BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G44790.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg937123 jgi|Araly1|937123|scaffold_501314.1 1133 0.0 Ahg897256 jgi|Araly1|897256|Al_scaffold_0005_1222 979 0.0 Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 787 0.0 Ahg930958 jgi|Araly1|930958|scaffold_303415.1 651 0.0 Ahg937127 jgi|Araly1|937127|scaffold_501318.1 390 8e-108 Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 95.3 7e-19 Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 58.4 1e-07 Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 54.7 1e-06 > Ahg937123 jgi|Araly1|937123|scaffold_501314.1 Length=1048 Score = 1133 bits (613), Expect = 0.0 Identities = 870/989 (88%), Gaps = 38/989 (4%) Strand=Plus/Plus Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAA-GTACATTAATTCT 69 |||| ||||||||||||||||||||||||||||||||||||||||| | | ||| ||||| Sbjct 43 AGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGGCA-ATTGATTCT 101 Query 70 GATAAATTCGTTATCGGTGGCTGCAAAT-G-G---T-T----TCT--TAAGGGATATCAG 117 ||| |||| || ||||||||||||||| | | | | ||| ||||||||||||| Sbjct 102 GATGAATTTGTGGTCGGTGGCTGCAAATGGTGTCTTGTGGCCTCTCCTAAGGGATATCAG 161 Query 118 AATGCTAATTATTTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCC------T 171 ||||||||||||||||||||||| ||| |||||||||||| |||||| ||||| | Sbjct 162 AATGCTAATTATTTGTCTCTGTTCCTGGTGGTTGCTACTTTAAAAACTTTGCCTTGTGGT 221 Query 172 TGTGGATGGAGAAGATACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAA 231 ||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| || Sbjct 222 TGTGGATGGAGAAGACACATAAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGA-CAA 280 Query 232 -CTTTCCCAACAACGAGAAACGGAA-ACATGGTTTGACCAA-AACGTTGTTCTCTCTGGG 288 || |||| || | |||||| ||| | |||||| || || | || | | ||| |||| Sbjct 281 CCTCTCCCGACGAGGAGAAAAAGAAGA-ATGGTTAGATGAATACCG-TACTATCTGTGGG 338 Query 289 AATCGACACATGATTTC-CCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGA 346 ||| | | ||| ||| |||| |||||||||||| | ||| |||||||||||||||||| Sbjct 339 TATCAAAAAATG-CTTCTCCTTTCCAAACTTAATGCCAAAG-AAGGTGGATTTCTTGTGA 396 Query 347 ACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 406 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 397 ACAATGAAGTCAAGATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 456 Query 407 TTTCAGAGGGA-TCTCAAGAAGTAACTCAACCTCTGAAAAGGA-TAAGGCTAAACGATGA 464 |||| || ||| |||||||| ||| |||||||||||||||||| ||| ||||| |||| Sbjct 457 TTTCTGA-GGATTCTCAAGAGGTAGCTCAACCTCTGAAAAGGATTAA-GCTAATTGATGG 514 Query 465 TGGTGTTTCCGTAAAAC-AAAGCATTGATGTCAATGGGTTTCAGGTTCTTCCTTCACAGG 523 ||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 515 TGGTGTTTCGGT-AAACGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGG 573 Query 524 TGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACTAGAGTTCCGAGCAA 583 |||||| ||||||||||| || |||||||||||| |||||||| ||||||| |||| || Sbjct 574 CGGAATCCGTGAAACGTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGAGTAA 633 Query 584 AGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAATCGATACACTGT 643 |||||||||| ||||||||| ||| || ||| ||||||||| | ||||||| || ||| Sbjct 634 TGAACCAACATATGAGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGT 693 Query 644 GCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGAAAGCACTAAGAT 703 ||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||| Sbjct 694 GCCAGTCACTGAAAGACATTTCCATTCATGAACTGGGCCAAGCAGAGAAAGCACTAAGAT 753 Query 704 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGGAGGAAGTGAAGG 763 ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 754 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGGAGGAAGTAAAGG 813 Query 764 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAGAGGAAGAGCTGA 823 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 814 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGA 873 Query 824 AGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAAAGAGAAGCAAAAGT 883 || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 874 AGGTCTTCAAGCAGAATTGCTCTGACATAGAAGCTCAACTGGAGAAAGAAAAGCAAAAGT 933 Query 884 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTGGCCGCTGCCAGA 942 ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| Sbjct 934 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGAAAAAGGTA-TTGGCCGCTGCCAGA 992 Query 943 GCTCCTCCTCTAACGTTGGATGATGTTGT 971 ||||||| ||||||||||||||||||||| Sbjct 993 GCTCCTCTTCTAACGTTGGATGATGTTGT 1021 > Ahg897256 jgi|Araly1|897256|Al_scaffold_0005_1222 Length=1044 Score = 979 bits (530), Expect = 0.0 Identities = 853/1001 (85%), Gaps = 53/1001 (5%) Strand=Plus/Plus Query 14 AGTTCACTTGGGTGATTAAGAATTTCTCATC---TTTGCAATCTAAG-TACATTAATTCT 69 ||||||||||| |||||||||| |||||||| |||||||||| || || ||| ||||| Sbjct 11 AGTTCACTTGGATGATTAAGAACTTCTCATCTAATTTGCAATCTGAGTTA-ATTGATTCT 69 Query 70 GATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGGGATATCAGAATGCTAATTAT 129 ||| |||| || ||||||||||||||||||||||||| |||| | || |||| ||||||| Sbjct 70 GATGAATTTGTGATCGGTGGCTGCAAATGGTTTCTTATGGGAGAACAAAATGATAATTAT 129 Query 130 TTGTCTCTGTTTCTGATGGTTGCT-A-CTTCAAAAACATTGCCTTGTGGATGGAGAAGAT 187 || |||||||||||| |||||||| | ||| |||| ||||||||||||||||||||| Sbjct 130 TTTTCTCTGTTTCTGGTGGTTGCTGATTTTC-AAAA-TTTGCCTTGTGGATGGAGAAGAC 187 Query 188 ACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAACTTTCC---CA---A- 240 || || ||||||| |||||||||||||||||| |||||||| |||| ||| || | Sbjct 188 ACTCAAGATTTCGTCTAACTGTTGTAAATCAAATTTCCGATAAACTCTCCTTGCATCGAG 247 Query 241 ------CAACGAGAAACGGAAAC-ATGGTTTGACCAAAACGTTGTTCTCTC-TGGGAATC 292 | || |||||| | ||| |||||| || ||||| ||| | | || |||| || Sbjct 248 TTTTGTCTAC-AGAAACAG-AACGATGGTTCGATCAAAAAGTTCCTGT-TCATGGGTAT- 303 Query 293 G-ACACATGATTTCCCTTACCAAACTTAATGCGAAG-AAAGGTGGATTTCTTGTGAACAA 350 | | | |||||||| ||| ||||||| |||| || ||||||||||||||||||||||| Sbjct 304 GCAGAAATGATTTCTCTTGCCAAACTAAATG-TCAGAAAAGGTGGATTTCTTGTGAACAA 362 Query 351 TGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTC 410 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 363 TGAAGTCAAGATTGTTGTTGAGGTTGATGTTCTTCAAGTTACTGGCAAATTAGATGTTTC 422 Query 411 AGAGGGATCTCAAGAAGTA-ACTCAACCTCTGAAAAGGATAAGGCTAAACGATGATGGTG 469 |||| ||||| || || | || ||| || |||||||||||| |||||| | | | |||| Sbjct 423 TGAGGAATCTCTAG-AGGATACACAAACTTTGAAAAGGATAAAGCTAAAAGGTTACGGTG 481 Query 470 T--T-TC-CGT-A-----A-AA-CAAA--GCAT---T-GATGTCAATGGGTTTCAGGTTC 511 | | || || | | || ||| ||| | ||||||||||||||| |||| Sbjct 482 TGGTGTCTAGTCATTTGCATAAGGAAACTTCATCAGTCAATGTCAATGGGTTTCTTGTTC 541 Query 512 TTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACTAG 571 ||||||| ||||||||||| ||||||||||| || |||||||||||| |||||||| ||| Sbjct 542 TTCCTTCTCAGGTGGAATCTGTGAAACGTATATTCGAAAGACACCCAGACATGGCAATAG 601 Query 572 AGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAA 631 ||||||||||||||||| ||||| ||||||||| || || || ||||||||| | ||| Sbjct 602 AGTTCCGAGCAAAGAACAAACATATGAGGACATTATCCATCAACCTCCTCCTCAACATAA 661 Query 632 TCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGA 691 |||| || ||||||||||| |||||||| |||||||||||||||| |||| ||||||| Sbjct 662 TCGAGACTTTGTGCCAGTCATTGCAAGACTTTTCCATTGATGACCTTTGCCAAGCAGAGA 721 Query 692 AAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGG 751 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 722 AAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGG 781 Query 752 AGGAAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAG 811 ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 782 AGGAAGTAAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGACTCGGGTGCAAGAACTAG 841 Query 812 AGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAAAG 871 ||||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 842 AGGAAGACCTGAAGGTCTTCAAGCAGAATTGTTCTGACATAGAAGCTCAACTGGAGAAAG 901 Query 872 AGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTG 930 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 902 AGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGACAAAGGTA-TTG 960 Query 931 GCCGCTGCCAGAGCTCCTCCTCTAACGTTGGATGATGTTGT 971 |||||||||| |||||||||||||||||||||||||||||| Sbjct 961 GCCGCTGCCAAAGCTCCTCCTCTAACGTTGGATGATGTTGT 1001 > Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 Length=1629 Score = 787 bits (426), Expect = 0.0 Identities = 752/903 (83%), Gaps = 47/903 (5%) Strand=Plus/Plus Query 1 ATGGGGTATGAGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGTAC 60 |||||| ||||||| ||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 1 ATGGGGAATGAGAAATTCACTTGGGTGATTAAGAATTTCTGTTCTTTGCAATCTGAGTCC 60 Query 61 ATTAATTCTGATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGGGATAT--C--A 116 |||||||||||| |||||| ||||||||||||||||||| |||| || ||| | | Sbjct 61 ATTAATTCTGATGTATTCGTGATCGGTGGCTGCAAATGGTATCTTGCGGCTTATCCCAAA 120 Query 117 -G---A-AT---GCTAATTATTTGTCTCTGTTTCTGATGGTTGCT-ACTTCAAAAACATT 167 | | || ||| ||||||||| ||| |||||| |||| ||| | || ||||| || Sbjct 121 GGAAAATATAAGGCTGATTATTTGTTTCTATTTCTGGTGGTAGCTGA-TTTTAAAACTTT 179 Query 168 GCCTTGTGGATGGAGAAGATACACACGATTTCGCCTAACTGTT-GTAAATCAACTTTCCG 226 ||| | |||||||| |||| ||| | ||| |||||||||| || ||||||||| | ||| Sbjct 180 GCCATATGGATGGAAAAGACACATAAGATATCGCCTAACT-TTCGTAAATCAAATCTCCT 238 Query 227 ATGAACTTTCCCAACAACGA-GAAACGGAA-ACATGGTTTGACCAAA-A-CGTTGTTCTC 282 ||| ||| |||| || | || |||| ||| | |||| | | ||| | || | |||| Sbjct 239 ATGGACTCTCCCTACTAGGAGGAAA-AGAAGA-ATGGATAG-GTAAATACCG-TCCTCTC 294 Query 283 T-CTGGGAATCGACACATGATTTC-CCTTACCAAACTTAATG-CGAAGAAA-GGTGGATT 338 | | ||| ||| | | |||| ||| |||||||||||||||| | || ||| |||||||| Sbjct 295 TGC-GGGTATCAAAAAATGA-TTCTTCTTACCAAACTTAATGAC-AA-AAAGGGTGGATT 350 Query 339 TCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAA 398 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 351 TCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTTCTTCAAGTGATTGGCAA 410 Query 399 ATTAGATGTTTCAGAGGGATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGCTAAA 458 |||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||| Sbjct 411 ATTAGATGTTTCTGAGGAATCTCAAGAGGTAACTCAACCTCTGAAAAGGATAAAGCTAAA 470 Query 459 CGATGATGGTGTTTCCGTAAAA-CAA-AGCATTGATGTCAATGGGTTTCAGGTTCTTCCT 516 | ||||||||| |||| || || | ||||||||||| ||||| ||||||||| Sbjct 471 TGGTGATGGTGTG---GTAACTTCATCAGTA--GATGTCAATGGCTTTCAAGTTCTTCCT 525 Query 517 TCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCA-AACATGGCACTAGAGTT 575 ||| ||| |||||| |||||||| || || |||| ||||||| || ||||||||| |||| Sbjct 526 TCAGAGGCGGAATCTGTGAAACGCATATTCGAAAAACACCCAGAA-ATGGCACTAAAGTT 584 Query 576 CCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAATCGA 635 ||| ||||||||||||||| ||||||||||||| || |||||| |||||| ||||||| | Sbjct 585 CCGGGCAAAGAACCAACATCTGAGGACATCATGCATAAATGTCGTCCTCAACCTAATCAA 644 Query 636 TACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGAAAGC 695 || |||| || ||||||||||||||||||||||||||| |||| || |||||| |||| Sbjct 645 AACGTTGTGTCAATCACTGCAAGACATTTCCATTGATGACATGGGACAAGCAGAGCAAGC 704 Query 696 ACTAAGATACCTGAA-AGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGGAGG 754 ||||| ||| ||||| | |||||| |||||||||||||||||| ||| ||||| |||||| Sbjct 705 ACTAACATATCTGAATA-ATTCGGGCTTTAAGGTGGATTGGTTGGAGGGTAAACTGGAGG 763 Query 755 AAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAGAGG 814 |||| |||||||||||||||||||||| | |||||||| |||||||||||||| |||||| Sbjct 764 AAGTAAAGGAAAAGAAGATGGAAGAGCTGTTTGGTAAGACTCGGATGCAAGAATTAGAGG 823 Query 815 AAGAGCTGAAGATCTTCAAGCAGAA-GTGCTCTGACATAGAAGCTCA-ACTGGAGAAAGA 872 |||| || ||| |||| || |||| ||||||||||||||||||| | |||||||||||| Sbjct 824 AAGAACTCAAGGTCTTTAAA-AGAAAGTGCTCTGACATAGAAGCT-ATACTGGAGAAAGA 881 Query 873 GAA 875 ||| Sbjct 882 GAA 884 Score = 329 bits (178), Expect = 2e-89 Identities = 318/380 (84%), Gaps = 31/380 (8%) Strand=Plus/Plus Query 622 CTCAGCCTAATCGATAC-ACTGTGCCAGTCACTGCAAGACATTTCCAT-TGATGACCTGG 679 |||| ||||||||| || | |||| ||||||||||||| ||||||| | ||||| ||| Sbjct 1255 CTCAACCTAATCGAGACGA-TGTGTGTGTCACTGCAAGACCTTTCCATAT-ATGACTTGG 1312 Query 680 GCCAGGCAGAGAAAGCACTAAGATACCTGAA-AGATTC-GGACTTTAAGGTGGATTGGTT 737 |||| |||||| ||||||||| ||||||||| | |||| ||| ||||||||||||||||| Sbjct 1313 GCCAAGCAGAGCAAGCACTAACATACCTGAATA-ATTCGGGA-TTTAAGGTGGATTGGTT 1370 Query 738 AGAGCGTAAATTGGAGGAAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCG 797 ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1371 GGAGCGTAAACTGGAGGAAGTAAAGGAAAAGAAGATGGAAGAGCACATTGGTAAGTCTCG 1430 Query 798 GATGCAAGAACTAGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAGC 857 |||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||| Sbjct 1431 GATGCAAGAATTAGAGAAAGACCTGAAGCTCTTCAAGCAGAAGTGCTCTGACATAGAAGA 1490 Query 858 TCAACTGGAGAAAGAGAAG------C--AA-AA---G---------TGCTCAGACATAGA 896 || |||||||||||||||| | || || | ||||| |||| ||| Sbjct 1491 TCTACTGGAGAAAGAGAAGGAAGAACTCAAGAACTTGAAGAAAAAGTGCTCGGACACAGA 1550 Query 897 AGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTGGCCGCTGCCAGAGCTCCTCCTCTAA 955 |||| | || |||||||||||| |||| | ||||||||| ||||||||||||||||||| Sbjct 1551 AGCTCTACTTGAGAAAGAGAAGAAAAAGGT-GTTGGCCGCCGCCAGAGCTCCTCCTCTAA 1609 Query 956 CGTTGGATGATGTTGTTTGA 975 ||||| ||||| |||| ||| Sbjct 1610 CGTTGAATGATTTTGTCTGA 1629 Score = 283 bits (153), Expect = 1e-75 Identities = 207/232 (89%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 298 ATGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGAACAATGAAGT 356 ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| Sbjct 1024 ATGATTTCCCTTACCAAACTTAATGCCAAAG-AAGGTGGATTTCTTGTGAACAATGAAGT 1082 Query 357 CAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTCAGAGGG 416 ||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1083 CAAGATTGTTGCGGAGGTTTATGTTCTTCAAGTTATTGGCAATTTAGATGTTTTAGAGGG 1142 Query 417 ATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGCTAAACGATGATGGTGTTTC--C 474 ||||||||| |||||| ||||||||||||||||||||||||| |||||||||| | | Sbjct 1143 ATCTCAAGACGTAACTAAACCTCTGAAAAGGATAAGGCTAAATGATGATGGTGCAGCGTC 1202 Query 475 --GTAAAA--CAAAGCATTGATGTCAATGGGTTTCAGGTTCTTCCTTCACAG 522 || | |||| ||| ||||||||||||||||| ||||||||||||||| Sbjct 1203 TAGTCATTTGCAAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254 > Ahg930958 jgi|Araly1|930958|scaffold_303415.1 Length=959 Score = 651 bits (352), Expect = 0.0 Identities = 493/560 (88%), Gaps = 14/560 (3%) Strand=Plus/Plus Query 323 CGAAGA-AAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTT 381 ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 253 CGACGAGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTT 312 Query 382 CTTCAAGTTATTGGCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAA-CTCAACCTCT 440 ||||||||||||||||||||||||||||| |||| ||||| ||| |||| | |||||||| Sbjct 313 CTTCAAGTTATTGGCAAATTAGATGTTTCTGAGGAATCTCTAGAGGTAAAC-CAACCTCT 371 Query 441 GAAAAGGATAAGGCTAAACGATGATGGTGTTTCCGTAAAA-CAA-AGCATTGATGTCAAT 498 ||| ||||||| |||||| | ||||||||| |||| || || ||||||||||| Sbjct 372 GAATAGGATAAAGCTAAATGGTGATGGTGTG---GTAACTTCATCAG--TTGATGTCAAT 426 Query 499 GGGTTTCAGGTTCTTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCA 558 |||||||| |||||||||||||||| |||||| ||||||||||| || |||| ||||||| Sbjct 427 GGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAAAAACACCCA 486 Query 559 AACATGGCACTAGAGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTC 618 ||||||||||| | ||||||||||||||||||||| ||| ||||||||| || |||||| Sbjct 487 GACATGGCACTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCATGCATAAATGTC 546 Query 619 CTCCTCAGCCTAATCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTG 678 ||||||||| ||||| | || |||||||||||||||||||| ||||||||||||||||| Sbjct 547 CTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCCATTGATGACCTG 606 Query 679 GGCCAGGCAGAGAAAGCACTAAGATACCTGAA-AGATTCGGACTTTAAGGTGGATTGGTT 737 ||||| |||||| ||||||||| ||| ||||| | ||| || |||||||||||||||||| Sbjct 607 GGCCAAGCAGAGCAAGCACTAACATATCTGAATA-ATTTGGGCTTTAAGGTGGATTGGTT 665 Query 738 AGAGCGTAAATTGGAGGAAGTGAAGG-AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTC 796 ||| ||||| |||||||||| |||| |||| |||||||||||||||||||||||| ||| Sbjct 666 GGAGTGTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAAGAGCAGATTGGTAAGACTC 724 Query 797 GGATGCAAGAACTAGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAG 856 ||||||||||| ||||| |||| |||||| |||| ||| ||||||||||||||||||||| Sbjct 725 GGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAGTGCTCTGACATAGAAG 784 Query 857 CTCAACTGGAGAAAGAGAAG 876 || ||||||||||||||| Sbjct 785 CTTTGCTGGAGAAAGAGAAG 804 Score = 69.4 bits (37), Expect = 5e-11 Identities = 39/40 (98%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 880 AAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 919 |||||||| ||||||||||||||||||||||||||||||| Sbjct 766 AAGTGCTCTGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805 > Ahg937127 jgi|Araly1|937127|scaffold_501318.1 Length=586 Score = 390 bits (211), Expect = 8e-108 Identities = 447/554 (81%), Gaps = 43/554 (8%) Strand=Plus/Plus Query 1 ATGGGGTATGAGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGTAC 60 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 21 ATGGGAAATGAGAAGTTCACTTGGGTGATTAACAATTTCTCATCTTTGCAATCTAAGT-C 79 Query 61 ATTAAT-TCTGATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGG-G-AT----A 113 ||| | |||||||| ||||| ||||||||||||||||||| |||| || | || | Sbjct 80 ATTTTTATCTGATAAGTTCGTGATCGGTGGCTGCAAATGGTATCTTGTGGCGTATCCCAA 139 Query 114 T--CAGA-AT--G-CTAATTATTTGTCTCTGT-TTCTGATGGTTGCTACTTCAAAAACAT 166 | || | || | ||||||||||||||| | || || |||| |||| || |||| | Sbjct 140 TGGCAAACATAAGAATAATTATTTGTCTCTATATT-TGGTGGTAGCTAATTTTGAAACTT 198 Query 167 TGCCTTGTGGATGGAGAAGATACACACGAT-TTCGCCTAACTGTTGTAAATCAACTTTCC 225 |||||||||||||||| ||| ||| | || || || ||||||||| ||||||||| ||| Sbjct 199 TGCCTTGTGGATGGAGTAGACACATAAAATGTT-GCTTAACTGTTGAAAATCAACTCTCC 257 Query 226 GATGAA-CTTTCCCAACAACGAGAAACGGAA-ACA----TGGTTTGA-CCAAA-ACG-TT 276 || || || || ||||| |||| || | || ||| ||||| | | ||| | | || Sbjct 258 GA-CAACCTCTCACAACAGCGAG-AA-GAAACACAGTGCTGGTTACATCGAAAGA-GATT 313 Query 277 GTTCTCTC-TGGGAATCGACACATGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTG 334 || | | ||| ||| | | ||||||||||||| |||||||||| | ||| |||||| Sbjct 314 -TT-AC-CAAGGGTATCCAGAAATGATTTCCCTTAGAAAACTTAATGCCAAAG-AAGGTG 369 Query 335 GATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTG 394 ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 370 GATTTGTTGTGAACAATGAAGTCAAGATTATTGTGGAGGTTGACGTTCTTCAAGTTATTG 429 Query 395 GCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGC 454 |||||||||||||||| |||||||||||||| || ||||||||| |||||| ||| |||| Sbjct 430 GCAAATTAGATGTTTCTGAGGGATCTCAAGAGGTTACTCAACCTTTGAAAATGATGAGGC 489 Query 455 TAAACGATGATGGTGTTTC--C--GTAAAA--CAAAGCATTGATGTCAATGGGTTTCAGG 508 |||| |||||||||| | | || | |||| ||| ||||||||||||||||| | Sbjct 490 TAAATGATGATGGTGCAGCGTCTAGTCATTTGCAAACCATGGATGTCAATGGGTTTCAAG 549 Query 509 TTCTTCCTTCACAG 522 |||||||||||||| Sbjct 550 TTCTTCCTTCACAG 563 > Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 Length=1246 Score = 95.3 bits (51), Expect = 7e-19 Identities = 318/440 (72%), Gaps = 45/440 (10%) Strand=Plus/Plus Query 13 AAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTA-AGTACATTAATTCTGA 71 ||||||||||||||||||||||||||||| ||| |||||| | | | ||| |||| || Sbjct 93 AAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAATCCACAAAA-ATTTATTCGGA 151 Query 72 TAAATTCGTTA-TCGGTGGCTGCAAATGGTTTCTTAAGGGATATC--A--G-AA-TGCTA 124 | ||||| || ||| ||||||||||||| |||| || | || | | || || | Sbjct 152 TGAATTC-TTCGTCGATGGCTGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTG 210 Query 125 ATT-AT---TTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCCTTG-TGGATG 179 || | ||||| |||| |||| |||||| | || || ||| | |||||| Sbjct 211 -TTGAGAAGTTGTCACTGTATCTGGCCGTTGCTGGTGGTGAATTTTTACCT-GATGGATG 268 Query 180 GAGAAGATACACACGATTTCGC-CT-AACTGTTGTAAATCAACTTTCCGATGAACTTTCC 237 ||||||| || || ||| || | || || ||| || |||||||| || || ||||| || Sbjct 269 GAGAAGACACGCA-GATATC-CACTTAAGTGTAGTGAATCAACTCTCTGAAGAACTCTCT 326 Query 238 C-AACAACGAGAAACGGAAACATG-GTTTGAC-CAAA-ACGTTGTTCTCTCTGGGAATC- 292 | ||| | ||||||| ||| ||| |||||| | | || ||| | ||||| | Sbjct 327 CTAACTA-GAGAAACAGAA-CATTTGTTTGATGCGAGTAC-TTG--CGA-CTGGGGTTTT 380 Query 293 GACA-CA-TGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGAACA 349 | || || || ||||||||| |||||| ||| | |||| ||||| |||| || | | Sbjct 381 G-CATCAATGTTTTCCCTTAAAAAACTTCATGACAAAGAT-GGTGG-TTTCCTG-GTT-A 435 Query 350 ATG-A-AG-TCAAGATTGTTGTGGAGGT-TGATGTTCTTCAAGTTATTGGCAAATTAGAT 405 ||| | || |||||||| |||| ||||| | ||||||| ||||||||||||||||||| Sbjct 436 ATGGAGAGCTCAAGATTATTGTCGAGGTATC-TGTTCTTGAAGTTATTGGCAAATTAGAC 494 Query 406 GTTTCAGAGGGATCTCAAGA 425 || |||||| || | |||| Sbjct 495 GTACCAGAGGAATGTGAAGA 514 > Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 Length=510 Score = 58.4 bits (31), Expect = 1e-07 Identities = 33/34 (97%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 488 TTGATGTCAATGGGTTTCAGGTTCTTCCTTCACA 521 |||| ||||||||||||||||||||||||||||| Sbjct 92 TTGAAGTCAATGGGTTTCAGGTTCTTCCTTCACA 125 > Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 Length=1089 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39 ||||||||||||||||||||||||||||| Sbjct 23 AGAAGTTCACTTGGGTGATTAAGAATTTC 51 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39 ||||||||||||||||||||||||||||| Sbjct 287 AGAAGTTCACTTGGGTGATTAAGAATTTC 315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5