BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44718.1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484875 jgi|Araly1|484875|fgenesh2_kg.5__867__AT3G44718.1          311    1e-84


> Ahg484875 jgi|Araly1|484875|fgenesh2_kg.5__867__AT3G44718.1
Length=204

 Score =  311 bits (168),  Expect = 1e-84
 Identities = 194/206 (94%), Gaps = 4/206 (2%)
 Strand=Plus/Plus

Query  1    ATGACAAAATCGAATGTGA-TAATGGTAATATTGTTGGTGATGATTGCTGCAATAGGAGG  59
            |||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||| 
Sbjct  1    ATGACAAAATGGAATGT-AGTAATGGTAATATTGTTGGTGATGATTGCTGCGATAGGAGT  59

Query  60   AGAAGCACGACATAAACATAGAAAGACTTGGATAGGTTGCTTTAGGTATTGTTCTCGCAG  119
            ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct  60   AGAAGCAAGACATAAACATAGAAAGACTTGGATAGGTTGCTTTCGGTATTGTTCTCGCA-  118

Query  120  C-TGTAGCGAGTACGATGGAAATTGCTTTGAACATTGTAAGATCAAATGTGGTGGTCCTA  178
            | || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  119  CTTGCAGCGAGTACGATGGAATTTGCTTTGAAGATTGTAAGATCAAATGTGGTGGTCCTA  178

Query  179  CTCCTCCAAAAACTAATTCAAGGTAG  204
            ||||||||||||||||||||||||||
Sbjct  179  CTCCTCCAAAAACTAATTCAAGGTAG  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6912075241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5