BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44755.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896248 jgi|Araly1|896248|Al_scaffold_0005_214                    93.5    1e-18


> Ahg896248 jgi|Araly1|896248|Al_scaffold_0005_214
Length=462

 Score = 93.5 bits (50),  Expect = 1e-18
 Identities = 87/104 (84%), Gaps = 5/104 (5%)
 Strand=Plus/Plus

Query  106  GCGGCAGGACCTTTCGCTCGGCCTGAGAAACCGGTGGTGCATCGCCGTGTTCTTCAG-TC  164
            ||||| ||||| ||| ||||  ||||||||||||||||||||||||||||| ||||| | 
Sbjct  120  GCGGCGGGACCATTCTCTCGATCTGAGAAACCGGTGGTGCATCGCCGTGTTTTTCAGAT-  178

Query  165  ATCGTCGTTGTTTCTTTGG-GGTGCGGACTCTCCGGA-TTGTCT  206
            |||| ||||||| |||| | |||  || ||||| ||| ||||||
Sbjct  179  ATCGCCGTTGTTCCTTTTGTGGTTTGGGCTCTC-GGACTTGTCT  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5