BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44620.2
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937085 jgi|Araly1|937085|scaffold_501276.1 841 0.0
Ahg937091 jgi|Araly1|937091|scaffold_501282.1 595 2e-169
Ahg925072 jgi|Araly1|925072|scaffold_200633.1 104 2e-21
> Ahg937085 jgi|Araly1|937085|scaffold_501276.1
Length=751
Score = 841 bits (455), Expect = 0.0
Identities = 550/594 (93%), Gaps = 13/594 (2%)
Strand=Plus/Plus
Query 10 ATCTCCAACTTTTCAGGGGAATGATGATGTACTGTCCCAACCTCACGGCTTCTCTAACAA 69
||||||||||||||||||| | ||||||||||||||||||||||| |||||| |||||
Sbjct 1 ATCTCCAACTTTTCAGGGG-A--ATGATGTACTGTCCCAACCTCACCACTTCTCCAACAA 57
Query 70 TCCCTTCATATTTACCATTTTGCCACTACACTAGACAATTTCGTCCTTCTCATTTCCGAT 129
||||||| |||||||||||||||||| ||||| || |||| |||||||||||| ||||
Sbjct 58 TCCCTTCTTATTTACCATTTTGCCACCACACT-TAC--TTTCTTCCTTCTCATTTTCGAT 114
Query 130 CATCTGATAAAAACCCGAATCTCGTTTC-TATCATCCGAGCAAAACCCAGAATTTCTCAT 188
||||||| |||| ||||||||||||||| | | | || |||||||||||||||||||||
Sbjct 115 CATCTGACAAAACCCCGAATCTCGTTTCTTGT-TTTCGGGCAAAACCCAGAATTTCTCAT 173
Query 189 TCGCTTAGGTGCTTTGTATCATCTTCAATGGCGACTCCTCCTCCGACGCAGAGCAGCGAA 248
|| ||| ||||||||| |||||||||||||| || | ||||||||||||||||||||
Sbjct 174 TCCCTTCGGTGCTTTGCATCATCTTCAATGGAGA---CGACTCCGACGCAGAGCAGCGAA 230
Query 249 ACCAAACCTTACTCTGTTCTTTTTGTCTGTCTCGGAAACATTTGTCGCAGCCCAGCGGCT 308
|| ||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 231 ACGAAACCTTTCTCTGTTCTTTTTGTCTGTCTCGGAAACATTTGTCGGAGTCCAGCAGCT 290
Query 309 GAAGGTGTCTTTAGAGATATCGTGAAGAAGAGAGGTCTCGATTCCAAATTCA-ACATTGA 367
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 291 GAAGGTGTCTTTAGAGATATCGTGAAGAAGAGAGGTCTCGATTCCCAATTCATA-ATTGA 349
Query 368 TTCCGCTGGAACAATTGATTATCACGAGGGGAATATGGCGGATCCAAGAATGAGAAGTGC 427
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCCGCTGGAACCATTGGTTATCACGAGGGGAATATGGCGGATCCAAGAATGAGAAGTGC 409
Query 428 TGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTT 487
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 410 TGCGAAACGTCGCGGGATTGAGATAACATCATTATCCAGACCGATTAAGGCATCTGATTT 469
Query 488 CAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGAGGATATATTGAAGGC 547
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CAGGGAATTTGATCTCATTCTTGCAATGGATGACCAGAACAAAGAGGATATATTGAAGGC 529
Query 548 TTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAGGT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 TTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGATGCAGATAAGAAGGT 583
Score = 268 bits (145), Expect = 5e-71
Identities = 164/173 (95%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 667 AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 639
Query 727 ATTATGGTGGAGCCCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT 786
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 640 ATTATGGTGGAGCTCAAGGTTTTGAGAAGGTGCTGGACTTGCTTGAAGATGCTTGTGAGT 699
Query 787 CTTTGCTGGATAGTATCACTGCGCAAAGTTGATGATACTA-CAAGTACAAAGT 838
||||||||||||||||| ||| | |||||||||||||| | ||||| || |||
Sbjct 700 CTTTGCTGGATAGTATCCCTGTGGAAAGTTGATGATAC-AGCAAGTTCAGAGT 751
> Ahg937091 jgi|Araly1|937091|scaffold_501282.1
Length=731
Score = 595 bits (322), Expect = 2e-169
Identities = 357/374 (95%), Gaps = 1/374 (0%)
Strand=Plus/Plus
Query 229 CTCCGACGCAGAGCAGCGAAACCAAACCTTACTCTGTTCTTTTTGTCTGTCTCGGAAACA 288
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 188 CTCCGACGCAGAGCAGCGAAACTAAACCTTTCTCTGTTCTTTTTGTCTGTCTCGGAAACA 247
Query 289 TTTGTCGCAGCCCAGCGGCTGAAGGTGTC-TTTAGAGATATCGTGAAGAAGAGAGGTCTC 347
||||||| |||||||| |||||||||||| ||||||||| | ||||||||||||| ||||
Sbjct 248 TTTGTCGGAGCCCAGCAGCTGAAGGTGTCTTTTAGAGATTTTGTGAAGAAGAGAGATCTC 307
Query 348 GATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGGGGAATATGGCG 407
|||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 308 GATTCCCAATTCAACATTGATTCCGCTGGAACCATTGATGATCACGAGGGGAATATGGCG 367
Query 408 GATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGA 467
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 368 GATCCAAGAATGACAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCATTATCCAGA 427
Query 468 CCGATCAAGGCATCTGATTTCAGAGAATTTGATCTCATTCTTGCAATGGATGACCAGAAC 527
||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 428 CCGATTAAGGCATCTGATTTCAGGGACTTTGATCTCATTCTTGCAATGGATGAGCAGAAC 487
Query 528 AAAGAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGAT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AAAGAGGATATATTGAAGGCTTATAATGTGTGGAAAGCCAGAGGGAATTTCCCGCCCGAT 547
Query 588 GCAGATAAGAAGGT 601
||||||||||||||
Sbjct 548 GCAGATAAGAAGGT 561
Score = 300 bits (162), Expect = 2e-80
Identities = 170/174 (98%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 667 AGGTTAAGCTAATGTGTTCTTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 726
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGGTTAAGCTAATGTGTTCGTATTGCAAGAAACACAATGACAAGTTTGTTCCTGATCCAT 617
Query 727 ATTATGGTGGAGCCCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT 786
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATTATGGTGGAGCTCAAGGTTTTGAGAAGGTACTGGACTTGCTTGAAGATGCTTGTGAGT 677
Query 787 CTTTGCTGGATAGTATCACTGCGCAAAGTTGATGATACTACAAGTACAAAGTCC 840
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 678 CTTTGCTGGATAGTATCACTACGCAAAGTTGATGATACTACAAGTTCAAAGTCC 731
> Ahg925072 jgi|Araly1|925072|scaffold_200633.1
Length=205
Score = 104 bits (56), Expect = 2e-21
Identities = 66/71 (93%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 325 ATATCGTGAAGAAGAGAGGTCTCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTG 384
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||
Sbjct 16 ATATCGTGAAGAAGAGAGGTCTCGATTCCAATTTCATCATTGATTCGGCTGGAACCATTG 75
Query 385 ATTATCACGAG 395
||||||| |||
Sbjct 76 ATTATCATGAG 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5