BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44750.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484880 jgi|Araly1|484880|fgenesh2_kg.5__872__AT3G44750.1 1157 0.0
> Ahg484880 jgi|Araly1|484880|fgenesh2_kg.5__872__AT3G44750.1
Length=948
Score = 1157 bits (626), Expect = 0.0
Identities = 806/890 (91%), Gaps = 24/890 (3%)
Strand=Plus/Plus
Query 1 TCTTACATTTTCAGCTGCTCATAAACCCTAAAAATCCTCTCTTTTTCTCAACCTTGATTC 60
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 TCTTTCATTTTTAGCTGCTCATAAACCCTAAAAATCCTCTC--TTTCTCAACCTCGATTC 58
Query 61 TTAGCCATGGAGTTCTGGGGAATTGAAGTTAAATCAGGAAAGCCAGTTACAGTGACTCCT 120
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 59 TTAGCTATGGAGTTCTGGGGAATTGAAGTTAAACCAGGGAAGCCAGTTACAGTGACTCCT 118
Query 121 GAAGAAGGCATTCTTATCCACGTTTCTCAGGCATCGCTTGGAGAATGTAAAAACAAGAAG 180
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AAAGAAGGCACTCTTATCCACGTTTCTCAGGCATCGCTTGGAGAATGTAAAAACAAGAAG 178
Query 181 GGAGAGTTTGTGCCTTTACATGTAAAGGTTGGGAACCAGAACTTGGTTCTGGGAACTCTA 240
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 GGAGAATTTGTGCCTTTACATGTAAAGGTTGGTAACCAGAACTTGGTTCTGGGAACTCTA 238
Query 241 TCGACTGAGAACATCCCTCAGCTTTTCTGTGATTTGGTATTCGACAAGGAGTTTGAGCTT 300
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 TCAACTGAGAACATCCCTCAGCTTTTCTGTGATTTGGTATTCGAAAAGGAGTTTGAGCTT 298
Query 301 TCTCACACTTGGGGAAAAGGAAGTGTTTACTTTGTTGGATACAAAACTCCCAACATTGAG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 299 TCTCACACTTGGGGAAAAGGAAGTGTCTACTTTGTTGGATACAAAACTCCCAACA-TCAA 357
Query 361 CCA--CAAGGCTATTCTGAGGAAGAAGAGGAAGAAGAGGAAGAAGTTCCTGCTGGGAATG 418
| | | |||| ||||||||||||||||| | |||||||||||||| |||||||
Sbjct 358 ATATCCTTTG-AATTCAGAGGAAGAAGAGGAAGAGGTTGAAGAAGTTCCTGCAGGGAATG 416
Query 419 CTGCCAAGGCTGTAGCTAAACCAAAGGCTAAGCCTGCAGAAGTGAAGCCAGCTGTtgatg 478
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 CTGCTAAGGCTGTAGCAAAACCAAAGGCTAAGCCTGCAGAAGTGAAGCCAGCTGCTGAT- 475
Query 479 a-tgaagaggatgagtctgattctgacggaatggatgaagatgattctgatggtga-g-- 534
| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 476 ACTGAAGTGGATGACTCTGATTCCGACGAAATGGATGAAGATGATTCTGATGGTGATGAC 535
Query 535 gatTCTGAGGAAG-A-A-GAG---CCTACACCTAAGAAGCCTGCATCAAGCAAGAAGAGA 588
||||| ||||||| | | ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 536 GATTCAGAGGAAGAAGAGGAGACACCTACTCCTAAGAAGCCTGCATCAAGCAAGAAGAGA 595
Query 589 GCTAATGAAACTACCCCTAAAGCACCTGTGTCAGCAAAGAAGGCGAAAGTAGCAGTTACT 648
|| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 GCAAATGAGACTGCCCCTAAAGCACCTGTGTCATCAAAGAAGGCGAAAGTAGCAGTTACT 655
Query 649 CCTCAGAAAACAGATGAGAAGA-AGAAAGGGGGA-AAGGCTGCAAACCAGAGCCCAAAGT 706
||||||||||||| | | |||| | |||| ||| |||||| ||||||||||||||
Sbjct 656 CCTCAGAAAACAGGT-A-AAGATATAAAGACCCCCAAGACTGCAACCCAGAGCCCAAAGT 713
Query 707 CGGCCAGTCAAGTCTCATGTGGTTCATGCAAGAAGACTTTCAACTCAGGGAATGCACTTG 766
|||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||
Sbjct 714 CGGCCAGTCAAGTCTCCTGCGGTTCATGCAAAAAGACTTTCAACTCTGGGAATGCACTTG 773
Query 767 AGTCTCACAACAAGGCCAAGCACGCTGCTGCCAAGTGAAGTGGTTTCTTATTAGAGCTTG 826
|| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 774 AGGCTCACAACAAGGCCAAGCATTCTGCCGCCAAGTGAAGTGGTTTCTTA---GAGCTTA 830
Query 827 TGATTTCTATGGAATTTTGCCTGTAGTCTTTATGAAACCTTCGGATTTTC 876
|||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 831 TGATATCTTTGGAATTTTGCCTCTAGTCTTTATGAAACCTTCGGATTTTC 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5