BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44780.1
Length=647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897251 jgi|Araly1|897251|Al_scaffold_0005_1217 776 0.0
> Ahg897251 jgi|Araly1|897251|Al_scaffold_0005_1217
Length=606
Score = 776 bits (420), Expect = 0.0
Identities = 548/609 (90%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGAACTTCCTATTAAAGTTGAGATTCTATACGAATCCGATCAACTCTTTTCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAACTTCCTATTAAAGTTGAGATTCTATACGAATCCGATCAACTCTTTTCAGAA 60
Query 61 CTAAAGAAGATTGGACAGTACATCCCACTTTCAACATTTCTCGAGATTCTAAAACTAAAA 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CTAAAGAAGATTGGACAATACATCCCACTTTCAACATTTCTCGAGATTCTAAAACTTGAA 120
Query 121 CTTGACGGAAAATTTGAGATACTCAGAGTGAAGAACAAAGTAGTGAAACCTAAAGTAGAG 180
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 121 CCTGATGGAAAATTTGAGATACTCAGAGTGAAGAAAAAAGTAGTGAAACCTAAGGTAGAA 180
Query 181 GGTGAAACTATTGATGTTGTCTACACTCGCTTGAGAAAACACC--AG--GTATTGCCTGA 236
||||||| || | ||| ||| ||| | ||| | || || ||| |||| ||
Sbjct 181 GGTGAAAATA-T--TGTAGTC-GCACAGGGAAGAGGCGATTCCAGAGAAGTAGTGCCCGA 236
Query 237 TGAAACAAAGAAGGCGGACTGGGGACCTTTTAATGGTCCGATGAAAGATCAGGGAGAACA 296
|||||| ||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 237 TGAAACGAAGAAGGTGGACTGGGGACCTTTTTATGGTCCGGTGAAAGATCAGGGAGAACA 296
Query 297 CGATATATGTTGGGCGATCGTGACGGCTGAATTAGTCACTGCGATACGGTGGATCAAACA 356
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 297 CGATATATGTTGGGCCATTGTGACGGCTGAATTAGTCACTGCAATACGGTGGATCAAACA 356
Query 357 ACATGAAAACGGGACTGAGTACTTGTATCAAGAGCTTGTAGATTTTGTGTTTCCCGAGAA 416
|| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 357 ACGTGAAAACGGGACTGAGTACTCGTATCAAGAGCTTGTAGATTTTGTGTTTCCGGAGAA 416
Query 417 AGGAAAGCTGCaaaaaaaTAAGGCACATTTCTGTTATAAGCTCAGCATCGTAAAAGCTTT 476
|||||||| | ||| |||||||| ||||||||||||| |||||||||| ||||||| ||
Sbjct 417 GGGAAAGCTTCGAAACAATAAGGCGCATTTCTGTTATAGGCTCAGCATCTTAAAAGCCTT 476
Query 477 GAGGTATGTTGTTCGACAAGGTATTCAAAAAGCACTAGATCGGCCTTTCGATGGGTGCAA 536
|||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 477 GAGGTATGTTGTTCAACAAGGTATTCAAAAAGCAGTTGACCGGCCTTTCGATGGGTGCAA 536
Query 537 AGAGTTTCCACCGCCTCGGGTTTTATCGAATTCCCACCTAGGAGGGTATATTTGTGCCGC 596
|||||||||||| |||||||||||||| ||| |||||||||| | |||||| |||||||
Sbjct 537 AGAGTTTCCACCACCTCGGGTTTTATCCAATCCCCACCTAGG-G--TATATTGGTGCCGC 593
Query 597 CAAGTTGAT 605
||||| |||
Sbjct 594 CAAGTCGAT 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23712454374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5