAGAGATTCATGAGATTGCGGTTCGT 1114
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1021 GTCGGCTCCTCTCATCAGAACCCAGTGACATTTGGAGAGATTCATGAGATTGCGGCTCGT 1080
Query 1115 TACTTTACGAAAAACCCTTTGCGAAGTCGCAATGGCTCACTCATAACCGTCTCAAAAGTG 1174
||||| | |||||||||||||| |||||||||||||| |||||||||||||| ||| ||
Sbjct 1081 TACTTCATAAAAAACCCTTTGCGCAGTCGCAATGGCTCGCTCATAACCGTCTCGAAACTG 1140
Query 1175 AGGTTCATACCAACCATGGCTTTGTTCAGCCTCTACATGACCCTACGTTACAAACTACCT 1234
||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1141 AGGTTCATATCAACCATGGCTTTGTTCAGTCTCTACATGACCTTACGTTACAAACTACCT 1200
Query 1235 CTCCAGTTATTAAAACTAG-TTGACATAATATATCCTTGGAGAAACGGAGATAAATATGG 1293
|||||||| |||||| | | |||| |||||||||||||||||||||||||| ||||||||
Sbjct 1201 CTCCAGTTGTTAAAA-TTGATTGATATAATATATCCTTGGAGAAACGGAGACAAATATGG 1259
Query 1294 AGACAAGAACCGCAAAATCGAGTTGGTGATGAGATTGGTAGAGCTTTATGAGCCTTATGT 1353
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1260 AGACAAGAACCGCAAAATTGAGGTGGTGATGAGATTGGTAGAGCTTTATGAGCCGTATGT 1319
Query 1354 ACTCTTCAAGGGAATATTCGACGATAGAAATACAAAGAGTTTATGCGCAAACCAGAAGGA 1413
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACTTTTCAAGGGAATATTCGACGATAGAAATACAAAGAGTTTATGCGCAAACCAGAAGGA 1379
Query 1414 AGAGGAGATCAAAAATACAGAAAAATTGATGTTTGATTTCGACCCAAAAGGAATTAATTG 1473
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1380 AGAGGAGAGCAAAAATACAGAAAAAATGATGTTTGATTTCGACCCAAAAGGCATTAATTG 1439
Query 1474 GGGAGATTATCTCACAAATATACACATTTCTGGACTCGTCACACACGTGCTTAAGAAGTG 1533
||| |||||||||||||||||||| ||||||| ||| |||| ||||| ||||| ||||
Sbjct 1440 GGGGGATTATCTCACAAATATACATTTTTCTGGTCTCATCACCCACGTACTTAAAAAGTA 1499
Query 1534 AAATTTTATTTATTTCTGCATGTATCTGC-AATAAAACAGATCATGATGGAAAA-TATTG 1591
|||||||||| | ||| ||||||||| | |||||||||| ||||||| ||||| ||||
Sbjct 1500 AAATTTTATTAAATTCCGCATGTATCA-CTAATAAAACAGCTCATGATAGAAAAGTATTA 1558
Query 1592 TTTGTTTGTACG 1603
||||||||||||
Sbjct 1559 TTTGTTTGTACG 1570
> Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1
Length=1501
Score = 1378 bits (746), Expect = 0.0
Identities = 966/1074 (90%), Gaps = 8/1074 (1%)
Strand=Plus/Plus
Query 26 TAGACCAAAGTCCAGACAATGGAACTCAATTGTGTTCAATTTCTTCGAAACAAGACGATT 85
|||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 26 TAGACCAAAGTCCAAACAATGGAATTCAATTGTGTTCATTTTCTTCAAAACAAGACGATT 85
Query 86 CTTGTCACCGGAGCTACCGGTTTCCTTGCGAAGGTTTTTGTGGAGAAAATTCTGAGAGTG 145
|||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 86 CTTGTCACAGGAGCAACCGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAATTTTGAGAGTA 145
Query 146 CAACCAAATGTGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCCACT 205
|||||||||||||| ||||||||||| ||||||||||||| |||| ||| || || ||
Sbjct 146 CAACCAAATGTGAATAAGCTGTACCTCGTGGTGAGAGCATCCGACACTGACGCCGCGACG 205
Query 206 AAACGCTTACGCACAGAGGTATTTGAGAAAGAACTTTTTAAGGTATTGAGACAGAATCTT 265
||||||||||||||||||| || |||||||| ||||||||||| || || ||| ||||
Sbjct 206 AAACGCTTACGCACAGAGGCCTTCGAGAAAGATCTTTTTAAGGTGTTAAGGGAGAGTCTT 265
Query 266 GGCGATGAGAAA-TTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCGGGTGATAT 324
|||||||| ||| || ||||||||||||| |||||||||||| ||||| | ||||||||
Sbjct 266 GGCGATGA-AAATTTCAATACATTGTTGTCCGAAAAAGTTGTCCCGGTCGCAGGTGATAT 324
Query 325 AGCGACT-GATCAATTAGGCATAAATGACTCTCATCTTAGAGAACGTATGCAAAAAGAAA 383
|||| | ||||| |||||||| || |||||| | || ||||||||||||||||||||||
Sbjct 325 TGCGA-TGGATCATTTAGGCATGAAGGACTCTAAACTCAGAGAACGTATGCAAAAAGAAA 383
Query 384 TAGATATTGTTGTCAATGTTGCAGCCACAACAAACTTTGACGAAAGATATGATGTTGGGC 443
| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||| |
Sbjct 384 TCGATATTGTTGTTAATGTGGCAGCCACAACTAATTTTGACGAGAGATATGATGTTGGTC 443
Query 444 TTGGGATCAATACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAG 503
|||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 444 TTGGAATTAACACATTTGGAGCTCTCAATGTCCTTAACTTTGCCAAAAAATGTGTTAAAG 503
Query 504 TTCAATTGCTTCTCCATGTCTCAACTGCTTATGTTTGTGGAGAAAAGCCAGGTCTCATAC 563
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||
Sbjct 504 CTCAATTGCTTCTCCATGTTTCAACTGCTTATGTTTGTGGAGAGAAGCCAGGTCTCCTAC 563
Query 564 CTGAAAAACCATTCATCATGGAAGAGATTCGTAACGAGAATGGTCTTCAATTGGATATTA 623
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 564 CTGAAAAACCATTTGTCATGGAAGAGATTCGTAACGAGAATGATTTTCAATTGGATA-TA 622
Query 624 -ACCTTGAAAGGGAGCTTATGAAGCAAAGATTGAAAGAACTCAATGAACAAGATTGTTCC 682
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 623 CACCGTGAAAGGGAGCTGATGAAGCAAAGATTGAAAGAACTCAATGAACAAGATTGTTCA 682
Query 683 GAAGAAGACATTACTCTTTCCATGAAAGAACTCGGAATGGAAAGGGCCAAGCTTCATGGA 742
|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 683 GAAGAAGACATTACTCGCGCCATGAAAGAACTCGGCATGGAAAGGGCAAAGCTTCATGGA 742
Query 743 TGGCCTAACACATATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAAGC-ATAA 801
||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | | ||
Sbjct 743 TGGCCAAACACATATGTTTTCACCAAATCGATGGGAGAGATGCTTCTTGGTAA-CTACAA 801
Query 802 AGAAAATCTCCCCCTCGTCATCATCCGTCCCACGATGATCACTAGTACTCTTTCGGAACC 861
||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 802 AGAAAATCTTCCTCTCGTCATTATCCGCCCCACGATGATCACTAGCACTCTTTCAGAACC 861
Query 862 TTTTCCTGGTTGGATCGAAGGCTTGAGAACTGTCGACAGCGTGATTATTGCATATGGAAA 921
|||||||||||||||||||| || |||||||| ||||| ||||||||||| || |||||
Sbjct 862 ATTTCCTGGTTGGATCGAAGGATTAAGAACTGTAGACAGTGTGATTATTGCTTACGGAAA 921
Query 922 GGGAGTGCTCAAGTGTTTTCTTGTCGATGTTAACTCGGTCTGCGATATGATACCAGTGGA 981
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 922 GGGAGTGCTCAAGTGTTTTCTTGTCGATGTAAACTCGGTTTGCGATATGATACCAGCGGA 981
Query 982 TATGGTGGCAAACGCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCA 1041
||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct 982 TATGGTGGCAAACGCGATGATCACGGCTGCAGCCACACATGCTGGAGGTTCAAAGGTTCA 1041
Query 1042 CATGGTGTACCATGTCGGCTCATCTCACCAGAACCCAGTCACATTTGGAGAGAT 1095
|||||||||||| || || ||||||| ||| |||||| | |||| |||||||||
Sbjct 1042 CATGGTGTACCAAGTTGGTTCATCTCGCCAAAACCCAATAACATATGGAGAGAT 1095
Score = 399 bits (216), Expect = 2e-110
Identities = 335/392 (85%), Gaps = 10/392 (3%)
Strand=Plus/Plus
Query 1141 TCGCAATGGCTCACTCATAACCGTCTCAAAAGTGAGGTTCATACCAACCATGGCTTTGTT 1200
||||||| |||| || ||||||||||||||| ||| | | |||||||| |||||||||||
Sbjct 1108 TCGCAATAGCTCGCTGATAACCGTCTCAAAAATGAAGCTGATACCAACTATGGCTTTGTT 1167
Query 1201 CAGCCTCTACATGACCCTACGTTACAAACTACCTCTCCAGTTATTAAAACTAGTTGACAT 1260
||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1168 CAGCCTCTATATGACCATACGTTACAAACTACCTCTCCAGTTATTAAAATTGGTTGATAT 1227
Query 1261 AATATATCCTTGGAG-AAACGGAGATAAATATGGAGACAAGAACCGCAAAATCGAGT-TG 1318
||||||||||| ||| ||| ||||| || || | |||||||||||||||||| || ||
Sbjct 1228 AATATATCCTTCGAGGAAA-GGAGACAATTACAAAAACAAGAACCGCAAAATCG-GTATG 1285
Query 1319 GTGATGAGATTGGTAGAGCTTTATGAGCCTTATGTACTCTTCAAGGGAATATTCGACGAT 1378
||||||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1286 GTGATGAGATTGGTAAACCTTTACGAGCCTTACGTACTCTTCAAGGGCATATTCGACGAT 1345
Query 1379 AGAAATAC-AAAGAGTTTATGCGCAAACCAGAA-GGAAGAGGAGATCAAAAATACAGAAA 1436
|| ||||| ||| | || |||||| |||||||| ||| ||||| | | ||||| ||||||
Sbjct 1346 AGGAATACTAAAAACTT-ATGCGCCAACCAGAAAGGA-GAGGACAACCAAAATTCAGAAA 1403
Query 1437 AATTGATGTTTGATTTCGACCC-AAAAGGAATTAATTGGGGAGATTATCTCACAAATATA 1495
| |||| ||||||||||||||| |||| | |||| ||| |||||||||| | |||| ||
Sbjct 1404 ATTTGAAGTTTGATTTCGACCCTAAAATCA-TTAAATGGAGAGATTATCTTATAAATGTA 1462
Query 1496 CACATTTCTGGACTCGTCACACACGTGCTTAA 1527
|||||| |||| ||| ||| |||||||||||
Sbjct 1463 CACATTCCTGGCCTCATCATTCACGTGCTTAA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5