BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44590.2

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484870 jgi|Araly1|484870|fgenesh2_kg.5__862__AT3G44590.1          717    0.0  


> Ahg484870 jgi|Araly1|484870|fgenesh2_kg.5__862__AT3G44590.1
Length=493

 Score =  717 bits (388),  Expect = 0.0
 Identities = 463/498 (93%), Gaps = 10/498 (2%)
 Strand=Plus/Plus

Query  1    AAAGCTTGTAGCTTCCTGCTCCTCAAATCTTCTTGCAGAAAAATGAAGGTTGCCGCTGCT  60
            ||||||||||||||| |||||||||||||||||||  | |||||||||||||||||||||
Sbjct  1    AAAGCTTGTAGCTTCTTGCTCCTCAAATCTTCTTG--G-AAAATGAAGGTTGCCGCTGCT  57

Query  61   TTCCTCCTCGCCGTTTTGGGCGGAAACGCTAATCCTTCTGCTGATAATATCAAAGATATC  120
            || |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct  58   TTTCTCCTCGCTGTTTTGGGCGGAAACGCTAATCCTTGTGCTGAGAATATCAAAGATATC  117

Query  121  ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAGAGCATTGAGCTTCTATTGAAAGAAGTG  180
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  118  ATCGGAGCTGTTGGTGCTGATGTTGATGGAGAAAGCATTGAGCTTCTTTTGAAAGAAGTG  177

Query  181  AGTGGTAAAGACATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTAGCGTCTGTGCCA  240
            |||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  178  AGTGGTAAGGATATTGCTGAGCTGATTGCTTCTGGTAGGGAGAAGTTGGCGTCTGTGCCA  237

Query  241  TCTGGTGGTGGTGTG-GCTGTTTCAGCTGCTCCATCAAGCGGTGGTGGTGGTGCTGCTGC  299
            ||||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||| ||||
Sbjct  238  TCTGGTGGTGGTG-GCGCTGTTTCAGCTGTTCCGTCAAGTGGTGGTGGTGGTGCTCCTGC  296

Query  300  CCCTGCGGagaagaaagaagccaagaaggaagagaaagaagaGTCTGATGATGACATGGG  359
              ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  297  AGCTGCGGAGAAGAAAGAAGCTAAGAAGGAAGAGAAAGAAGAGTCCGATGATGACATGGG  356

Query  360  ATTCAGTCTCTTCGAGTAAGGTTTTTGTCCCCACGGAAAGGAGTCG-AGATTTGATTTTT  418
            |||||||||||||||||||| |||| ||||| || |||| |||||| |||||||||||||
Sbjct  357  ATTCAGTCTCTTCGAGTAAGATTTTCGTCCC-ACCGAAATGAGTCGGAGATTTGATTTTT  415

Query  419  TGTTCTCTTAGTGGTTCTGGTTTTTGCTTCTTGGATTACGAATTTTACTCCTTAGATAAT  478
            |||||||||||||| ||||||||||| |||||||||||||||||||||||   || ||||
Sbjct  416  TGTTCTCTTAGTGGATCTGGTTTTTGATTCTTGGATTACGAATTTTACTC---AGTTAAT  472

Query  479  GAAGCAAGAAGAGTTTTT  496
            ||||||||||||||||||
Sbjct  473  GAAGCAAGAAGAGTTTTT  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23864946042


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5