BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44770.1
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897242 jgi|Araly1|897242|Al_scaffold_0005_1208 963 0.0
Ahg347555 jgi|Araly1|347555|fgenesh1_pg.C_scaffold_5000947 545 3e-154
Ahg897250 jgi|Araly1|897250|Al_scaffold_0005_1216 357 1e-97
Ahg897248 jgi|Araly1|897248|Al_scaffold_0005_1214 228 1e-58
> Ahg897242 jgi|Araly1|897242|Al_scaffold_0005_1208
Length=966
Score = 963 bits (521), Expect = 0.0
Identities = 594/630 (94%), Gaps = 1/630 (0%)
Strand=Plus/Plus
Query 445 TCT-GGTTTCGATATTGATGGTAAAGTTTGTATCCCAGCATGTGGAATCTCACCAGTCTT 503
||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 192 TCTGGGTTTCGATATTGATGGTAATGTTCGTATCCCAGCATGTGGAATCTCACCAGTCTT 251
Query 504 TCTAGGTGCTAATAAAAACCCGCGTAGCGAAGTCGCTCTTTATGGCCGTTTGGGAGTTCA 563
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 252 TCTAGGTGCTAATGAAAACCCGCGTAGCGAAATCGCTCTTTATGGCCGTTTGGGAGTTCA 311
Query 564 TTGCTTCAACATTGACAAGGAGAGGAAGTTTCAGTATATGCGCATACCTAAATACAATGT 623
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 312 TTGCTTCAACATTGACAAGGAGAGGAAGTTGAAGTATATGCGCATACCTAAATACAATAT 371
Query 624 TCAATATCCTGAAGCTATGTCTTTCCATATAACCGTGGAGGTGAATGATCTTGCTGATAA 683
||||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 372 TCAATTTCCTAAAGCTATGTCTTTCTATATAACCGTGGAGGTGAAAGATCTTGCTGATAA 431
Query 684 TTCAGCTCACACTTTACAGAACTTGGTCACAAGATCTTTTTCTAGGAACGGAGAGGACTT 743
|||||||||||||||||||| |||||||| ||||||||| |||||||| |||||| ||||
Sbjct 432 TTCAGCTCACACTTTACAGACCTTGGTCATAAGATCTTTCTCTAGGAATGGAGAGCACTT 491
Query 744 AAGAGTCTCTACTGGAATTTGCAGAATCAAACCCAAAACACCTGAAAGAGAGATCTGTCT 803
|||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 492 AAGAGTCTCTACTGGAATTTGCAGAATCAAACCCGAAACACCTGAAGGAGATATCTGTCT 551
Query 804 TGTGGATGAGGAAGCAATAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAA 863
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TGTGGATGAGAAAGCAATAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAA 611
Query 864 ACTAGGGGCTGACGATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGC 923
|| ||| |||| | ||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 612 ACAAGGAGCTGTCAATGATAAGCTGAGATTCTATGAGGTTCAGGAGCAGGACATATGTGC 671
Query 924 AAATGATTGGTTACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGA 983
|||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 672 AAATGATTGGCTACGTCTATATACTGAATTTGCACTTTTTTCCTTCTGGAGATATAATGA 731
Query 984 GGACGGATTTGAGTCTTGTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGA 1043
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 732 GGACGGATTTGAGTCTTGTTTACCTGTGGAGATCAAGAAGATAATTGTGGAGACTTGTGA 791
Query 1044 CACTCACAGAGAGCCGCGTATGAAGCTGAA 1073
||||| |||||||||||| ||||||||||
Sbjct 792 AACTCATAGAGAGCCGCGTCTGAAGCTGAA 821
Score = 278 bits (150), Expect = 1e-73
Identities = 168/177 (95%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 229 AGCTGTTGGATTGTGGAAAATTATCTGACGAAACCTGCCACTCGATTTTGTGTGGATTGG 288
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 20 AGCTGTTGGATAGTGGAAAATTATCAGACGAAACCTGCCACTCGATTTTGTGTGGATTGA 79
Query 289 GTCAACATGTCGATGCTTTACATTTATCCAAAACCGAAGAAGAAGTCGACGGATGGACAT 348
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 80 GTAAACATGTCGATGCTTTTCATTTATCCAAAACCGAAGAAGAAGTCGATGGATGGACAT 139
Query 349 CTGAGGAAGATGAAGAACTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 405
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 140 CTGAGGAAGATGAACAACTTGACGAAGAATACTGTCGCCAAGTTACCCAGTCTCTGG 196
> Ahg347555 jgi|Araly1|347555|fgenesh1_pg.C_scaffold_5000947
Length=918
Score = 545 bits (295), Expect = 3e-154
Identities = 347/373 (93%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 701 AGAACTTGGTCACAAGATCTTTTTCTAGGAACGGAGAGGACTTAAGAGTCTCTACTGGAA 760
||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 401 AGACCTTGGTCACAAGATCTTTCTCTAGGAATGGAGAGCACTTAAGAGTCTCTACTGGAA 460
Query 761 TTTGCAGAATCAAACCCAAAACACCTGAAAGAGAGATCTGTCTTGTGGATGAGGAAGCAA 820
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 461 TTTGCAGAATCAAACCCGAAACACCTGAAGGAGATATCTGTCTTGTGGATGAGGAAGCAA 520
Query 821 TAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAAACTAGGGGCTGACGATG 880
||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | |||
Sbjct 521 TAGATAAGTTTTACAAAGGTGTTATGCCCAACTTTGTGTCCAAAGAAGGAGCTGTCAATG 580
Query 881 ATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGGTTACGTC 940
||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 581 ATAAGTTGAGATTCTACGAGGTTCAGGAGCAGGACATATGTGCAAATGATTGGCTACGTC 640
Query 941 TATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGAGTCTT 1000
||||||||||||| |||||||| |||| |||||||||||||||||| || ||||||||||
Sbjct 641 TATATACTGAATTTGCACTTTTTTCCTTCTGGAGATATAATGAGGATGGGTTTGAGTCTT 700
Query 1001 GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAGAGCCGC 1060
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 701 GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAGACTTGTGAAACTCATAGAGAGCCGC 760
Query 1061 GTATGAAGCTGAA 1073
|| ||||||||||
Sbjct 761 GTCTGAAGCTGAA 773
Score = 305 bits (165), Expect = 5e-82
Identities = 203/221 (92%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 445 TCT-GGTTTCGATATTGATGGTAAAGTTTGTATCCCAGCATGTGGAATCTCACCAGTCTT 503
||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 183 TCTGGGTTTCGATATTGATGGTAATGTTCGTATCCCATCATGTGGAATCTCACCAGTCTT 242
Query 504 TCTAGGTGCTAATAAAAACCCGCGTAGCGAAGTC-GCTCTTTATGGCCGTTTGGGAGTTC 562
||||||||||||| ||| ||||| ||||||| || | |||||||||||||||||||||||
Sbjct 243 TCTAGGTGCTAATGAAAGCCCGCATAGCGAAATCAG-TCTTTATGGCCGTTTGGGAGTTC 301
Query 563 ATTGCTTCAACATTGACAAGGAGAGGAAGTTTCAGTATATGCGCATACCTAAATACAATG 622
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 302 ATTGCTTCAATATTGACAAGGAGGGGAAGTTGAAGTATATGCGCATACCTAAATACAATA 361
Query 623 TTCAATATCCTGAAGCTATGTCTTTCCATATAACCGTGGAG 663
|||||| |||| |||||||||||||| ||||||||||||||
Sbjct 362 TTCAATTTCCTAAAGCTATGTCTTTCTATATAACCGTGGAG 402
Score = 239 bits (129), Expect = 5e-62
Identities = 153/165 (93%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 241 GTGGAAAATTATCTGACGAAACCTGCCACTCGATTTTGTGTGGATTGGGTCAACATGTCG 300
|||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 23 GTGGGAAATTATCAGACGAAACCTGCCACTCGATTTTGTGTGGATTAGGTAAACATGTCG 82
Query 301 ATGCTTTACATTTATCCAAAACCGAAGAAGAAGTCGACGGATGGACATCTGAGGAAGATG 360
||||||| ||||||||||||||| |||||||||| || |||||||| || ||||||||||
Sbjct 83 ATGCTTTTCATTTATCCAAAACCAAAGAAGAAGTTGATGGATGGACTTCGGAGGAAGATG 142
Query 361 AAGAACTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 405
|| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 143 AACAGCTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 187
> Ahg897250 jgi|Araly1|897250|Al_scaffold_0005_1216
Length=984
Score = 357 bits (193), Expect = 1e-97
Identities = 445/560 (79%), Gaps = 44/560 (8%)
Strand=Plus/Plus
Query 539 CTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAG-AGGAAGTTT-C- 595
|||||||||| || |||||||||||||| |||||| |||| |||| | ||||| ||| |
Sbjct 281 CTCTTTATGGTCGCTTGGGAGTTCATTGTTTCAACTTTGAGAAGG-GCAGGAA-TTTACT 338
Query 596 AGTATATGCGCATACCTAAATACAATGTTCA-ATATCCTGAAGCTATGTCTTTCCATATA 654
|| |||||| ||||||||||||||| || | | | | || ||| | ||| | |||||
Sbjct 339 GGT-TATGCGAATACCTAAATACAATATTGAGCT-TGTTCAAACTAGGGCTTACTATATA 396
Query 655 ACCGTGGAGGT-GAATGATCTTGCTGATAA-T--TCAGCTCACACTTTACAGAACTTGGT 710
|| ||||||| ||| |||||||||||||| | || | ||||| ||| |||| ||||||
Sbjct 397 ACAATGGAGGTGGAA-GATCTTGCTGATAATTCGTCGGTTCACATTTTTCAGACCTTGGT 455
Query 711 CACAAGATCTTTTTCTAGGAACGGAGA-GGA--CTTAAG-AGTCTCTACTGGAATTTGCA 766
||||||| |||| | |||||| | | | | ||| || ||||| ||| ||||| ||||
Sbjct 456 GACAAGATGTTTTCCCAGGAAC--A-ACGCATCCTT-AGTAGTCTTTACCGGAATCTGCA 511
Query 767 GAATCAAACCC-A-A-AACACCTGAAAGAGAGAT-CTG-T-CT-TG-TGGATGAGGAAGC 818
|| | |||||| | | | || || ||| ||||| ||| | || | |||||||| ||||
Sbjct 512 GACTTAAACCCGAGATACCAGGTG-AAG-GAGATGCTGATGCTCGGTTGGATGAGAAAGC 569
Query 819 AATAGATAAGTTTTACAGAGGTGT-TATGCCCAACTTTGTGTCC-AAACTAGGGGCTGAC 876
|||| || ||||||||| ||| | |||||| ||||| ||||| | || | ||
Sbjct 570 AATATATGAGTTTTACAAAGG-CTCTATGCCTGACTTTTTGTCCGAGAC-A-AAACT--T 624
Query 877 GATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGG-TT 935
|||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 625 GATGATAAGCTGAGATTCTACGAGGTTCAGGAGCAGGATATATGTGAAAATGATTGGCTT 684
Query 936 ACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGA 995
||||||||||| ||||| |||||||||| || ||| | | ||||||||| |||||| |
Sbjct 685 -CGTCTATATACCGAATTTGCACTTTTCTGCTTTTGGTGGTTTAATGAGGATGGATTTAA 743
Query 996 GTCTT-GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAG 1054
|| || |||| |||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 744 GT-TTAGTTTGCCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGAAACTGATAGAG 802
Query 1055 AGCCGCGT-ATGAAGCTGAA 1073
||||| || || ||||||||
Sbjct 803 AGCCGTGTCAT-AAGCTGAA 821
> Ahg897248 jgi|Araly1|897248|Al_scaffold_0005_1214
Length=693
Score = 228 bits (123), Expect = 1e-58
Identities = 300/381 (79%), Gaps = 29/381 (8%)
Strand=Plus/Plus
Query 538 GCTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAGAGGAAGTTT-CA 596
||||||||||||||||||||||||||||| |||||| |||| |||| |||||| | | |
Sbjct 292 GCTCTTTATGGCCGTTTGGGAGTTCATTGTTTCAACTTTGAGAAGGGGAGGAA-TCTGCG 350
Query 597 GTATATGCGCATACCTAAATACAATGTTC-AATATCC-TGAAGCT-ATGTCTTTC-CATA 652
|| ||| |||||||| ||||||||| | | || |||| | || || | |||| | | ||
Sbjct 351 GTTTATCCGCATACCCAAATACAAT-TCCCAA-ATCCATCAAACTGAC-TCTTACTC-TA 406
Query 653 TAACCGTGGAGGTGAATGATCTTGCTGATAATTCAGC-TCACACTTTACAGAACTTGGTC 711
|||||||||||||| | |||||||| ||| ||| || ||||| ||| |||| |||||||
Sbjct 407 TAACCGTGGAGGTGGAGGATCTTGCAGATTGTTC-GCCTCACATTTTTCAGACCTTGGTC 465
Query 712 ACAAGATCTTTTTCT-AGGAACGGAGAGGACTTAAGAGTCTCTACTGGAATTTGCAGAAT 770
||||| | | |||| | ||| || |||| ||||||||||| ||||||||| |||||| |
Sbjct 466 ACAAGGT-TGTTTCCCAAGAATGGTGAGGGCTTAAGAGTCTTTACTGGAATCTGCAGACT 524
Query 771 CAAACCCAAAACACCTG--AAAGAGAGAT-C-TGT-CT-TGT-GGATGAGGAAGCAATAG 823
|||||| ||||| | |||| ||||| | | | || | | |||||||||||||||||
Sbjct 525 TAAACCCGCGACACCAGGTAAAG-GAGATGCCTATGCTATATTGGATGAGGAAGCAATAG 583
Query 824 ATAAGTTTT-ACAGAGGTGTTATGCCCAACTTTGTGTCCAAA-CTAGGGGCTGACGATGA 881
|| ||||| ||||||| | ||||| |||||||||| || | | | |||| |||||
Sbjct 584 ATG-GTTTTTACAGAGGCGATATGCTGGACTTTGTGTCGGAAGCAATAG-CTGATGATGA 641
Query 882 TAAGCTGAGGTTCTACGAGGT 902
|||||| |||||||||||
Sbjct 642 ---GCTGAGATTCTACGAGGT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56830645540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5