BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44720.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484876 jgi|Araly1|484876|fgenesh2_kg.5__868__AT3G44720.1 2001 0.0
Ahg930205 jgi|Araly1|930205|scaffold_302662.1 76.8 5e-13
> Ahg484876 jgi|Araly1|484876|fgenesh2_kg.5__868__AT3G44720.1
Length=1356
Score = 2001 bits (1083), Expect = 0.0
Identities = 1233/1308 (94%), Gaps = 0/1308 (0%)
Strand=Plus/Plus
Query 83 TTTGTCTTACCATCATTACCAAACCATGCAAGCCGCAACGTCGTGTGATCTCAAGTTCCG 142
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 49 TTTGTCTTACCATCATTACCAAATCATGCAAGCCGCTACGTCGTGTGATCTCAAGTTCCG 108
Query 143 ATCAACAGATCCGACGTCTAGGAACAAATGTTTCTCCCACGCGATTCCAAAGCGCGTGGC 202
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 109 ATCAACAAATCCGACGGCTAGGAACAAATGTTTCTCTCACGCGATTCCAAAGCGCGTGGC 168
Query 203 TGTTACGTGCGGTTATAGGTCGGAGTCGTTTAGCTTCCCTAACGGTGTCTCCGTGAGTCG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGTTACGTGCGGTTATAGGTCGGAGTCGTTTAGCTTCCCTAACGGTGTCTCCGTGAGTCG 228
Query 263 ATCTGATTGGCAAAGCTCATGTGCCATTTTATCTAGTAAAGTTGCTTCTGTTGAAAATAC 322
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 229 ATCTGATTGGCAAAGCTCATGTGCCATTTTATCTAGCAAAGTTGCTTCTGTTGAAAATCC 288
Query 323 CGGTGGTTTAGCGGACAAAATCGCCGCCGTTAATGGTCACACGAACGGCTCTGTGAATCT 382
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 289 CGGTGGTTTAGCCGACAAGATCGCCGCCGTTAATGGTCACACGAACGGCTCTGTTAATCT 348
Query 383 TGGTCTCGTCGCCGTTGAGTCAACTAACGGAAAGTTAGCTCCTGCTCAGCCGTTGACTAT 442
|||| |||||||||||||||| ||||||||||| |||||||| | |||||||||||||||
Sbjct 349 TGGTATCGTCGCCGTTGAGTCTACTAACGGAAAATTAGCTCCGGTTCAGCCGTTGACTAT 408
Query 443 TACTGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTACCAAGGCGT 502
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 409 TACGGATCTATCTCCGGCACCGTTGCATGGTTCTAGTCTACGTGTAGCTTATCAAGGTGT 468
Query 503 TCCCGGAGCTTACTCGGAAGCAGCTGCCGGAAAAGCTTATCCCAATTGCGACGCCATTCC 562
|||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 469 TCCCGGTGCTTACTCGGAGGCAGCCGCCGGAAAAGCTTATCCCAATTGCGATGCTATTCC 528
Query 563 TTGTGACCAGTTTGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATCGAGCTGT 622
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 529 TTGTGACCAGTTCGACGTTGCTTTTCAGGCGGTGGAGCTTTGGATCGCTGATAGAGCTGT 588
Query 623 GCTTCCGGTGGAGAACTCACTCGGTGGTTCGATCCATCGAAACTATGATCTTCTTCTCCG 682
|||||||||||||||||||||||||||||| || ||||| ||||||||||| || |||||
Sbjct 589 GCTTCCGGTGGAGAACTCACTCGGTGGTTCCATTCATCGGAACTATGATCTCCTCCTCCG 648
Query 683 TCACCGTCTTCACATCGTTGGAGAAGTTCAGATTCCGGTCCACCATTGCCTCCTCGCACT 742
|||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 649 TCACCGTCTTCATATTGTTGGAGAAGTTCAGATTCCGGTTCACCATTGCCTCCTTGCACT 708
Query 743 CCCGGGAGTCCGAACTGACTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCCCTAGCGCA 802
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 709 CCCGGGAGTCCGAACGGATTGTGTTTCGCGGGTGATCTCTCACCCGCAAGCGCTAGCCCA 768
Query 803 GACGGAACACTCCCTCGACGTCCTTACACCACATGCAGCGCGTGAGGCTTTCCATGACAC 862
|| |||||||||||||| || || || |||||||| ||||||||||||||||| |||||
Sbjct 769 AACAGAACACTCCCTCGATGTTCTCACTCCACATGCGGCGCGTGAGGCTTTCCACGACAC 828
Query 863 AGCGGCTGCTGCGGAGTATATCTCAGCTAACGACCTACATGACACGGCGGCTGTGGCGAG 922
||||||||||||||| || ||| ||||||||||||||||||||||||||||||| || ||
Sbjct 829 AGCGGCTGCTGCGGAATACATCGCAGCTAACGACCTACATGACACGGCGGCTGTAGCCAG 888
Query 923 CGCACGCGCCGCTGAGCTTTACAACCTCCAGATATTAGCGGATGGGATTCAAGACGACCC 982
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 889 CGCACGCGCCGCTGAGCTCTACAACCTCCAGATATTAGCTGATGGAATTCAAGACGACCC 948
Query 983 GGGGAACGTCACTCGTTTCCTAATGTTGGCGCGTGAGCCTATAATCCCACGCACGGACCG 1042
|||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 949 GGGGAACGTCACGCGCTTCCTAATGTTAGCGCGTGAGCCGATAATCCCACGCACGGACCG 1008
Query 1043 GCCATTCAAGACTAGCATCGTCTTTGCTGCCCAAGAGCACAAAGGAACTAGCGTCCTCTT 1102
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1009 GCCATTCAAGACTAGCATAGTCTTTGCTGCCCAAGAGCACAAAGGAACTAGTGTTCTCTT 1068
Query 1103 TAAAGTCCTCTCGGCTTTCGCTTTCAGAGACATTAGCCTGACCAAGATCGAGTCCCGGCC 1162
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CAAAGTCCTCTCGGCCTTCGCTTTCAGAGACATTAGCCTGACCAAGATCGAGTCCCGGCC 1128
Query 1163 TCACCATAACCGCCCGCTTAGGGTTGTTGGTGACGGGAGCTTTGGGACGTCGAAGAACTT 1222
||| || |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1129 TCATCACAACCGCCCACTCAGGGTCGTTGGTGACGGGAGCTTCGGGACATCGAAGAACTT 1188
Query 1223 CGAGTACATGTTTTACGTGGATTTTGAGGCATCGATGGCTGAGCCGCGTGCACAGAACGC 1282
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1189 CGAGTACATGTTTTACGTGGATTTTGAAGCGTCGATGGCGGAGCCGCGTGCACAGAACGC 1248
Query 1283 GCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTGCTGGGAAGTTACCCCATGGA 1342
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1249 GCTTGCGGAGGTTCAAGAGTACACGTCGTTCCTAAGGGTGTTGGGAAGTTACCCCATGGA 1308
Query 1343 TATGACACCATGGTCCATGACATCCACAGAAGAAGCATGACCCCATCG 1390
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1309 TATGACACCATGGTCCATGACATCCACAGAAGACGCATGACCCCATCG 1356
> Ahg930205 jgi|Araly1|930205|scaffold_302662.1
Length=296
Score = 76.8 bits (41), Expect = 5e-13
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 531 GGAAAAGCTTATCCCAATTGC-GACGCCATTCCTTGTGACCAGTTTGACGTTGCTTTTCA 589
|||||||| ||||| || | | || | |||| ||||| || || || ||||| |||||
Sbjct 163 GGAAAAGCATATCCGAAAT-CTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCA 221
Query 590 GGCGGTGGAGCTTTGGATCGCTGATCG 616
|||||||||||||||||||||||||||
Sbjct 222 GGCGGTGGAGCTTTGGATCGCTGATCG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5