BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44560.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1 1705 0.0
Ahg484867 jgi|Araly1|484867|fgenesh2_kg.5__859__AT3G44550.1 1685 0.0
Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1 512 3e-144
> Ahg484868 jgi|Araly1|484868|fgenesh2_kg.5__860__AT3G44560.1
Length=1501
Score = 1705 bits (923), Expect = 0.0
Identities = 1047/1108 (94%), Gaps = 4/1108 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaTCATTTCCTCAGAGT--TAGACCAAAGTCCAAACAATGGAATTCAGTTGTGT 58
||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 AAAGAAAATCATTTCCTCAGAGTCATAGACCAAAGTCCAAACAATGGAATTCAATTGTGT 60
Query 59 TCATTTTCTTCAAAACAAGACGATTCTTGTCACAGGCGCAACCGGTTTCCTTGCCAAAGT 118
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 61 TCATTTTCTTCAAAACAAGACGATTCTTGTCACAGGAGCAACCGGTTTCCTTGCCAAGGT 120
Query 119 TTTTGTGGAGAAAATATTGAGAGTGCAACCAAATGTGAATAAGCTGTACCTCGTGGTGAG 178
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTGTGGAGAAAATTTTGAGAGTACAACCAAATGTGAATAAGCTGTACCTCGTGGTGAG 180
Query 179 AGCATCCGACAATGAAGCCGCGACGAAACGCTTACGCACAGAGGCATTCGAGAAAGATCT 238
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AGCATCCGACACTGACGCCGCGACGAAACGCTTACGCACAGAGGCCTTCGAGAAAGATCT 240
Query 239 TTTCAAGGTGTTAAGAGATAATCTTGGCGATGAGAAA-TTGAATACATTGTTGTCCGAAA 297
||| ||||||||||| || | |||||||||||| ||| || |||||||||||||||||||
Sbjct 241 TTTTAAGGTGTTAAGGGAGAGTCTTGGCGATGA-AAATTTCAATACATTGTTGTCCGAAA 299
Query 298 AAGTTGTCCCGGTCGCAGGTGATATCGCGATGGATCATTTAGGCATGAAGGACTCTAATC 357
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 300 AAGTTGTCCCGGTCGCAGGTGATATTGCGATGGATCATTTAGGCATGAAGGACTCTAAAC 359
Query 358 TAAGAGAACGTATGCAAAAAGAAATCGATATTGTTGTCAATGTCGCAGCTACAACTAATT 417
| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 360 TCAGAGAACGTATGCAAAAAGAAATCGATATTGTTGTTAATGTGGCAGCCACAACTAATT 419
Query 418 TCGACGAGAGATATGATATTGGTCTTGGAATAAACACATTTGGAGCTCTCAATGTCCTTA 477
| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TTGACGAGAGATATGATGTTGGTCTTGGAATTAACACATTTGGAGCTCTCAATGTCCTTA 479
Query 478 ACTTCGCCAAAAAATGTGTTAAAGCTCAATTGCTTCTCCATGTTTCAACTGCTTATGTTT 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTTTGCCAAAAAATGTGTTAAAGCTCAATTGCTTCTCCATGTTTCAACTGCTTATGTTT 539
Query 538 GCGGAGAAAAACCAGGTCTCCTACCTGAAAAACCGTTCGTCATGGAAGAGATTTGTAATG 597
| ||||| || ||||||||||||||||||||||| || ||||||||||||||| |||| |
Sbjct 540 GTGGAGAGAAGCCAGGTCTCCTACCTGAAAAACCATTTGTCATGGAAGAGATTCGTAACG 599
Query 598 AGAATGGTCTTCAATTGGATATAAACCTTGAAAGGGAGCTGATGAAACAAAGATTGAAAG 657
|||||| | |||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 600 AGAATGATTTTCAATTGGATATACACCGTGAAAGGGAGCTGATGAAGCAAAGATTGAAAG 659
Query 658 AACTCAATGAACAAGGTTGTTCAGAAGAAGGCACTACTTTCTACATGAAAGAACTCGGCA 717
||||||||||||||| |||||||||||||| || |||| | |||||||||||||||||
Sbjct 660 AACTCAATGAACAAGATTGTTCAGAAGAAGACATTACTCGCGCCATGAAAGAACTCGGCA 719
Query 718 TGGAAAGGGCAAAGCTTCATGGATGGCCAAACACATATGTTTTCACCAAATCGATGGGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGAAAGGGCAAAGCTTCATGGATGGCCAAACACATATGTTTTCACCAAATCGATGGGAG 779
Query 778 AGATGCTTCTTGGTAACCATAAAGAAAATCTTCCTCTCGTCATTATCCGTCCCACGATGA 837
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 AGATGCTTCTTGGTAACTACAAAGAAAATCTTCCTCTCGTCATTATCCGCCCCACGATGA 839
Query 838 TCACTAGCACTCTTTTTGAACCATTTCCTGGTTGGATTGAAGGACTAAGAACTGTAGACA 897
||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 840 TCACTAGCACTCTTTCAGAACCATTTCCTGGTTGGATCGAAGGATTAAGAACTGTAGACA 899
Query 898 GTGTAATTATTGCGTACGGAAAGGGAGTGCTCAAGTGTTTTCTTGTCGATGTAAACTCGG 957
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGTGATTATTGCTTACGGAAAGGGAGTGCTCAAGTGTTTTCTTGTCGATGTAAACTCGG 959
Query 958 TTTGCGATATGATACCAGCGGATATGGTGGCAAACGCGATGATCGCAGCTGCAGCCACAC 1017
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 960 TTTGCGATATGATACCAGCGGATATGGTGGCAAACGCGATGATCACGGCTGCAGCCACAC 1019
Query 1018 ATGCTGGAGGTTCAAAGGTTCACATGGTGTACCAAGTTGGTTCATCTCACCAAAACCCAA 1077
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 ATGCTGGAGGTTCAAAGGTTCACATGGTGTACCAAGTTGGTTCATCTCGCCAAAACCCAA 1079
Query 1078 TAATATATGGAGAGATCCGTGAAATTTT 1105
||| ||||||||||||||| ||||||||
Sbjct 1080 TAACATATGGAGAGATCCGCGAAATTTT 1107
Score = 590 bits (319), Expect = 1e-167
Identities = 371/396 (94%), Gaps = 4/396 (1%)
Strand=Plus/Plus
Query 1139 TCGCAATGGCTCAATGATAACTGTCTCGAAAATGAAGCTGATACCAACTCTGGCTTTGTT 1198
||||||| |||| ||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 1108 TCGCAATAGCTCGCTGATAACCGTCTCAAAAATGAAGCTGATACCAACTATGGCTTTGTT 1167
Query 1199 CAGCCTCTACATGACCATACGTTACAAACTACCTGTCCAGTTATTAAAATTGGTTGATAT 1258
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1168 CAGCCTCTATATGACCATACGTTACAAACTACCTCTCCAGTTATTAAAATTGGTTGATAT 1227
Query 1259 AATATATCCTTCGAGGGAAGGAGACGAA-TACAAAAACAAAAACCGCAAGATCGATATGG 1317
|||||||||||||||| |||||||| || ||||||||||| |||||||| |||| |||||
Sbjct 1228 AATATATCCTTCGAGGAAAGGAGAC-AATTACAAAAACAAGAACCGCAAAATCGGTATGG 1286
Query 1318 TGATGAGATTGGTAAAGCTTTACGAGCCTTACGTACTCTTCAAGGGCATATTCGACGATA 1377
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 TGATGAGATTGGTAAACCTTTACGAGCCTTACGTACTCTTCAAGGGCATATTCGACGATA 1346
Query 1378 GGAATACTAAAAACTTATGCGCCAAGCAGAAAGAAGAGGACAAC-AGAAATTCAGAAAAT 1436
||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||||||
Sbjct 1347 GGAATACTAAAAACTTATGCGCCAACCAGAAAGGAGAGGACAACCA-AAATTCAGAAAAT 1405
Query 1437 TTTATGTTTGATTTCGACCCTAAAATCATTAAATGGAAAGATTATCTTATAAATGTACAC 1496
|| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1406 TTGAAGTTTGATTTCGACCCTAAAATCATTAAATGGAGAGATTATCTTATAAATGTACAC 1465
Query 1497 ATTCCTGGCCTCATCACTCACGTGCTTAAGAAGTAA 1532
|||||||||||||||| |||||||||||| || |||
Sbjct 1466 ATTCCTGGCCTCATCATTCACGTGCTTAAAAAATAA 1501
> Ahg484867 jgi|Araly1|484867|fgenesh2_kg.5__859__AT3G44550.1
Length=1596
Score = 1685 bits (912), Expect = 0.0
Identities = 1312/1507 (87%), Gaps = 19/1507 (1%)
Strand=Plus/Plus
Query 36 CAA-ACAATGGAATTCAGTTGTGTTCATTTTCTTCAAAACAAGACGATTCTTGTCACAGG 94
||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 3 CAAGACAATGGAACTCAATTGTGTTCAATTTCTTCAAAACAAGACGATTCTTGTCACCGG 62
Query 95 CGCAACCGGTTTCCTTGCCAAAGTTTTTGTGGAGAAAATAT-TGAGAGTGCAACCAAATG 153
||| || |||||||||||||| ||||||||||||||||| | ||||||| ||||||||||
Sbjct 63 CGCTACTGGTTTCCTTGCCAAGGTTTTTGTGGAGAAAAT-TCTGAGAGTACAACCAAATG 121
Query 154 TGAATAAGCTGTACCTCGTGGTGAGAGCATCCGACAATGAAGCCGCGACGAAACGCTTAC 213
|||| ||||||||||| ||||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 122 TGAAGAAGCTGTACCTTTTGGTGAGAGCATCTGACAATGAAGCTGCGACTAAACGGTTAC 181
Query 214 GCACAGAGGCATTCGAGAAAGATCTTTTCAAGGTGTTAAGAGATAATCTTGGCGATGAGA 273
|| |||| ||| |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 182 ACATGGAGGTATTTGAGAAAGATCTTTTTAAGGTGTTGAGAGAGAATCTTGGCGATGAGA 241
Query 274 AATTGAATACATTGTTGTCCGAAAAAGTTGTCCCGGTCGCAGGTGATATCGCGA-TGGAT 332
|||| ||||||||||||| |||||||||||| ||||| |||||||||| |||| | |||
Sbjct 242 AATTAAATACATTGTTGTACGAAAAAGTTGTTTCGGTCCCAGGTGATATAGCGACT-GAT 300
Query 333 CATTTAGGCATGAAGGACTCTAATC-TAAGAGAACGTATGCAAAAAGAAATCGATATTGT 391
|| |||||||| || |||||| ||| ||| ||||||||||| ||||||||||||||||||
Sbjct 301 CAGTTAGGCATTAATGACTCTGATCTTAA-AGAACGTATGCGAAAAGAAATCGATATTGT 359
Query 392 TGTCAATGTCGCAGCTACAACTAA-TTTCGACGAGAGATATGATATTGGTCTTGGAATAA 450
||||||||| ||||||||||| || ||| ||||| ||||||||| |||| ||||| || |
Sbjct 360 TGTCAATGTTGCAGCTACAACAAACTTT-GACGAAAGATATGATGTTGGGCTTGGGATCA 418
Query 451 ACACATTTGGAGCTCTCAATGTCCTTAACTTCGCCAAAAAATGTGTTAAAGCTCAATTGC 510
||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||
Sbjct 419 ACACATTTGGAGCTCTCAACGTCCTTAACTTTGCCAAAAAATGTGTTAAAGTTCAACTGG 478
Query 511 TTCTCCATGTTTCAACTGCTTATGTTTGCGGAGAAAAACCAGGTCTCCTACCTGAAAAAC 570
|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 479 TTCTCCATGTCTCAACTGCTTATGTTTGCGGAGAAAAGCCAGGTCTCATACCTGAAAAAC 538
Query 571 CGTTCGTCATGGAAGAGATTTGTAATGAGAATGGTCTTCAATTGGATATAAACCTTGAAA 630
| ||| |||||||||| ||| |||| || ||||||||||||||||||||||| |||||||
Sbjct 539 CATTCATCATGGAAGATATTCGTAACGATAATGGTCTTCAATTGGATATAAATCTTGAAA 598
Query 631 GGGAGCTGATGAAACAAAGATTGAAAGAACTCAATGAACAAGGTTGTTCAGAAGAAGGCA 690
||||||| ||||| |||||| |||||||||| |||||||||| |||||| ||||||| ||
Sbjct 599 GGGAGCTTATGAAGCAAAGACTGAAAGAACTTAATGAACAAGATTGTTCCGAAGAAGACA 658
Query 691 CTACTTTCTACATGAAAGAACTCGGCATGGAAAGGGCAAAGCTTCATGGATGGCCAAACA 750
|||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 659 TTACTCTCTCCATGAAAGAACTCGGAATGGAAAGGGCAAAGCGTCATGGATGGCCAAACA 718
Query 751 CATATGTTTTCACCAAATCGATGGGAGAGATGCTTCTTGGTAACCATAAAGAAAATCTTC 810
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 719 CATATGTTTTCACCAAATCAATGGGAGAAATGCTTCTTGGTAACCACAAAGAAAATCTTC 778
Query 811 CTCTCGTCATTATCCGTCCCACGATGATCACTAGCACTCTTTTTGAACCATTTCCTGGTT 870
| ||||| || ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 779 CCCTCGTTATCATCCGTCCCACGATGATCACTAGCACTCTTTCGGAACCTTTTCCTGGTT 838
Query 871 GGATTGAAGGAC-TAAGAACTGTAGACAGTGTAATTATTGCGTACGGAAAGGGAGTGCTC 929
|||| ||||| | ||| |||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 839 GGATCGAAGG-CTTAAAAACTGTCGACAGCGTGATTATTGCATACGGAAAGGGAGTGCTC 897
Query 930 AAGTGTTTTCTTGTCGATGTAAACTCGGTTTGCGATATGATACCAGCGGATATGGTGGCA 989
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 898 AAGTGTTTTCTTGTCGATGTAAACTCGGTCTGCGATATGATACCAGTGGATATGGTAGCA 957
Query 990 AACGCGATGATCGCAGCTGCAGCCACACATGCTGGAGGTTCAAAGGTTCACATGGTGTAC 1049
||||| |||||| | |||||||||| ||| |||||||||||| |||||||||||||||
Sbjct 958 AACGCAATGATCACGGCTGCAGCCAAACACGCTGGAGGTTCAGGGGTTCACATGGTGTAT 1017
Query 1050 CAAGTTGGTTCATCTCACCAAAACCCAATAATATATGGAGAGATCCGTGAAATTTTGTTT 1109
|| || || || ||||| || |||||| | | || ||||||||| | ||| ||| | |
Sbjct 1018 CATGTCGGCTCCTCTCATCAGAACCCAGTGACATTTGGAGAGATTCATGAGATTGCGGCT 1077
Query 1110 TGTTACTTCACCAAAAACTCGTTGCGCAGTCGCAATGGCTCAATGATAACTGTCTCGAAA 1169
||||||||| |||||| | |||||||||||||||||||| | ||||| |||||||||
Sbjct 1078 CGTTACTTCATAAAAAACCCTTTGCGCAGTCGCAATGGCTCGCTCATAACCGTCTCGAAA 1137
Query 1170 ATGAAGCTGATACCAACTC-TGGCTTTGTTCAGCCTCTACATGACCATACGTTACAAACT 1228
||| | | ||| |||| | ||||||||||||| |||||||||||| |||||||||||||
Sbjct 1138 CTGAGGTTCATATCAAC-CATGGCTTTGTTCAGTCTCTACATGACCTTACGTTACAAACT 1196
Query 1229 ACCTGTCCAGTTATTAAAATTGGTTGATATAATATATCCTTCGAGGGAA-GGAGACGAAT 1287
|||| ||||||| ||||||||| |||||||||||||||||| ||| || |||||| |||
Sbjct 1197 ACCTCTCCAGTTGTTAAAATTGATTGATATAATATATCCTTGGAGA-AACGGAGACAAAT 1255
Query 1288 ACAAAAACAAAAACCGCAAGATCGATATGGTGATGAGATTGGTAAAGCTTTACGAGCCTT 1347
| | |||| |||||||| || || ||||||||||||||||| ||||||| ||||| |
Sbjct 1256 ATGGAGACAAGAACCGCAAAATTGAGGTGGTGATGAGATTGGTAGAGCTTTATGAGCCGT 1315
Query 1348 ACGTACTCTTCAAGGGCATATTCGACGATAGGAATACTAAAAACTT-ATGCGCCAAGCAG 1406
| ||||| |||||||| |||||||||||||| ||||| ||| | || |||||| || |||
Sbjct 1316 ATGTACTTTTCAAGGGAATATTCGACGATAGAAATAC-AAAGAGTTTATGCGCAAACCAG 1374
Query 1407 AAAGAAGAGGACAACAGAAATTCAGAAAATTTTATGTTTGATTTCGACCCTAAAAT-CAT 1465
|| |||||||| | || |||| ||||||| | ||||||||||||||||| |||| |||
Sbjct 1375 AAGGAAGAGGAGAGCAAAAATACAGAAAAAATGATGTTTGATTTCGACCC-AAAAGGCAT 1433
Query 1466 TAAATGGAAAGATTATCTTATAAATGTACACATTCCTGGCCTCATCACTCACGTGCTTAA 1525
||| ||| |||||||| | |||| |||| || |||| |||||||| ||||| |||||
Sbjct 1434 TAATTGGGGGGATTATCTCACAAATATACATTTTTCTGGTCTCATCACCCACGTACTTAA 1493
Query 1526 GAAGTAA 1532
||||||
Sbjct 1494 AAAGTAA 1500
> Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1
Length=1490
Score = 512 bits (277), Expect = 3e-144
Identities = 1037/1392 (74%), Gaps = 99/1392 (7%)
Strand=Plus/Plus
Query 42 ATGGAATTCAGTTGTGTTCATTTTCTTCAAAACAAGACGATTCTTGTCACAGGCGCAACC 101
||||| | || ||| |||| || || || |||||||||||||| ||||| || | ||
Sbjct 1 ATGGAGTCCAATTGCATTCAGTTCCTCCAGAACAAGACGATTCTCGTCACCGGTGTTCCC 60
Query 102 GGTTTCCTTGCCAAAGTTTTTGTGGAGAAAATATTGA-GAGTGCAACCAAATGTGAATAA 160
|||||||| |||||||| ||||||||||||||||||| || | |||||||| ||||| ||
Sbjct 61 GGTTTCCTCGCCAAAGTGTTTGTGGAGAAAATATTGAGGA-TTCAACCAAACGTGAAGAA 119
Query 161 GCTGTACCTCGTGGTGAGAGCATCCGACAATGAAGCCGCGACGAAACGCTTACGCACAGA 220
||| | ||| | |||||||| | ||||||||| | || | | |||| || | || ||
Sbjct 120 GCTTTTCCTTTTCTTGAGAGCAGCAGACAATGAATCAGCCATGCAACGGTTTCACAGTGA 179
Query 221 GGCATTCGAGAAAGATCTTTTCAAG-GTGTTAAGAGATAATC-TT-GGCGATGAGAAAT- 276
|| || |||||||||||||| || ||||| || || | | || || |||||| |||
Sbjct 180 GGTTTTGGAGAAAGATCTTTT-TAGAGTGTTGAG-GA-ACGCTTTAGGTGATGAG-AATC 235
Query 277 T-GAATACATT-GTTGTCCGAAAAAGTTGTCCCGGTCGCAGGTGATATCGCGA-TGGATC 333
| ||| | || | | || |||||||| ||||| | || |||||||| | | | |||
Sbjct 236 TGGAA-GCTTTAG-TATCAGAAAAAGTCGTCCCTATTGCGGGTGATATTTC-AGTTGATA 292
Query 334 ATTTAGGCA-TGAAGGACTCTAATCTAAGAGAACGTATGCAAAAAGAAATCGATATTGTT 392
|| | || | ||||||| ||| |||| | ||| |||| || || |||||||| ||
Sbjct 293 ATCT-GGGAGTGAAGGATTCTGATCTCTTACAACATATGTGGAATGAGATCGATATCATT 351
Query 393 GTCAATGTCGCAGCTACAACTAA-TTTCGACGAGAGATATGATATTGGTCTTGGAATAAA 451
||||||||||| || |||||||| ||| || || ||||||||| | |||||| | || ||
Sbjct 352 GTCAATGTCGCCGCCACAACTAACTTT-GATGAAAGATATGATGTCGGTCTTAGCATCAA 410
Query 452 CACATTTGGAGCTCTCAATGTCCTTAACTTCGCCAAAAAATGTGTTAAAGCTCAATTGCT 511
||||||||| | ||||||||||| ||||| ||||| || |||||||||| || ||| |
Sbjct 411 TACATTTGGACCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTTGGT 470
Query 512 TCTCCATGTTTCAACTGCTTATGTTTGCGGAGAAAAACCAGGTCTCCTACCTGA-AAAAC 570
||||||||| ||||| || ||||| |||||||| || | || || ||| || |||||
Sbjct 471 TCTCCATGTCTCAACCGCGTATGTGTGCGGAGAGAAGTCTGGACTTTTACAAGAGAAAAC 530
Query 571 CGTTCGTCATGGAAGAGA-TTTGTAATGAGA-ATGGTCTTCAATT-G-GATAT-AAACCT 625
||| ||||| ||| | ||| || | || |||| |||| | || | | |||
Sbjct 531 ATTTC-ACATGGGAGAAACGTTG-AACG-GACATGG---AAAATTAGTCAT-TGAGACC- 582
Query 626 TGAAAG-GGAGCTGATGAAACAAAGATTGAAAGAACTCA-ATG-AACAAGGTTGTTCAGA 682
| | | |||||| |||||||||| | |||||||||| | | | |||||| |||||| ||
Sbjct 583 -G-AGGTGGAGCTAATGAAACAAAAACTGAAAGAACT-ACA-GAAACAAGATTGTTCGGA 638
Query 683 AGAAG-GCA-CT-ACTTTCTACATGAAAGAACTCGGCATGGAAAGGGCAAAGCTTCATGG 739
||||| | | | || ||| |||||||| || || ||| ||||||||||||||||||
Sbjct 639 AGAAGAG-ATTTCACAGTCT--ATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATGG 695
Query 740 ATGGCCAAACACATATGT-TTTCACCAAATCGATGGGAGAGATGCTTCTTGGTAACCATA 798
|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 696 ATGGCCAAACACATATGTCTTT-ACCAAATCAATGGGAGAGATGCTTCTTGGTAATCATA 754
Query 799 AAGAAAATCTTCCTCTCGTCATTATCCGTCCCACGATGATCACTAGCACTCTTTTTGAAC 858
||||||||||||| | || || ||||| ||||| ||||| ||||| |||||| ||||
Sbjct 755 GAGAAAATCTTCCTATTGTTATCATCCGCCCCACAATGATTACTAGTACTCTTGCCGAAC 814
Query 859 CATTTCCTGGTTGGATTGAAGGACTAAGAACTGTAGACAGTGTAATTATTGCGTACGG-A 917
||||||| |||||||| ||||| ||||||| |||| ||||| ||| |||| || || |
Sbjct 815 CATTTCCCGGTTGGATCGAAGGGTTAAGAACCATAGATAGTGTGATTGTTGCATATGGCA 874
Query 918 AAGGGAGTGCTCAAGTGTTTTCTTGTC-GATGTAAACTCGGT--TTGCGATATGATACCA 974
|||| || ||| || |||||||||| | ||| |||||| || ||| || | |||||
Sbjct 875 AAGGAAG-GCTTAAATGTTTTCTTG-CAGATCCAAACTCAGTCCTTG--ATCTTATACCT 930
Query 975 GCGGATATGGTGGCAAACGCGATGATCGCAGCTGCAGCCACACATGCTGG-AGGTTCAAA 1033
| ||||||||| |||||||| ||| || | |||| || | ||| || || | ||| |
Sbjct 931 GTGGATATGGTCGCAAACGCAATGGTCACGGCTGTGGCAATACACGCAGGGAAGTT-A-- 987
Query 1034 GG-T-TCACATGGTGTACCAAGTTGGTTCATCTCACCAA-AACCCAATAATATATGGAG- 1089
|| | ||| | |||||||| || || |||||| || ||||| |||| || | ||
Sbjct 988 GGCTCTCAGACCGTGTACCATGTCGGATCATCTTGT-AAGAACCCGATAACAT-TCGAAC 1045
Query 1090 AGATCCGTGAAATTTT-GTTTTGTTACTTCACCAAAAA-C-TC--GTTGCG-CAGTCGCA 1143
|||| | || | | | | |||||||||||||| | || |||| | | || | |
Sbjct 1046 AGATTCACGATCTCGCAGCTC-GCTACTTCACCAAAAATCCTCTTGTTG-GAC-GT-G-A 1100
Query 1144 ATGGCTCAATG-ATAACT-GTCTCGAAAATGAAG---CT-GATACCAACTCTGGCTTTGT 1197
||| ||| | || | | ||||||||| ||| || | | ||| || ||||| ||
Sbjct 1101 -TGGTTCA-TCCATCA-TAGTCTCGAAAG-GAACTATCTTG-T-CCA-CTATGGCTCAGT 1153
Query 1198 TCAGCCTCTACATGACCATACGTTACAAACTACCTGTCCAGTTATTAAAATTGGT-TGAT 1256
||||||||||||||||| | |||||||| ||||| | ||| || | |||| | | ||
Sbjct 1154 TCAGCCTCTACATGACCCTTCGTTACAAGTTACCTTTACAGATACTGCGATTGATAT-AT 1212
Query 1257 ATAATATATCCTTCGAGGGAAGGAGACGAATACAAAAACAAAAACCGCAAGATCGATA-T 1315
|||| ||||||| | |||| ||| | |||| ||| ||| ||||||| || | | |
Sbjct 1213 GTAATTTATCCTTGGTGGGATGGAAATAAATATAAAGACATTGACCGCAAAATTAA-ACT 1271
Query 1316 GGTGATGAGATTGGTAAAGCTTTAC-GAGCCTTACGTACTC-TTCAAGGGCATATTCGAC 1373
|| |||||| | || | || ||| || || || || || || |||||| |||| ||
Sbjct 1272 GGCGATGAGGCTAGTCGACCTCTACAGA-CCGTATGT-CTTGTTTAAGGGCCTATTTGAT 1329
Query 1374 GATAGGAATACT 1385
|||| |||||||
Sbjct 1330 GATACGAATACT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5