BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44760.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937111 jgi|Araly1|937111|scaffold_501302.1 586 1e-166
Ahg937110 jgi|Araly1|937110|scaffold_501301.1 104 1e-21
> Ahg937111 jgi|Araly1|937111|scaffold_501302.1
Length=483
Score = 586 bits (317), Expect = 1e-166
Identities = 437/493 (89%), Gaps = 15/493 (3%)
Strand=Plus/Plus
Query 304 TCTTTCTCTTCTGTTACTTAACGATGAAGAAATTGGGATTGACTTGCAGATGGATAGCTT 363
|||||| ||||||| | ||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 TCTTTCACTTCTGTCA-AAAACGATGAAGAAAACGGGAATGACTTGCAGATGGATAGCTT 59
Query 364 CGGATGCAGTTTTCAACAAACTCTCGCTCAAATTCAACGTTCTCGTTGTTGTAACGCTGA 423
||||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||||
Sbjct 60 CGGATTCAGTTTTCAACAAATTATCGATCAAATTCAACGTTCTCGTTGTTGCAACGCTGA 119
Query 424 TGT-TGCTGAGGAT--C-TGGGGAGAATCTAACTTCATCGATTTCGTTAACTTTGAGATA 479
| | |||||||||| | ||| ||||| | || |||||||||| ||||||||||||
Sbjct 120 T-TCTGCTGAGGATGACATGGAGAGAA--T---TT-ATCGATTTCGAAAACTTTGAGATA 172
Query 480 TCGAAAGTAACTTTC-CGTGAGGCGATGGGGCTTTTGACTCTGATGATGGCTTATTTTTA 538
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 173 TCGAAAGTAAC-TTCTCGTGAGGCGATGGGGCTTTTGACTCTGATGATGGCTTCTTTTTA 231
Query 539 CTACTTGGGAAGTTTACGCTGGATTGTATCTGAGTTGCTTGAGCTTAACGATCCATTGGT 598
||||| ||||||||| || |||||| ||||||| ||||| || ||||||||||||||||
Sbjct 232 CTACTCGGGAAGTTTTCGATGGATTTTATCTGACTTGCTCAAGTTTAACGATCCATTGGT 291
Query 599 AAGGATTGAAAAAAGAGTTGGCTATGATATATGGTTTCTTGACTCTGGCCTTTTACCTCG 658
||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 292 AAGGATTGACAAA-GAGTTGGCTATGTTATATGGTTTCTTGACTCTGGCCTTTTACCTCA 350
Query 659 TGAACCTGTTTGGATTCTTCTGGGGAATTTTATGGCTACTAGTTTCTCCTCCGAGTATTC 718
|||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 351 TGAACCTGTTCGGATTCTTCTGGGGACTTTTATGGCTACCAGTTTCTCCTCCGAGTCTTC 410
Query 719 TTTTGGTTATTCGATTCGCCAAGTCCATTACCTTTTGAGAATCTCAAGATTAGATTCCTT 778
|||||||| |||||||||||||||||| | | || ||||| |||||||||| || |||
Sbjct 411 TTTTGGTTCTTCGATTCGCCAAGTCCAGAAACGTTAAAGAATTTCAAGATTAGGTTGCTT 470
Query 779 GGAGATGAAGATT 791
|||||||||||||
Sbjct 471 GGAGATGAAGATT 483
> Ahg937110 jgi|Araly1|937110|scaffold_501301.1
Length=441
Score = 104 bits (56), Expect = 1e-21
Identities = 274/374 (73%), Gaps = 36/374 (10%)
Strand=Plus/Plus
Query 356 GATAGCTTCGGATGCAGTTTTCAACAAACTCTCGCTCAAATTCAACGTTCTCGTTGTTGT 415
|||||| || || |||||||||||||||||| | ||| ||||||| ||||| | |||
Sbjct 53 GATAGCATCAGACGCAGTTTTCAACAAACTCGCAATCATATTCAACATTCTCCTACTTGG 112
Query 416 AACGCTGATG-TTGCTGAGGAT-CT--GG---GGAGAATCTA-ACTTCATCGATTTCGTT 467
|||||| || | ||| |||| | || | |||| | | | ||||||||||| |
Sbjct 113 AACGCTCTTGCCT-CTGTGGATATTACGGCCAGAAGAAAC-AGAGTTCATCGATTTAGAA 170
Query 468 AACTTTGAGATATCGAAAGTAACTTTCCGTG-AGGCGATGGGGCTTTTGACTCTGATGAT 526
||||||||||||||||||||||||||||||| | |||||||| ||||| || |||| ||
Sbjct 171 AACTTTGAGATATCGAAAGTAACTTTCCGTGGAA-CGATGGGGTTTTTGGCTTTGAT-AT 228
Query 527 -GGCTTATTTTTA-CTACTTGGGAA-GT-TTACGCTGGATTGTATCTG--A-GTT-G-CT 577
||| | || ||| | ||| | || || || | ||| |||||||| | ||| | |
Sbjct 229 TGGCATCTTGTTATC-ACTCGA-AATGTATT-CACTGCTTTGTATCTTTCATGTTCGACG 285
Query 578 -TGAGC-TTAA--CGATC---CATTGGTAAGGA-TTGAAAAAAGAGTTGGCTATGATATA 629
|| | || |||| || | ||||| || | | | ||| |||||||| | ||
Sbjct 286 CTGCGGGTTTGTTCGATGATACAACCGAAAGGACTT-ACATA-GAGATGGCTATGTTTTA 343
Query 630 TGGTTTCTTGACTCTGGCCTTTTAC-CTCGTGAACCTGTTTGGATTCTTCTGGGGAATTT 688
||||||||||||| ||||||||| || |||| ||||| || ||| |||||||| |||
Sbjct 344 TGGTTTCTTGACTTTGGCCTTTTTTTCTAATGAATCTGTTCGGTTTCGTCTGGGGATTTT 403
Query 689 TATGGCTACTAGTT 702
| | |||||||||
Sbjct 404 TGTCTCTACTAGTT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5