BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44717.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897421 jgi|Araly1|897421|Al_scaffold_0005_1387                    246    9e-65
  Ahg897235 jgi|Araly1|897235|Al_scaffold_0005_1201                    202    2e-51


> Ahg897421 jgi|Araly1|897421|Al_scaffold_0005_1387
Length=555

 Score =  246 bits (133),  Expect = 9e-65
 Identities = 305/382 (80%), Gaps = 35/382 (9%)
 Strand=Plus/Plus

Query  128  AGACTTTGAAAAG-GGTACCATCAAGAGTGTTTCCTTCATGAGGATTG-AGG-GAAAAGG  184
            ||||| || |||| |||||| ||||||| ||| ||||||||||||||| ||| |||||  
Sbjct  105  AGACTATG-AAAGTGGTACCCTCAAGAGAGTTGCCTTCATGAGGATTGAAGGAGAAAA--  161

Query  185  TGCTGAA-GAGAAAGCATTGGAACTTAGTGGAACTG-C-----A--AT---C-G---T--  226
            |||  || |||||||||||||||||||||||||||| |     |  ||   | |   |  
Sbjct  162  TGC-CAATGAGAAAGCATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTGCAATCG  220

Query  227  TAAAG-CTGCACCATGACAGAAAGAAACCATGGATCATTCATTGACGTGCTGCT-CT--T  282
            | ||| |||||||||| |||||||||  |||||||| ||  | | | |||| || ||  |
Sbjct  221  TTAAGGCTGCACCATGGCAGAAAGAAGTCATGGATCCTTGGT-GTCCTGCTTCTGCTGCT  279

Query  283  GCTGAGAGAAGAACCAAAGAACAAAGCCTAAACGTTACTGGATATGACACTT-TGCTTCC  341
            ||||  ||  |  ||||||||||  |  |||| ||||||||||||||||||| | |||||
Sbjct  280  GCTGCCAG--GC-CCAAAGAACACTGTGTAAATGTTACTGGATATGACACTTCT-CTTCC  335

Query  342  TGTGATTGATATCGAGATGGCGGTGTGTAAATATCTCTCTTCATATGGAGAGGTCACGCG  401
            || |||||||||||||||||| |||||| ||| ||||||||||| |||||||||| | ||
Sbjct  336  TGAGATTGATATCGAGATGGCTGTGTGTGAATTTCTCTCTTCATGTGGAGAGGTCGCCCG  395

Query  402  AGTAATGGTTCTCCCTAGCTATGCTCGCGTTTCTATTATAGGAGAAGGATGTGTAAAGAA  461
            | | |||||||||||||||| |||| | |||||| || ||||||||||||||||| | ||
Sbjct  396  AATTATGGTTCTCCCTAGCTGTGCTTGTGTTTCTCTTGTAGGAGAAGGATGTGTAGACAA  455

Query  462  GGCACTAAAACTAAGTGGATGT  483
            ||| |||  |||||||||||||
Sbjct  456  GGCGCTACGACTAAGTGGATGT  477


> Ahg897235 jgi|Araly1|897235|Al_scaffold_0005_1201
Length=369

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 136/149 (91%), Gaps = 2/149 (1%)
 Strand=Plus/Plus

Query  72   GCATTGAGAAAACACTTCTCTTCATGCGGAAAGATCAAACATATTTATGTTCCTAGAGAC  131
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  34   GCATTGAGAAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGAC  93

Query  132  TTTGAAAAG-GGTACCATCAAGAGTGTTTCCTTCATGAGGATTGAGGGAAAAGGTGCTGA  190
            ||||||| | |||||| ||||||| ||| | |||||||||||||||||| ||||||| ||
Sbjct  94   TTTGAAA-GTGGTACCCTCAAGAGAGTTGCTTTCATGAGGATTGAGGGAGAAGGTGCCGA  152

Query  191  AGAGAAAGCATTGGAACTTAGTGGAACTG  219
            ||| || ||||||||||||||||||||||
Sbjct  153  AGACAAGGCATTGGAACTTAGTGGAACTG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5