BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44716.1

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897234 jgi|Araly1|897234|Al_scaffold_0005_1200                    604    2e-172


> Ahg897234 jgi|Araly1|897234|Al_scaffold_0005_1200
Length=438

 Score =  604 bits (327),  Expect = 2e-172
 Identities = 407/444 (92%), Gaps = 12/444 (3%)
 Strand=Plus/Plus

Query  31   ATGCAAGAAATTCCCAGAAAAATCGTCcttcttcttctcttcttctctctAATTCTCCCA  90
            ||||||||||||||||| || ||| |||||||||||||| |||||| ||||||| || ||
Sbjct  1    ATGCAAGAAATTCCCAGCAAGATCCTCCTTCTTCTTCTCCTCTTCTTTCTAATTTTCTCA  60

Query  91   CCTTCCACACAAAACCCACAAGAAGAAATCTACTACTGTGGTAACACTCTAATCTCAAAC  150
            ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct  61   CCTTCCACACAAAACCCACAAGAAGAAATATACTACTGTGGTAAAACTCCAATCTCAAAC  120

Query  151  CCATCTGAA-CTCATAACCTGCAGATCTGGAAAACTCTACTTCAAAAGCTCAACTGGTCT  209
            |||||| ||  |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  121  CCATCT-AATTTCATAACCTGCAGATCTGGAAAACTCTACTTCAAAACCTCAACTGGTCT  179

Query  210  CTTCCATGTCTCCGGAACAGAGGAAGTGAAATTAAGAGCTAGGGTGTCTATGGAAGTCGA  269
            |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  180  CTTCCATGTCTCTGGAACAGAGGAAGTGAAATTAAGAGCTAGAGTTTCTATGGAAGTCGA  239

Query  270  AGGTCACATACCGGACTTATGCATCGCTTGTGAGAGACCTA-AGGGTAACTGTGGTGTTG  328
            |||||||||||| || ||||||||||||||||||||||| | | ||||||||||||| ||
Sbjct  240  AGGTCACATACCAGATTTATGCATCGCTTGTGAGAGACC-AGATGGTAACTGTGGTGCTG  298

Query  329  CTCTAAGATGTCTTTGTCATCCTAAAGAATGCAAGAATAAAGTTATCAACTTTGGAACCA  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  CTCTAAGATGTCTTTGTCATCCTAAAGAATGCAAGAATAAAGTTATCAACTTTGGAACCA  358

Query  389  AGTCTCGAGCTTTATCTGGTAACTTACA-ACAG---CTTCTTCCACTTTTGTTGTTGTTG  444
            ||||||||||||| |||||||||  ||| ||||   ||||||||||| || | ||||  |
Sbjct  359  AGTCTCGAGCTTTTTCTGGTAACA-ACATACAGAAGCTTCTTCCACTATTATCGTTG--G  415

Query  445  GCTATGTTTCTTATCTGTTTTTGA  468
             || ||||||||||||||||||||
Sbjct  416  -CTTTGTTTCTTATCTGTTTTTGA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21672374552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5