BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44610.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323150 jgi|Araly1|323150|fgenesh1_pm.C_scaffold_5000694 1581 0.0
> Ahg323150 jgi|Araly1|323150|fgenesh1_pm.C_scaffold_5000694
Length=1416
Score = 1581 bits (856), Expect = 0.0
Identities = 938/979 (96%), Gaps = 0/979 (0%)
Strand=Plus/Plus
Query 69 ATGGAGCCATGGATTGACGAATTAACCGACGACTTACAGAGTGTAAGCTTTACATCAGCC 128
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGCCATGGATTGACGAATTAGCCGACGATTTACAGAGTGTAAGCTTTACATCAGCC 60
Query 129 GGAACCACCGTGAATCGAAGCACAAGCTCCGGTTCTCGCTCTTCCTCCTCCGCCGCAGCT 188
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAACCACCGTGAATCGAAGCACTAGCTCCGGTTCTCGCTCTTCCTCCTCCGCCGCAGCT 120
Query 189 TTAACACCAGCACCATCAGCTCACGGTTCATTCTCATCTTCGAAActccctccttcactc 248
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 121 TTAACACCAGCACCATCAGCTCACGGTTCATTCTCATCCTCAAAACTTCCTCCTTCACTC 180
Query 249 cgatcatctctctcactctccgatctcagattccgtctccgtctcGGTTCCGGCGACATC 308
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGATCATCACTCTCACTTTCCGATCTCAGATTCCGTCTCCGTCTCGGTTCCGGCGACATC 240
Query 309 GGCTCTGTTTTCTTAGCCGAATTCAAATCCCTAACCGCCGTAACAGAAACCACCGCCGTT 368
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTCTGTTTTCTTAGCCGAATTCAAATCCCTAACCGCCGTAACAGAAACCACCGCCGTG 300
Query 369 AAATTACCTCTGTTAGCAGCGAAAGTTATGGATAAAAAGGAGCTCGCGAGCAGAAGCAAA 428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAATTACCTCTGTTAGCAGCGAAAGTTATGGATAAAAAGGAACTCGCGAGCAGAAGCAAA 360
Query 429 GAAGGTAGAGCTAAGACGGAGAGAGAGATTCTCGAATCTCTTGATCATCCGTTTCTTCCG 488
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GAAGGAAGAGCGAAGACGGAGAGAGAGATTTTCGAATCTCTTGATCATCCGTTTCTTCCG 420
Query 489 ACGCTTTACGCCGCCATTGATTCTCCGAAATGGCTCTGTTTATTAACGGAGTTTTGTCCC 548
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 ACGCTTTACGCCGCCATTGATTCGCCGAAATGGCTCTGTTTGTTAACGGAGTTTTGTCCC 480
Query 549 GGCGGTGACCTTCACGTTCTCCGTCAAAAACAGACTCATAAACGTTTCCATGAATCCGCC 608
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 481 GGCGGTGACCTTCATGTTCTCCGTCAAAAACAGAATTATAAACGTTTCCATGAATCCGCC 540
Query 609 GTCAGATTCTATGTATCGGAAGTGATCGTAGCGATTGAATATCTTCACATGTTGGGGATT 668
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GTCAGATTCTATGTATCTGAAGTGATCGTGGCGATTGAATATCTTCACATGTTGGGGATT 600
Query 669 GTGTACCGCGATTTGAAGCCTGAGAACGTGCTGGTTCGATCAGATGGTCACATCATGTTA 728
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 601 GTTTACCGCGATTTGAAGCCTGAGAACGTGCTGGTTCGATCAGATGGTCATATCATGCTA 660
Query 729 ACTGATTTTGATCTCTCCTTAAAATGTGATGAATCGACTTCCACACCACAGATAGTGCTG 788
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCGATTTTGATCTCTCTTTAAAATGTGATGAATCGACTTCCACACCACAGATAGTGCTG 720
Query 789 AACCGGAACAATCTTCCTAATGGCTCGTCTGACCAGAACGAGAACCAAGGCATGGACCAC 848
||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 721 AACCGAAACAACCTTCCTAACGGCTCATCTGACCAGAACGAAAACCAAGGCATGGACCAC 780
Query 849 CGTCAAACCACATCATCCTCTTGCATGATCCCTAACTGTATTGTCCCTGCTGTCTCTTGC 908
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATCAAACCACATCGTCCTCTTGCATGATCCCTAACTGTATTGTCCCTGCTGTCTCTTGC 840
Query 909 TTCCACCCGAGAATCCGAAGGCGTAAGAAGAAAACTGATCACCGTAACAACGGTCCTGAG 968
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 841 TTTCACCCGAGAATCCGAAGGCGCAAGAAGAAAACCGATCACCGTAACAACGGTCCTGAG 900
Query 969 CTTGTGGCTGAACCTGTAGATGTCCGGTCCATGTCATTCGTTGGGACGCATGAGTACTTG 1028
||||| || || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 CTTGTAGCCGAGCCTGTGGATGTCCGGTCCATGTCCTTCGTTGGGACGCATGAGTACTTG 960
Query 1029 GCTCCTGAGATTGTTTCAG 1047
|||||||||||||||||||
Sbjct 961 GCTCCTGAGATTGTTTCAG 979
Score = 614 bits (332), Expect = 7e-175
Identities = 364/380 (96%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 1045 CAGGAGAAGGACATGGTAGTGCAGTGGACTGGTGGACATTAGGGATATTCATGTTCGAGC 1104
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAGGAGAAGGACACGGGAGTGCGGTGGACTGGTGGACATTAGGGATATTCATGTTCGAGC 1096
Query 1105 TGTTCTACGGAACAACACCGTTCAAAGGAATGGACCACGAGCTAACCCTTGCCAATATCG 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1097 TGTTCTACGGAACAACACCGTTCAAAGGAATGGACCACGAGCTAACCCTTGCCAACATCG 1156
Query 1165 TGGCTCGAGCACTCGAATTCCCGAAAGAACCAACGATTCCAAGCGCGGCCAAGGATCTGA 1224
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1157 TGGCTCGAGCCCTCGAATTCCCGAAAGAACCAACGATTCCAAGCGCAGCCAAGGATCTGA 1216
Query 1225 TCTCTCAGCTACTTGCCAAGGATCCTAGCCGACGGTTAGGGTCATCTCTAGGTGCAACGG 1284
||||||||||||| |||||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 1217 TCTCTCAGCTACTGGCCAAGGACCCGAGCAGACGGTTAGGGTCATCTCTGGGTGCAACGG 1276
Query 1285 CCGTGAAACGTCATCCATTTTTCCAAGGAGTGAATTGGGCATTGCTCATGTGTACTCGTC 1344
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CCGTGAAACGCCACCCATTTTTCCAAGGAGTGAATTGGGCATTGCTCATGTGTACTCGTC 1336
Query 1345 CTCCTTTTCTTCCTCCGCCTTTCCGCAAAGAACTTTTGTCAGATGACATTTGTCCGGAAA 1404
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1337 CTCCTTTTCTTCCTCCGCCTTTTCGCAAAGAACTTTTATCCGATGACATTTGTCCGGAAA 1396
Query 1405 CCCATGTCGACTATTATTAA 1424
||||||||||||||||||||
Sbjct 1397 CCCATGTCGACTATTATTAA 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5