BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44735.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897239 jgi|Araly1|897239|Al_scaffold_0005_1205                    377    3e-104


> Ahg897239 jgi|Araly1|897239|Al_scaffold_0005_1205
Length=252

 Score =  377 bits (204),  Expect = 3e-104
 Identities = 216/222 (97%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  59   GTTCTCTTCCTCATTTTATCAACAAGTTCATCTGCAATTCGAAGAGGAAAAGAAGATCAA  118
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  31   GTTCTCTTCCTCATTTTATCAACAAGCTCATCTGCAATTCGAAGAGGAAAAGAAGATCCA  90

Query  119  GAGATAAATCCATTAGTTTCAGCTACATCAGTGGAAGAGGACTCAGTTAATAAATTGATG  178
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  91   GAGATAAATCCATTAGTTTCAGCTACACCAGTGGAAGAGGACTCAGTTAATAAATTGATG  150

Query  179  GGGATGGAATATTGTGGAGAAGGAGATGAAGAATGTTTGAGGAGAAGGATGATGACGGAA  238
            || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  151  GGAATGGAATATTGTGGAGAAGGAGATGAAGAATGTTTGAAGAGAAGGATGATGACGGAA  210

Query  239  TCTCACTTAGACTATATTTACACACAGCACCATAAGCATTGA  280
            |||||||||||||| |||||||||||||||||||||||||||
Sbjct  211  TCTCACTTAGACTACATTTACACACAGCACCATAAGCATTGA  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5