BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44730.1
Length=3607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484877 jgi|Araly1|484877|fgenesh2_kg.5__869__AT3G44730.1 5600 0.0
> Ahg484877 jgi|Araly1|484877|fgenesh2_kg.5__869__AT3G44730.1
Length=3507
Score = 5600 bits (3032), Expect = 0.0
Identities = 3353/3510 (96%), Gaps = 13/3510 (0%)
Strand=Plus/Plus
Query 108 AGCTCTGAGAAGATACCAAGCGGTGGCATGGCTGAGACAGATGGACCAAGGCGCGATGGA 167
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AGCTCTGAGAAGGTACCAAGCGGTGGCATGGCTGAGACAGATGGACCAAGGCGCGGCGGA 60
Query 168 GACACTCCCGGAAAAACCGTCGGAAGACGAGTTCTCCCTCGCCCTCCGCAACGGCCTCAT 227
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 GTCACTCCCGGAAAAACCGTCGGAAGACGAGTTCTCCCTCATTCTCCGCAACGGTCTCAT 120
Query 228 TCTCTGCAACGTCCTCAACAAAGTCAATCCCGGTTCTGTTCTCAAGGTGGTGGAGAATCC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTGCAACGTCCTCAACAAAGTCAATCCCGGTTCTGTTCTCAAGGTGGTGGAGAATCC 180
Query 288 GATTACGCCAGCTATTCAGTACGCGGATGGAGCGGCGCAATCGGCAATTCAATATTTTGA 347
||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 181 GATTACGCCAGCTGTTCAGTACGCCGAGGGAGCGGCGCAATCCGCAATTCAATATTTTGA 240
Query 348 GAACATGAGGAACTTTCTTAAAGCTGTAGAGGATATGCAGCTTTTAACATTTGGAGCTTC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACATGAGGAACTTTCTTAAAGCTGTAGAGGATATGCAGCTTTTAACATTTGGAGCTTC 300
Query 408 TGATCTCGAGAAGGGAGGATCGTCGAACAAAGTAGTAGATTGTATTTTGTGTTTGAAAGG 467
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 301 TGATCTCGAAAAGGGAGGATCGTCGAATAAAGTAGTAGATTGCATTTTGTGTTTGAAAGG 360
Query 468 TTTTTACGAGTGGAAACAAGCGGGTGGAGTTGGAGTATGGAGGTATGGAGGGACTGTGAG 527
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 GTTTTACGAGTGGAAACAAGCGGGTGGAGTGGGAGTATGGAGGTATGGAGGGACTGTGAG 420
Query 528 GATAGTATCATTCAATCGAAAAGGCAGTTCTCCGCCGCAGTATGGGATTGGTAGTGAAAG 587
|||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GATAGTCTCTTTCAATCCAAAAGGCAGCTCTCCGCCGCAGTATGGGATTGGTAGTGAAAG 480
Query 588 TACTACCGATGAGTCTGTTTCTTTGGATGAATCTGAGTCTTCTCAGTATGACCAGCTTTT 647
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 CACTACCGATGAGTCTGTTTCTTTGGACGAATCTGAGTCTTCTCAGTATGACCAGCTTTT 540
Query 648 GGATTTTCTTCATCTTTCTAATGAGATCTCAGCTGAGGAATCTGAAACTGCAATCTCCTT 707
|||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 541 GGATTTTCTTCACCTTTCTAATGAGATTTCAACTGAGGAATCTGAAACTGCAATCTCCAT 600
Query 708 GGCTTTTCTTTTTGATCATTTCGCGCTTCAGCTTCTACATGGTTACCTTAAGGAGAGTGA 767
||| ||||||||||||||||| ||||||||||||||||||||||| | || ||||||||
Sbjct 601 GGCCTTTCTTTTTGATCATTTTGCGCTTCAGCTTCTACATGGTTATATCAAAGAGAGTGA 660
Query 768 TGGGATCAATGATATGCCTTTAAATGAAATGGTGATTGATACATTGCTGAACAGGGTAGT 827
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 TGGGATCAACGATATGCCTTTAAATGAAATGGTGATTGATACATTGCTCAACAGGGTAGT 720
Query 828 TAAGGATTTCTCTGCAATACTAGTTTCTCAGGGAGCTCAGCTGGGTTCGTTTCTAAGGAA 887
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 721 TAAGGATTTCTCTGCAATACTAGTTTCTCAGGGTGCTCAGTTGGGTTCGTTTCTAAAGAA 780
Query 888 AATACTGAAATGTGATAACGGGGATCTGTCAAGATCAGAGTTTCTAGCAGCAGTCTTCAG 947
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 781 GATACTGAAATGTGATAACGGGGATCTGTCAAGATCAGAGTTTTTAGCAGCAGTCTTCAG 840
Query 948 ATACCTTCAGCACAGAAAAGATTTGGTGTCAAAGGAGTTTTCAAAGTTTTGTAAATGTGG 1007
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 ATACCTTCAGCACAGAAAAGATTTGGTGTCGAAGGAGTTTTCAAAGTTTTGTAAATGTGG 900
Query 1008 CGGAAAGCTTGAGTTTAGTAGACTAAACGCCCGCGAATTTTCTCCGGGTCATGTAGAAGC 1067
||||||||||||||||| ||||| ||||| | |||| |||||||| ||||||| ||||||
Sbjct 901 CGGAAAGCTTGAGTTTATTAGACCAAACGTCAGCGAGTTTTCTCCTGGTCATGCAGAAGC 960
Query 1068 TATTGGTCTTCAACAGAAAGAGCTGGAGGAAGTTAAATCAAATTTTGTGGAAACAAGAAG 1127
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 961 TATTGGTCTTCAACAGAAAGAGCTTGAGGATGTAAAATCAAATTTTGTGGAAACAAGAAG 1020
Query 1128 CCAAGTTAAACAAATGCAGTCAGAATGGCAGAAAGAGCTTCAGAGGATAGTCCATCACGT 1187
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 CCAAGTTAAACAAATGCAGTCAGAATGGCAGAAAGAGCTTCAAAGGATAGTCCATCACGT 1080
Query 1188 TAAGGCCATGGAAGTTACATCTTCTTCTTACCACAAGGTTCTGGAGGAAAATCGCTTACT 1247
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1081 TAAGGCCATGGAAGTTACATCTTCTTCTTACCACAAGATTCTGGAGGAAAATCGCTTACT 1140
Query 1248 TTACAATGAGGTTCAAGATCTCAAAGGCACCATTAGAGTTTACTGCAGAGTCAGACCTTT 1307
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1141 TTACAATGAGGTCCAAGATCTCAAAGGGACCATTAGAGTCTACTGCAGAGTCAGACCTTT 1200
Query 1308 CTTCCAAGAACAAAAAGATATGCAATCAACTGTGGATTATATTGGAGAAAATGGTAATAT 1367
||| |||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1201 CTTACAAGGACAAAAAGATATGCAATCAACCGTTGATTATATTGGAGAAAATGGTAATAT 1260
Query 1368 TATCATTAACAATCCTTTCAAGCAGGAGAAAGATGCACGGAAAATATTTTCCTTCAACAA 1427
||| ||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 1261 TATAATTAATAATCCTTTCAAGCAGGAAAAAGATGCACGAAAAATATTTGCCTTCAACAA 1320
Query 1428 AGTATTTGGACAGACTGTCTCACAAGAGCAAATCTACATTGACACTCAACCGGTAATAAG 1487
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1321 AGTATTTGGACAGAATGTCTCACAAGAGCAAATCTACATTGACACTCAGCCGGTAATAAG 1380
Query 1488 GTCCGTCCTCGACGGATTCAATGTTTGTATCTTCGCGTATGGGCAAACCGGTTCAGGGAA 1547
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTCCGTCCTTGACGGATTCAATGTTTGTATCTTCGCGTATGGGCAAACCGGTTCAGGGAA 1440
Query 1548 AACGTATACGATGAGTGGGCCAGATCTGATGACGGAGACAACTTGGGGCGTGAACTACCG 1607
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1441 AACGTATACGATGAGTGGGCCAGATCTGATGACTGAAACAACTTGGGGCGTGAATTACCG 1500
Query 1608 AGCTCTACGCGATCTCTTCCAGCTTTCAAATGCAAGAACACATGTGGTGACTTATGAAAT 1667
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1501 AGCTCTACGTGATCTCTTCCAGCTTTCAAATGCCAGAACACATGTGGTGACTTATGAAAT 1560
Query 1668 TGGAGTCCAAATGATCGAAATATATAATGAACAAGTTAGAGATCTACTAGTCAGTGATGG 1727
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1561 TGGAGTCCAAATGATAGAAATATATAATGAACAAGTTAGAGATTTACTAGTCAGTGATGG 1620
Query 1728 TTCCTCCAGAAGATTAGACATACGCAATAATTCTCAACTCAATGGCCTTAATGTACCCGA 1787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TTCCTCCAGAAGATTAGACATACGCAATAATTCTCAACTCAATGGCCTTAATGTACCCGA 1680
Query 1788 TGCAAACTTGATTCCAGTTTCTAATACTCGAGATGTCCTTGATTTGATGAGGATTGGCCA 1847
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1681 CGCAAGCTTGATTCCAGTTTCTAATACTCGAGATGTTCTTGATTTGATGAGGATTGGCCA 1740
Query 1848 AAAGAATCGTGCTGTGGGTGCCACTGCTTTGAATGAGAGGAGCAGCCGTTCTCATAGTGT 1907
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1741 AAAGAATCGTGCAGTGGGTGCCACTGCTTTGAATGAGAGGAGCAGTCGTTCTCATAGTGT 1800
Query 1908 ATTAACTGTTCACGTCCAAGGAAAAGAATTGGCCTCAGGATCCATTTTAAGAGGCTGCCT 1967
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1801 CTTAACCGTTCACGTCCAAGGAAAAGAATTGGCCTCAGGGTCCATTTTAAGAGGCTGCCT 1860
Query 1968 TCATTTAGTGGATTTGGCTGGAAGTGAAAGAGTAGAAAAATCCGAAGCTGTAGGCGAGAG 2027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TCATTTAGTGGATTTGGCTGGAAGTGAAAGAGTAGAAAAATCCGAAGCTGTAGGCGAGAG 1920
Query 2028 ACTCAAAGAAGCTCAACACATAAACAAATCGTTGTCTGCATTAGGAGATGTCATTTATGC 2087
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1921 ACTCAAAGAAGCTCAACACATAAACAAATCGTTGTCTGCATTAGGAGATGTCATCTATGC 1980
Query 2088 ACTTGCACAAAAGAGTTCCCACGTTCCCTACAGAAATAGCAAGCTTACACAAGTTCTGCA 2147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 ACTTGCACAAAAGAGTTCCCACGTTCCCTACAGAAATAGCAAGCTTACACAAGTTCTGCA 2040
Query 2148 GGACTCCTTAGGTGGA---C-AAG-CAA---AAA-CTTTAATGTTTGTACATATTAATCC 2198
|| ||||||||| | | ||| ||| ||| ||||||||||||| |||||||| ||
Sbjct 2041 AGATTCCTTAGGTAAAATACTAAGACAAGCCAAAACTTTAATGTTTGTGCATATTAACCC 2100
Query 2199 TGAAGTTAATGCGGTAGGGGAGACTATCAGCACCCTTAAGTTTGCCCAAAGGGTTGCATC 2258
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2101 TGAAGTTAACGCGGTAGGAGAGACTATAAGCACCCTTAAGTTTGCCCAAAGGGTTGCATC 2160
Query 2259 CATTGAGCTTGGAGCAGCTCGATCAAACAAGGAAACCGGTGAAATTCGAGATCTTAAGGA 2318
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 TATTGAACTTGGAGCAGCTCGATCAAACAAGGAAACCGGTGAAATTCGAGATCTTAAGGA 2220
Query 2319 TGAGATATCCAGCCTTAAATCGGCCATGGAGAAGAAGGAAGCAGAGCTGGAACAATTGCG 2378
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2221 TGAGATATCAAGCCTTAAATCTGCGATGGAGAAGAAGGAAGCAGAGCTGGAACAATTGCG 2280
Query 2379 ATCAGGTAGCATTCGGAACACAACTGAATGTCAGAGAGCAAGAGCAGTTTCTCCTTTCCA 2438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 ATCAGGTAGCATTCGGAACACAACTGAATGTCAGAGAGCAAGAGCAGTTTCTCCTTTCCA 2340
Query 2439 TCTCCCAAGAACTGGTAACGGTGCTGGAACAAAGGCTGAGGCAAGTCCACAGCCAAACGA 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2341 TCTCCCAAGAACTGGTAACGGTGCTGGAACAAAGGCTGAGGCAAGTCCACAGCCAAATGA 2400
Query 2499 CGGTACCAGAAGCTACGAGACCAGAAGTTGCTCAACTGGCAAGCAGAGAAAGTCAGGGTT 2558
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2401 CAGTACCAGAAGCTACGAGACCAGAAGTTGCTCAACTGGCAAACAGAGAAAGTCAGGGTT 2460
Query 2559 TCCGTCTGCACTGAGAAATAGAGAAGCAAGCCCGAGGATGCCGAATCTAGCAGAAGAGAG 2618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 TCCGTCTGCACTGAGAAACAGAGAAGCAAGCCCGAGGATGCCGAATCTAGCAGAAGAGAG 2520
Query 2619 GTTAAATCCGAGTCCAAGTAGGAGATCACTATCCACAGACAGAGCATCAACCATCAAAAG 2678
||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2521 GTTAAATCCGAGTCCGAGTAGGAGATCACTATCCACAGATAGAGCATCTGCCATCAAAAG 2580
Query 2679 TAGGAATAAGCCCGACGTTACCCAAAACCTTCCGGTTTCAAGAACACCTTTTCCAGCTAG 2738
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2581 TAGGAATAAGCCCGACGTTACTCAAAACCTTCCAGTTTCAAGAACACCTTTTCCAGCTAG 2640
Query 2739 AGTACCAGTAGTCAAATCCTTTTCAACTGTTCCATTGAACCCATCAGCAGAAAATAACCA 2798
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2641 AGTACCAGTAGCCAAATCCTTTTCAACTGTTCCATTGAACCCATCAGCAGAAAACAACCC 2700
Query 2799 CAGGCTTCACACTGATAACTCTTCAGAGGCATTTCAAAATCATCAGAAGTTAAGCGCTCG 2858
||||| ||| || |||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 2701 CAGGCATCAAACAGATAACACTTCAGAGACATTTCACAATCATCAGAAGTTAAGCGCTCG 2760
Query 2859 AAAGCTCTTCCCTGAGATCGAGGAGGAACACATAAGGCATGCACTACACATACGTCAAGG 2918
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2761 AAAGCTCTTCCCTGAGATCGAGGAGGAACACATTAGGCATGCACTTCACATACGTCAAGG 2820
Query 2919 TGGTGTTAAGAAGACCAGAGCCGAGAGCAGTAAAGCCAAGGCAAAGCAACCATCACCAGC 2978
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2821 TGGTGTTAAGAAGACCAGAGCCGAGAGCAGTAAAGCCAAGGCAAAGCAACCATCGCCAGC 2880
Query 2979 TAGGTTTCAGAAACTCGATGTTGGGATCAGTTTGCGTTCTGATGCAGATTCTGAAGCAAA 3038
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2881 TAGGTTTCAGAAACTCGATGTTGGGATCAGTTTGCGTTCTGAGGCAGATTCTGAAGCAAA 2940
Query 3039 GGTAGGAAATTATCAGACCCAAAAGGGGAACAACAACCACAATGTGATACACTCAAGATT 3098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2941 GGTAGGAAATTATCAGACCCAAAAGGGGAACAACAACCACAATGTGATACACTCAAGATT 3000
Query 3099 CCAAAACTTCGACGTGGGTATCAGCCTATTCTCTGACCTTTGTGCCGGTGACAAATCAGA 3158
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 3001 CCAAAACTTCGACGTGGGTATCAGCCTGTTCTCTGACCTCTGTGCCGGTGACAAATCAGA 3060
Query 3159 TTCAACACTCAAGAGTGATTCCTCAGAGACAGACAACGAACCACCCTCGAAATCTAAGAA 3218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3061 TTCAACACTCAAGAGTGATTCCTCAGAGACAGACAACGAACCACCCTCGAAATCTAAGAA 3120
Query 3219 TGCCCAAAGAAACTCGTCCAAAAACTCCCTCAACCACAAACTAAGGACGATCTATGCTCA 3278
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3121 TGCCCAAAGAAACGCGTCCAAAAACTCCCTCAACCACAAACTAAGGACGATTTATGCTCA 3180
Query 3279 TGAGGACACTTCACTCGTGGACGACAAGCCTTCTAATGGTACAGCCCATATCAAAGAAGG 3338
||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 3181 TGAGGGCACTTCACTCATGGACGACAAGCCTTCAAATGATACAGCCCATATCAAAGAAGG 3240
Query 3339 TAATAATAATATATCTATGCCTGAGTTCAGGAGAAGTCGTTCAACACATCATGCAAGGTT 3398
||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 3241 TAATAATAATATATCCATGCCTGAGTTCAGAAGAAGTCGTTCAACGCATCATGCAAGGTT 3300
Query 3399 CATGGTACCATAGAAACATATCCAAGACTACAAAATATTTATCTCACACATCCGTCACAC 3458
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 3301 CATGGTACCATAGAAACATATCCAAGACTACAAAATATTTATCTCACAAATCCATCACAC 3360
Query 3459 ATCATATCCTTTGTACATTTTGAAGTTGGGTTTTCTGGATCTTTT-CATGTTCTTTTACT 3517
|||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| ||||
Sbjct 3361 ATCATATCCTTTGTACATTTTGAAGTTGGGGTTTCTGGA-CTTTTTCATGTCCTTATACT 3419
Query 3518 CCAGAGTTTGTGACTGAGATTGAACCGTTTATCATAAAGAACGAGTGTCCCATGTCGCAA 3577
|| |||| |||||||||||||||| ||||||| ||| |||||||||||||| |||| ||
Sbjct 3420 ACATAGTT-GTGACTGAGATTGAACTGTTTATCCTAA-GAACGAGTGTCCCACGTCGTAA 3477
Query 3578 AAGTTATATTTATTCTTCTTGAGGTTCTTC 3607
||| ||||||||||||||||||||||||||
Sbjct 3478 AAGATATATTTATTCTTCTTGAGGTTCTTC 3507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136246111340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5