BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44590.2 Length=651 Score E Sequences producing significant alignments: (Bits) Value Ahg484870 jgi|Araly1|484870|fgenesh2_kg.5__862__AT3G44590.1 717 0.0 > Ahg484870 jgi|Araly1|484870|fgenesh2_kg.5__862__AT3G44590.1 Length=493 Score = 717 bits (388), Expect = 0.0 Identities = 463/498 (93%), Gaps = 10/498 (2%) Strand=Plus/Plus Query 1 AAAGCTTGTAGCTTCCTGCTCCTCAAATCTTCTTGCAGAAAAATGAAGGTTGCCGCTGCT 60 ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1 AAAGCTTGTAGCTTCTTGCTCCTCAAATCTTCTTG--G-AAAATGAAGGTTGCCGCTGCT 57 Query 61 TTCCTCCTCGCCGTTTTGGGCGGAAACGCTAATCCTTCTGCTGATAATATCAAAGATATC 120 || |||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 58 TTTCTCCTCGCTGTTTTGGGCGGAAACGCTAATCCTTGTGCTGAGAATATCAAAGATATC 117 Query 121 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAGAGCATTGAGCTTCTATTGAAAGAAGTG 180 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 118 ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAAAGCATTGAGCTTCTTTTGAAAGAAGTG 177 Query 181 AGTGGTAAAGACATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTAGCGTCTGTGCCA 240 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 178 AGTGGTAAGGATATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTGGCGTCTGTGCCA 237 Query 241 TCTGGTGGTGGTGTG-GCTGTTTCAGCTGCTCCATCAAGCGGTGGTGGTGGTGCTGCTGC 299 ||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||| |||| Sbjct 238 TCTGGTGGTGGTG-GCGCTGTTTCAGCTGTTCCGTCAAGTGGTGGTGGTGGTGCTCCTGC 296 Query 300 CCCTGCGGagaagaaagaagccaagaaggaagagaaagaagaGTCTGATGATGACATGGG 359 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 297 AGCTGCGGAGAAGAAAGAAGCTAAGAAGGAAGAGAAAGAAGAGTCCGATGATGACATGGG 356 Query 360 ATTCAGTCTCTTCGAGTAAGGTTTTTGTCCCCACGGAAAGGAGTCG-AGATTTGATTTTT 418 |||||||||||||||||||| |||| ||||| || |||| |||||| ||||||||||||| Sbjct 357 ATTCAGTCTCTTCGAGTAAGATTTTCGTCCC-ACCGAAATGAGTCGGAGATTTGATTTTT 415 Query 419 TGTTCTCTTAGTGGTTCTGGTTTTTGCTTCTTGGATTACGAATTTTACTCCTTAGATAAT 478 |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| Sbjct 416 TGTTCTCTTAGTGGATCTGGTTTTTGATTCTTGGATTACGAATTTTACTC---AGTTAAT 472 Query 479 GAAGCAAGAAGAGTTTTT 496 |||||||||||||||||| Sbjct 473 GAAGCAAGAAGAGTTTTT 490 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23864946042 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5