BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44690.1
Length=3531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347545 jgi|Araly1|347545|fgenesh1_pg.C_scaffold_5000937 2313 0.0
> Ahg347545 jgi|Araly1|347545|fgenesh1_pg.C_scaffold_5000937
Length=4332
Score = 2313 bits (1252), Expect = 0.0
Identities = 1588/1751 (91%), Gaps = 20/1751 (1%)
Strand=Plus/Plus
Query 1766 ATCCCGATGTCAACAAATCAGATACTCTGG-A-A----GACCGGGAAGATTCCAGAGGTC 1819
|||| |||||||||| || ||||| ||||| | | || ||||||||| | ||||||
Sbjct 1298 ATCCTGATGTCAACAGATTAGATATTCTGGTAGACCGGGAACGGGAAGATGCTAGAGGTT 1357
Query 1820 TAAGGTATAGAGGAGGGTCCTTGAATGATAAAAAGGAAGCATACATGCAATGTGAAAGAC 1879
|||||||||||||||||||||| ||||||| | |||| |||| | | |||||||| |
Sbjct 1358 TAAGGTATAGAGGAGGGTCCTTAAATGATAGGATGGAAACATATTTACCTTGTGAAAGTC 1417
Query 1880 AG-AGACTCCTAAATGATTATGAAACTAACTCCTATGGCATGATGCATCCCCATGTCAAC 1938
|| | |||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1418 AGCA-ACTCTTAAATGATCATGAAACTAACTCCTATGGCATGATGTATCCCGATGTCAAC 1476
Query 1939 AAATCAGATACTCTGGTAGACCATGAAGATGGCAGAGGTCGGAGGTATAGAGGAGTTTCC 1998
|||||||||| ||||||||||| |||||| |||||||| |||||||||||||| |||
Sbjct 1477 AAATCAGATATTCTGGTAGACCGGGAAGATTCCAGAGGTCTAAGGTATAGAGGAGTGTCC 1536
Query 1999 TTGAATGATAAAAAGGAAGCATACTTGCAATGTGAAAGGCAGCGACTCCTAAACGATCAT 2058
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 1537 TTGAATGATAAAAAGGAAGCATACTTGCAATGTGAAAGCCAGCGACGCCTAAATGATCAT 1596
Query 2059 GAAACTGACTCTTACGTCATGAGGCATCCCGATGTCAACAAATCAGATATTCTGGTAGAC 2118
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 1597 GAAACTGACTCTTATGTCACGATGCATCCCGATGTCAACAAATCAGATATTCTGGTAGCC 1656
Query 2119 CATGAAGATGCCAGAGGTCGGAGGTATGGAGGAGTGTCCTTGAATGATAAAAAGGACGCA 2178
|||||||||||||||||| ||| |||| ||||||| |||| ||||||| |||| | |||
Sbjct 1657 CATGAAGATGCCAGAGGTTGGAAGTATATAGGAGTGCCCTTAAATGATAGAAAGAAAGCA 1716
Query 2179 TACTTGCAATGTGAAAACCAGCAACTCCTAAACGATTATGAAACTGACTCTTATGTCATG 2238
||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1717 TACTTGCAACGTGAAAGCCAACAACTCCTAAACGATTATGAAACTGACTCGTATGTCATG 1776
Query 2239 ATGCCTCCTGATGTCAACAGATCAGATATTCTAGTAGACCATGAAGATGCAAGAGGTCTA 2298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1777 ATGCCTCCTGATGTCAACAGATCAGATATTCTAGTAGACCATGAAGATGCCAGAGGTCTA 1836
Query 2299 AGGTATAGAGGAGTATCCTTAAATGATCGAAAGGAAGCATATTTTCAAAGTGAAAGCCAG 2358
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1837 AGGTATAAAGGAGTATCCCTAAATGATCGAAAGGAAGCATATTTTCAATGTGAAAGCCAG 1896
Query 2359 CAACTCCTAAAAGATCATGAAACTAACTCTTTTGGCATGATGCATCCCAGTCTCAATAAA 2418
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1897 CAACGCCTAAAAGATCATGAAACTAACTCTTATGGCATGATGCATCCCAATCTCAATAAA 1956
Query 2419 TCAGATATTCTTGTAAACGGGGAAGAAGCCAGAGCTCTTGAGCGTA-GAAGAGGATCCTT 2477
|||||||||||| || || ||||||| |||||||||||||||| || |||||| ||||||
Sbjct 1957 TCAGATATTCTTATAGACCGGGAAGATGCCAGAGCTCTTGAGC-TAAGAAGAGTATCCTT 2015
Query 2478 CGATGATGGAGAGGAATCATACATGGATTATAAAAGGGGGGATGCATATCTGCATTACGA 2537
|||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||| |
Sbjct 2016 CGATGATGGAAAGGAATCATACATGGATTATAGAAGGGGGGATGCATATCCGCGTTACAA 2075
Query 2538 AAGCCAACAACTTAAGAAAGATCATGACTATGGCATTGATGACAGGATATATCGTGATGT 2597
|||||||| | ||| ||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 2076 AAGCCAAC---TGAAGGAAGATTATGACTATGGCATTGATGACAAGATTTATCGTGATGT 2132
Query 2598 CAACTCGTCAGATATTATAGTAGACCATGGAGATGCCAAGGCGCTAGAGCTTAGGAGAGT 2657
|||||| ||||||||||| ||| |||||||||||||||| || |||||| |||| |||||
Sbjct 2133 CAACTCTTCAGATATTATTGTAAACCATGGAGATGCCAACGCACTAGAGGTTAGAAGAGT 2192
Query 2658 AGCCTTCATTGATAGAAATGAAGCGTATTTGGATAATGAAAGCAAGGATGTTTATCAGCA 2717
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2193 AGCCTTCCGTGATAGAAATGAAGCATATTTGGATAATGAAAGCAAGGATGTTTATCAGCA 2252
Query 2718 TTACAATAAACAACAACTGAAGTACTACGACTCTGGCATTGATGAGAGGATGTATCCTGC 2777
|||||| ||||||| ||||||| |||| |||||||| |||||||| ||||||||||||||
Sbjct 2253 TTACAAAAAACAACCACTGAAGGACTATGACTCTGGAATTGATGAAAGGATGTATCCTGC 2312
Query 2778 TGTCACCAAAGCAGAGATTGTGG-A--CCGAGGAGGTGCTAGAGCTCTAGAGCGTAAAGG 2834
|||||||||| |||||| ||||| | || |||||||||||||||||||||||||| |||
Sbjct 2313 TGTCACCAAATCAGAGACTGTGGTAGACCAAGGAGGTGCTAGAGCTCTAGAGCGTAGAGG 2372
Query 2835 AATGTCCTCGAATGACGGAAGGGAAGCCTATTTGCCCTATGAAAGCCAGCAACTCCTAAG 2894
| | ||||||||||| | ||||| ||||||||||| ||||||||||||| || |||||||
Sbjct 2373 ATTATCCTCGAATGATGAAAGGGGAGCCTATTTGCACTATGAAAGCCAGAAAATCCTAAG 2432
Query 2895 AGATCATGAAATTGATTCGTATGGGGTGATGCATCCTGATGTCAGTAGATCATCAGCTGG 2954
|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||
Sbjct 2433 GGATCATGAAATTGATTCGTATGGGATGATGCATCCTGACGTCAGTATATCATCAGCTGG 2492
Query 2955 CAAGCAAGATGAGGAAGCTCTTCGAGGCAGGAGATATCTTTTTGATGACCGAGATCAAGT 3014
|||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2493 CAAGCAAGATGAGGAAACTCTTCGAGGCAGGAGATATCTTTATGATGGTCGAGATCAAGT 2552
Query 3015 CTACTTGGATGATGAGCGTTTGCAACGACGTAATGGTGGTGATGTTAAAGTTTATGCCAA 3074
|||||||||||||||||| ||||||||||| ||||||||| ||||| ||||| |||||||
Sbjct 2553 CTACTTGGATGATGAGCGCTTGCAACGACGAAATGGTGGTCATGTTCAAGTTCATGCCAA 2612
Query 3075 TATGAGATATCAAGATGGTAGACAAGAGGTTTATCATTCGAATGATTCAATTTTGCGTAC 3134
||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 2613 TATGAGATATCCAGATGGTAGACAAGAGGTTTATCATTCAAATGATCCAATACTGCGTAC 2672
Query 3135 AAGAGATGATTATGGTCTTAGAGACAACGCAAGTGAGGTTATGCATGAGAATATGCCTTA 3194
||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||
Sbjct 2673 AAGAGATGATTATGGTCTTAGAGACGATGCAAGTGAGGTTATATATGAGAATATGGCTTA 2732
Query 3195 TGATTACAACTACAGG-GATGCTAAGCAATCAAGAATGTCTTATGAGAAGGCAGATAGTA 3253
||||||| ||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2733 TGATTACGACTAC-GGTGATGCTAAGCAATCAAGAATGTCTTATGAGAAGGAAGATAGGG 2791
Query 3254 AAAGGTTCCGTGAACATGAAGTAGCATATGATTACAGAGACAAGCTAGGGAACTATGCAG 3313
| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2792 AGAGGCTCCGCGAACGTGAAGTAGCGTATGATTACAGAGACAAGCTAGGGAACTATGCAG 2851
Query 3314 TGGATGGAGGAATAAGCAGAGAACAATTCCGATACTCAGCTGATGAAAGGAATTCTGGTA 3373
|||||||||||| ||||| ||| ||||||||||||| | ||||||||||||||| |||||
Sbjct 2852 TGGATGGAGGAACAAGCAAAGACCAATTCCGATACTTAACTGATGAAAGGAATTTTGGTA 2911
Query 3374 ATGTTGATCACACATCAACTC-GACGCCGTCGATTATCTGCAAAGGAGCGGTTAGGTGGG 3432
| ||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 2912 ACGTTGATCACACATCAACTCCG-CGCCGTCGATTATCTGCAAAAGAGCGGTTAGGTGGG 2970
Query 3433 CGTGTTGAAGAAGATTCACGTGTTCATGTGAAACATAGACTGCATCAGGTTAGAAACCCA 3492
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2971 CGTGTCGAAGAAGATTCACGTGTTCATGTGAAACATAGACTGCATCAGGTTAGAAACCCA 3030
Query 3493 AACCTAAAAGG 3503
|| ||||||||
Sbjct 3031 AAACTAAAAGG 3041
Score = 2017 bits (1092), Expect = 0.0
Identities = 1415/1571 (90%), Gaps = 21/1571 (1%)
Strand=Plus/Plus
Query 782 TAAGTCGTGGAGACCATGATTCACCAGTTGTGAGCAGGTGTGTCAAAGAGATAGTGGATG 841
|||| ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 474 TAAG-CGTGGAGACCATGATTCACCAATTGTGAGCAAGTGTGGCAAAGAGATAGTGGATG 532
Query 842 AAGCTCGGGATAATTATCATATAGGCTCTGATATAGCAATGAGAGAGTTTCCCAGTGTTA 901
|| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AATCTCGCAATCATTATCATATAGGCTCTGATATAGCAATGAGAGAGTTTCCCAGTGTTA 592
Query 902 GGCATGAGGTCAATAATGTGGCTAGAGAGAATGATCTTTTTATGCAGAGGAGAGGATCTT 961
|||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 593 GGCATGAGGTCAATAATGTGGCTAGAGAGAGTGATCTTCTTATGCAGACAAGAGGATCTT 652
Query 962 TATCAAAATCCCATGTCTGTGGTTCAAATATAGCTGATGTTGATGCGGCCGATACCCATC 1021
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 653 TATCAAAATCCCATGTCCGTGTTTCAAATATAGCTGATGTTGATGCGGCCGATACCCATC 712
Query 1022 TTGAGTTTAGCAGGAAAGAGAGGATGGCTGACCATTATGAGTCTGTGAAGGAAGATTATC 1081
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTGATTTTTGCAGGAAAGAGAGGATGGCTGACCATTATGAGTCTGTGAAGGAAGATTATC 772
Query 1082 CTTTTGTGGAGTTGGGATCAAGAGTGGTGGATGAAC-----G---A-GATGATCACTACA 1132
||||||||||||||||||||||||||||| |||||| | | |||||||||||||
Sbjct 773 CTTTTGTGGAGTTGGGATCAAGAGTGGTGAATGAACGAGATGATAAGGATGATCACTACA 832
Query 1133 GGAACTTCCGTAACGAAGAAAGAAAGGTTGTTTATTTGGATAACAAATGTCAAGTACTGA 1192
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 833 GGAACTTCTGTAACGAAGAAAGGAAGGTTGTTTATTTGGATAACAAATGTCAACCACTGA 892
Query 1193 GAAAGGATTATCTATATGATGGTGTTGACAGTAAGAAGAATCTTGATTTCAGTGAACCAT 1252
|||||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 893 GAAAGGATTATCAATGTGATGGTGTTGACAGTATGAAGAATCTTGATTTCTGTGAACCAT 952
Query 1253 ATGCTGTAGTAGATCGAGATGATAAAGCTTCACAGAGCATAACA-CGTTGCTTAAATAAA 1311
||||||| ||||||| || |||||| | ||||||| |||||| | || ||||||||||||
Sbjct 953 ATGCTGTCGTAGATCAAGGTGATAACGGTTCACAGCGCATAA-ATCGCTGCTTAAATAAA 1011
Query 1312 GAAAGGGAAGCATATTTGGATAATGAGAGAAATGCTGTTTTTTCAGATGATAAAAGACAG 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1012 GAAAGGGAAGCATATTTGGATAATGAGAGAAATGCTGTTTTTTCAGATGATAAAAGACGG 1071
Query 1372 GAACTGAGAAACGAGTATCACCCTGGCAATGATGGTAGGATACATTCTGATGTAGATATG 1431
||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||| |
Sbjct 1072 GAACTGAGAAACGAGTATCACTGTGGCAATGACGGTAGGATGCATTCTGAGGTAGATAGG 1131
Query 1432 GCAGATATTGTGGTAGATCAGGATGGAAGAGGAGTGCAGCTTCAACGACG-ATGCTTAAA 1490
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1132 GCAGATATTTTGGTAGATCAGGATGGAAGAGGAGTGCAGCTTCAACGA-GTATGCTTAAA 1190
Query 1491 CAAAGGAAAGGCAGCATACTTGGATAATGAAAGGAAGGATGTTTATCTGAATTACAAAAT 1550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CAAAGGAAAGGCAGCATACTTGGATAATGAAAGGAAGGATGTTTATCTGAATTACAAAAG 1250
Query 1551 CCAACAACTGGAGAAAGATTATGACTCTCGCTCTGATGCTAAGATTTATCCTGATGATGT 1610
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1251 CCGGCAACTGGAAAAAGATTATGACTCTCGCTCTGATGCTAGGATTTATCCTGATG-T-- 1307
Query 1611 CAACAGATTAGATATTCTAGCAGACTGGGAACGGGAAAATTCCAGAGGTCTAAGGTATAG 1670
|||||||||||||||||| | |||| ||||||||||| || | |||||| ||||||||||
Sbjct 1308 CAACAGATTAGATATTCTGGTAGACCGGGAACGGGAAGATGCTAGAGGTTTAAGGTATAG 1367
Query 1671 AGGAGGGTCCTTAAATGATAGAAGGGAAGCTTACTTGCAATGTGAAAGCCAGCAACTCCT 1730
||||||||||||||||||||| | |||| | || || | |||||||| ||||||||| |
Sbjct 1368 AGGAGGGTCCTTAAATGATAGGATGGAAACATATTTACCTTGTGAAAGTCAGCAACTCTT 1427
Query 1731 AAATGATTATGAAACTAACTCCTATGGCATAATGCATCCCGATGTCAACAAATCAGATAC 1790
||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1428 AAATGATCATGAAACTAACTCCTATGGCATGATGTATCCCGATGTCAACAAATCAGATAT 1487
Query 1791 TCTGGAAGACCGGGAAGATTCCAGAGGTCTAAGGTATAGAGGAGGGTCCTTGAATGATAA 1850
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1488 TCTGGTAGACCGGGAAGATTCCAGAGGTCTAAGGTATAGAGGAGTGTCCTTGAATGATAA 1547
Query 1851 AAAGGAAGCATACATGCAATGTGAAAGACAGAGACTCCTAAATGATTATGAAACTAACTC 1910
||||||||||||| ||||||||||||| ||| ||| |||||||||| |||||||| ||||
Sbjct 1548 AAAGGAAGCATACTTGCAATGTGAAAGCCAGCGACGCCTAAATGATCATGAAACTGACTC 1607
Query 1911 CTATGGCATGATGCATCCCCATGTCAACAAATCAGATACTCTGGTAGACCATGAAGATGG 1970
|||| || |||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 1608 TTATGTCACGATGCATCCCGATGTCAACAAATCAGATATTCTGGTAGCCCATGAAGATGC 1667
Query 1971 CAGAGGTCGGAGGTATAGAGGAGTTTCCTTGAATGATAAAAAGGAAGCATACTTGCAATG 2030
||||||| ||| ||||| |||||| |||| ||||||| |||| |||||||||||||| |
Sbjct 1668 CAGAGGTTGGAAGTATATAGGAGTGCCCTTAAATGATAGAAAGAAAGCATACTTGCAACG 1727
Query 2031 TGAAAGGCAGCGACTCCTAAACGATCATGAAACTGACTCTTACGTCATGAGGCATCCCGA 2090
|||||| || | ||||||||||||| ||||||||||||| || ||||||| || ||| ||
Sbjct 1728 TGAAAGCCAACAACTCCTAAACGATTATGAAACTGACTCGTATGTCATGATGCCTCCTGA 1787
Query 2091 TGTCAACAAATCAGATATTCTGGTAGACCATGAAGATGCCAGAGGTCGGAGGTATGGAGG 2150
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 1788 TGTCAACAGATCAGATATTCTAGTAGACCATGAAGATGCCAGAGGTCTAAGGTATAAAGG 1847
Query 2151 AGTGTCCTTGAATGATAAAAAGGACGCATACTTGCAATGTGAAAACCAGCAACTCCTAAA 2210
||| ||| | |||||| |||||| ||||| || |||||||||| |||||||| ||||||
Sbjct 1848 AGTATCCCTAAATGATCGAAAGGAAGCATATTTTCAATGTGAAAGCCAGCAACGCCTAAA 1907
Query 2211 CGATTATGAAACTGACTCTTATGTCATGATGCCTCCTGATGTCAACAGATCAGATATTCT 2270
||| |||||||| ||||||||| |||||||| ||| || |||| | ||||||||||||
Sbjct 1908 AGATCATGAAACTAACTCTTATGGCATGATGCATCCCAATCTCAATAAATCAGATATTCT 1967
Query 2271 -AGTAGACCATGAAGATGCAAGAGGTCTA-AGGTATAGAGGAGTATCCTTAAATGATCGA 2328
| |||||| |||||||| |||| ||| || || ||| |||||||||| ||||| ||
Sbjct 1968 TA-TAGACCGGGAAGATGCCAGAGCTCTTGAGCTA-AGAAGAGTATCCTTCGATGATGGA 2025
Query 2329 AAGGAAGCATA 2339
|||||| ||||
Sbjct 2026 AAGGAATCATA 2036
Score = 586 bits (317), Expect = 4e-166
Identities = 397/435 (91%), Gaps = 7/435 (2%)
Strand=Plus/Plus
Query 7 ATGAGAGAGCGGATTCGCGATTCTCTGCCTCAACGATTGTCGTCACCTTCTCCGACGAGT 66
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 1 ATGAGAGAGCGGATTCGCGATTCTCTGCCTCGACGATCGTCTTCACCTTCTCCGACGAGT 60
Query 67 GACCGTGACGGGAACGAGTCGAGCATGATTAAACTCGGCGATGTTTCAAGCCGTTCCGAT 126
||||||||| |||||||||| ||| ||||||||| |||||||||| ||| ||||||||||
Sbjct 61 GACCGTGACAGGAACGAGTCTAGCGTGATTAAACCCGGCGATGTTGCAAACCGTTCCGAT 120
Query 127 AAAATCGATATGGTTTCTCACAGAGTCGACGAACAGAAACACGATATTGACGGAATC-CG 185
|||||||| ||||||||||| ||||||| || | | |||| |||||||| || | | ||
Sbjct 121 CAAATCGATGTGGTTTCTCACGGAGTCGAGGACCGGGAACAAGATATTGATGGTA-CACG 179
Query 186 GCA-AGATTCTGATCTGTACGATGTAGAGATTCAAAGAAGCACTGAATTTTCTAATAAGG 244
| | |||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 180 G-AGAGATTCTGATCTGTACGACGTAGAGATTCAAAGACGCACTGGATTTTCTAATAAGG 238
Query 245 ACCGACgagaagaagaagagagagaCGATGAACGTTATACGAAACATTATCATCTTCAGG 304
||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 239 ACCGACGAGAAGAAGAAGATAGAGACGATGAACGTTATGTGAAACATTTTCATCTTCAGG 298
Query 305 AAGATTCCGGCAAACGTTATCCGGAATCATCGAGATTCATCACATCGCATGATCATCCAT 364
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 299 AAGATTCCGGCAAACGTTATGTGGAATCATCGAGATTCATCACATCGCAT-A--ATCCAT 355
Query 365 CGAGATTGAGCGACGAACCTAAGCCCTCTAGATTCATCACATCGCATGATGATGAGTATT 424
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGAGATTGAGTGACGAATCTAAGCCCTCTAGATTCATCACATCGCATGATGATGAGTATT 415
Query 425 CTCCATCTCATGGGA 439
|||||||||||||||
Sbjct 416 CTCCATCTCATGGGA 430
Score = 527 bits (285), Expect = 2e-148
Identities = 485/581 (83%), Gaps = 16/581 (3%)
Strand=Plus/Plus
Query 1606 GATGTCAACAGATTAGATATTCTAGCAGACTGGGAACGGGAAAATTCCAGAGGTCTAAGG 1665
|||||||||| || ||||||||| | | | || |||||| |||||||||||||||||
Sbjct 1468 GATGTCAACAAATCAGATATTCT-G--G--T-AGACCGGGAAGATTCCAGAGGTCTAAGG 1521
Query 1666 TATAGAGGAGGGTCCTTAAATGATAGAAGGGAAGCTTACTTGCAATGTGAAAGCCAGCAA 1725
|||||||||| |||||| ||||||| || |||||| |||||||||||||||||||||| |
Sbjct 1522 TATAGAGGAGTGTCCTTGAATGATAAAAAGGAAGCATACTTGCAATGTGAAAGCCAGCGA 1581
Query 1726 CTCCTAAATGATTATGAAACTAACTCCTATGGCATAATGCATCCCGATGTCAACAAATCA 1785
| |||||||||| |||||||| |||| |||| || ||||||||||||||||||||||||
Sbjct 1582 CGCCTAAATGATCATGAAACTGACTCTTATGTCACGATGCATCCCGATGTCAACAAATCA 1641
Query 1786 GATACTCTGGAAGACCGGGAAGATTCCAGAGGTCT--AAGGTATAGAGGAGGGTCCTTGA 1843
|||| ||||| || || |||||| |||||||| | ||| |||| ||||| | |||| |
Sbjct 1642 GATATTCTGGTAGCCCATGAAGATGCCAGAGGT-TGGAAG-TATATAGGAGTGCCCTTAA 1699
Query 1844 ATGATAAAAAGGAAGCATACATGCAATGTGAAAGACAGAGA-CTCCTAAATGATTATGAA 1902
|||||| |||| |||||||| ||||| ||||||| || | | |||||||| |||||||||
Sbjct 1700 ATGATAGAAAGAAAGCATACTTGCAACGTGAAAGCCA-ACAACTCCTAAACGATTATGAA 1758
Query 1903 ACTAACTCCTATGGCATGATGCATCCCCATGTCAACAAATCAGATACTCTGGTAGACCAT 1962
||| |||| |||| |||||||| ||| ||||||||| |||||||| ||| |||||||||
Sbjct 1759 ACTGACTCGTATGTCATGATGCCTCCTGATGTCAACAGATCAGATATTCTAGTAGACCAT 1818
Query 1963 GAAGATGGCAGAGGTCGGAGGTATAGAGGAGTTTCCTTGAATGATAAAAAGGAAGCATAC 2022
||||||| |||||||| ||||||| |||||| ||| | |||||| ||||||||||||
Sbjct 1819 GAAGATGCCAGAGGTCTAAGGTATAAAGGAGTATCCCTAAATGATCGAAAGGAAGCATAT 1878
Query 2023 TTGCAATGTGAAAGGCAGCGACTCCTAAACGATCATGAAACTGACTCTTACGTCATGAGG 2082
|| ||||||||||| |||| || |||||| |||||||||||| ||||||| | ||||| |
Sbjct 1879 TTTCAATGTGAAAGCCAGCAACGCCTAAAAGATCATGAAACTAACTCTTATGGCATGATG 1938
Query 2083 CATCCCGATGTCAACAAATCAGATATTCTGGTAGACCATGAAGATGCCAGAGGTCG-GAG 2141
|||||| || |||| |||||||||||||| |||||| ||||||||||||| || |||
Sbjct 1939 CATCCCAATCTCAATAAATCAGATATTCTTATAGACCGGGAAGATGCCAGAGCTCTTGAG 1998
Query 2142 GTATGGAGGAGTGTCCTT-GAATGATAAAAAGGACGCATAC 2181
|| | || ||| ||||| || |||| |||||| |||||
Sbjct 1999 CTAAGAAG-AGTATCCTTCGA-TGATGGAAAGGAATCATAC 2037
Score = 496 bits (268), Expect = 6e-139
Identities = 479/580 (83%), Gaps = 18/580 (3%)
Strand=Plus/Plus
Query 1931 ATGTCAACAAATCAGATACTCTGGTAGACC----A--TGAAGATGGC-AGAGGTCGGAGG 1983
||||||||| || ||||| ||||||||||| | |||||| || |||||| |||
Sbjct 1304 ATGTCAACAGATTAGATATTCTGGTAGACCGGGAACGGGAAGAT-GCTAGAGGTTTAAGG 1362
Query 1984 TATAGAGGAGTTTCCTTGAATGATAAAAAGGAAGCATACTTGCAATGTGAAAGGCAGCGA 2043
|||||||||| ||||| ||||||| | |||| |||| || | |||||||| |||| |
Sbjct 1363 TATAGAGGAGGGTCCTTAAATGATAGGATGGAAACATATTTACCTTGTGAAAGTCAGCAA 1422
Query 2044 CTCCTAAACGATCATGAAACTGACTCTTACGTCATGAGGCATCCCGATGTCAACAAATCA 2103
||| |||| |||||||||||| |||| || | ||||| | ||||||||||||||||||||
Sbjct 1423 CTCTTAAATGATCATGAAACTAACTCCTATGGCATGATGTATCCCGATGTCAACAAATCA 1482
Query 2104 GATATTCTGGTAGACCATGAAGATGCCAGAGGTCGGAGGTATGGAGGAGTGTCCTTGAAT 2163
|||||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||
Sbjct 1483 GATATTCTGGTAGACCGGGAAGATTCCAGAGGTCTAAGGTATAGAGGAGTGTCCTTGAAT 1542
Query 2164 GATAAAAAGGACGCATACTTGCAATGTGAAAACCAGCAACTCCTAAACGATTATGAAACT 2223
||||||||||| ||||||||||||||||||| ||||| || |||||| ||| ||||||||
Sbjct 1543 GATAAAAAGGAAGCATACTTGCAATGTGAAAGCCAGCGACGCCTAAATGATCATGAAACT 1602
Query 2224 GACTCTTATGTCATGATGCCTCCTGATGTCAACAGATCAGATATTCTAGTAGACCATGAA 2283
||||||||||||| ||||| ||| |||||||||| |||||||||||| |||| |||||||
Sbjct 1603 GACTCTTATGTCACGATGCATCCCGATGTCAACAAATCAGATATTCTGGTAGCCCATGAA 1662
Query 2284 GATGCAAGAGGTCT--AAGGTATAGAGGAGTATCCTTAAATGATCGAAAGGAAGCATATT 2341
||||| |||||| | ||| |||| |||||| ||||||||||| ||||| ||||||| |
Sbjct 1663 GATGCCAGAGGT-TGGAAG-TATATAGGAGTGCCCTTAAATGATAGAAAGAAAGCATACT 1720
Query 2342 TTCAAAGTGAAAGCCAGCAACTCCTAAAAGATCATGAAACTAACTCTTTTGGCATGATGC 2401
| ||| |||||||||| ||||||||||| ||| |||||||| |||| | || ||||||||
Sbjct 1721 TGCAACGTGAAAGCCAACAACTCCTAAACGATTATGAAACTGACTCGTATGTCATGATGC 1780
Query 2402 ATCCC-AGTCTCAATAAATCAGATATTCTTGTAAACGGGGAAGAAGCCAGAGCTCTTGAG 2460
||| | | |||| | |||||||||||| ||| || ||||| ||||||| ||| ||
Sbjct 1781 CTCCTGA-TGTCAACAGATCAGATATTCTAGTAGACCATGAAGATGCCAGAGGTCTA-AG 1838
Query 2461 CGTAGAA-G-AGGATCCTTCGATGATGGAGAGGAATCATA 2498
||| || | || |||| | ||||| || ||||| ||||
Sbjct 1839 -GTATAAAGGAGTATCCCTAAATGATCGAAAGGAAGCATA 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133353735792
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5