BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44790.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937123 jgi|Araly1|937123|scaffold_501314.1 1133 0.0
Ahg897256 jgi|Araly1|897256|Al_scaffold_0005_1222 979 0.0
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 787 0.0
Ahg930958 jgi|Araly1|930958|scaffold_303415.1 651 0.0
Ahg937127 jgi|Araly1|937127|scaffold_501318.1 390 8e-108
Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1 95.3 7e-19
Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1 58.4 1e-07
Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375 54.7 1e-06
> Ahg937123 jgi|Araly1|937123|scaffold_501314.1
Length=1048
Score = 1133 bits (613), Expect = 0.0
Identities = 870/989 (88%), Gaps = 38/989 (4%)
Strand=Plus/Plus
Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAA-GTACATTAATTCT 69
|||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 43 AGAAATTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGGCA-ATTGATTCT 101
Query 70 GATAAATTCGTTATCGGTGGCTGCAAAT-G-G---T-T----TCT--TAAGGGATATCAG 117
||| |||| || ||||||||||||||| | | | | ||| |||||||||||||
Sbjct 102 GATGAATTTGTGGTCGGTGGCTGCAAATGGTGTCTTGTGGCCTCTCCTAAGGGATATCAG 161
Query 118 AATGCTAATTATTTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCC------T 171
||||||||||||||||||||||| ||| |||||||||||| |||||| ||||| |
Sbjct 162 AATGCTAATTATTTGTCTCTGTTCCTGGTGGTTGCTACTTTAAAAACTTTGCCTTGTGGT 221
Query 172 TGTGGATGGAGAAGATACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAA 231
||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| ||
Sbjct 222 TGTGGATGGAGAAGACACATAAGATTTCGCCTAACTGTTGTAAATCAACTCTCCGA-CAA 280
Query 232 -CTTTCCCAACAACGAGAAACGGAA-ACATGGTTTGACCAA-AACGTTGTTCTCTCTGGG 288
|| |||| || | |||||| ||| | |||||| || || | || | | ||| ||||
Sbjct 281 CCTCTCCCGACGAGGAGAAAAAGAAGA-ATGGTTAGATGAATACCG-TACTATCTGTGGG 338
Query 289 AATCGACACATGATTTC-CCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGA 346
||| | | ||| ||| |||| |||||||||||| | ||| ||||||||||||||||||
Sbjct 339 TATCAAAAAATG-CTTCTCCTTTCCAAACTTAATGCCAAAG-AAGGTGGATTTCTTGTGA 396
Query 347 ACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 406
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 397 ACAATGAAGTCAAGATTGTTGCGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATG 456
Query 407 TTTCAGAGGGA-TCTCAAGAAGTAACTCAACCTCTGAAAAGGA-TAAGGCTAAACGATGA 464
|||| || ||| |||||||| ||| |||||||||||||||||| ||| ||||| ||||
Sbjct 457 TTTCTGA-GGATTCTCAAGAGGTAGCTCAACCTCTGAAAAGGATTAA-GCTAATTGATGG 514
Query 465 TGGTGTTTCCGTAAAAC-AAAGCATTGATGTCAATGGGTTTCAGGTTCTTCCTTCACAGG 523
||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 515 TGGTGTTTCGGT-AAACGAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGG 573
Query 524 TGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACTAGAGTTCCGAGCAA 583
|||||| ||||||||||| || |||||||||||| |||||||| ||||||| |||| ||
Sbjct 574 CGGAATCCGTGAAACGTATATTCGAAAGACACCCAGACATGGCATTAGAGTTTCGAGTAA 633
Query 584 AGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAATCGATACACTGT 643
|||||||||| ||||||||| ||| || ||| ||||||||| | ||||||| || |||
Sbjct 634 TGAACCAACATATGAGGACATTATGCATAAATCTCCTCCTCAACATAATCGAGACTTTGT 693
Query 644 GCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGAAAGCACTAAGAT 703
||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 694 GCCAGTCACTGAAAGACATTTCCATTCATGAACTGGGCCAAGCAGAGAAAGCACTAAGAT 753
Query 704 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGGAGGAAGTGAAGG 763
||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 754 ACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGGAGGAAGTAAAGG 813
Query 764 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAGAGGAAGAGCTGA 823
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 814 AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAATTAGAGGAAGAACTGA 873
Query 824 AGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAAAGAGAAGCAAAAGT 883
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 874 AGGTCTTCAAGCAGAATTGCTCTGACATAGAAGCTCAACTGGAGAAAGAAAAGCAAAAGT 933
Query 884 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTGGCCGCTGCCAGA 942
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 934 GCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGAAAAAGGTA-TTGGCCGCTGCCAGA 992
Query 943 GCTCCTCCTCTAACGTTGGATGATGTTGT 971
||||||| |||||||||||||||||||||
Sbjct 993 GCTCCTCTTCTAACGTTGGATGATGTTGT 1021
> Ahg897256 jgi|Araly1|897256|Al_scaffold_0005_1222
Length=1044
Score = 979 bits (530), Expect = 0.0
Identities = 853/1001 (85%), Gaps = 53/1001 (5%)
Strand=Plus/Plus
Query 14 AGTTCACTTGGGTGATTAAGAATTTCTCATC---TTTGCAATCTAAG-TACATTAATTCT 69
||||||||||| |||||||||| |||||||| |||||||||| || || ||| |||||
Sbjct 11 AGTTCACTTGGATGATTAAGAACTTCTCATCTAATTTGCAATCTGAGTTA-ATTGATTCT 69
Query 70 GATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGGGATATCAGAATGCTAATTAT 129
||| |||| || ||||||||||||||||||||||||| |||| | || |||| |||||||
Sbjct 70 GATGAATTTGTGATCGGTGGCTGCAAATGGTTTCTTATGGGAGAACAAAATGATAATTAT 129
Query 130 TTGTCTCTGTTTCTGATGGTTGCT-A-CTTCAAAAACATTGCCTTGTGGATGGAGAAGAT 187
|| |||||||||||| |||||||| | ||| |||| |||||||||||||||||||||
Sbjct 130 TTTTCTCTGTTTCTGGTGGTTGCTGATTTTC-AAAA-TTTGCCTTGTGGATGGAGAAGAC 187
Query 188 ACACACGATTTCGCCTAACTGTTGTAAATCAACTTTCCGATGAACTTTCC---CA---A- 240
|| || ||||||| |||||||||||||||||| |||||||| |||| ||| || |
Sbjct 188 ACTCAAGATTTCGTCTAACTGTTGTAAATCAAATTTCCGATAAACTCTCCTTGCATCGAG 247
Query 241 ------CAACGAGAAACGGAAAC-ATGGTTTGACCAAAACGTTGTTCTCTC-TGGGAATC 292
| || |||||| | ||| |||||| || ||||| ||| | | || |||| ||
Sbjct 248 TTTTGTCTAC-AGAAACAG-AACGATGGTTCGATCAAAAAGTTCCTGT-TCATGGGTAT- 303
Query 293 G-ACACATGATTTCCCTTACCAAACTTAATGCGAAG-AAAGGTGGATTTCTTGTGAACAA 350
| | | |||||||| ||| ||||||| |||| || |||||||||||||||||||||||
Sbjct 304 GCAGAAATGATTTCTCTTGCCAAACTAAATG-TCAGAAAAGGTGGATTTCTTGTGAACAA 362
Query 351 TGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTC 410
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 363 TGAAGTCAAGATTGTTGTTGAGGTTGATGTTCTTCAAGTTACTGGCAAATTAGATGTTTC 422
Query 411 AGAGGGATCTCAAGAAGTA-ACTCAACCTCTGAAAAGGATAAGGCTAAACGATGATGGTG 469
|||| ||||| || || | || ||| || |||||||||||| |||||| | | | ||||
Sbjct 423 TGAGGAATCTCTAG-AGGATACACAAACTTTGAAAAGGATAAAGCTAAAAGGTTACGGTG 481
Query 470 T--T-TC-CGT-A-----A-AA-CAAA--GCAT---T-GATGTCAATGGGTTTCAGGTTC 511
| | || || | | || ||| ||| | ||||||||||||||| ||||
Sbjct 482 TGGTGTCTAGTCATTTGCATAAGGAAACTTCATCAGTCAATGTCAATGGGTTTCTTGTTC 541
Query 512 TTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCAAACATGGCACTAG 571
||||||| ||||||||||| ||||||||||| || |||||||||||| |||||||| |||
Sbjct 542 TTCCTTCTCAGGTGGAATCTGTGAAACGTATATTCGAAAGACACCCAGACATGGCAATAG 601
Query 572 AGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAA 631
||||||||||||||||| ||||| ||||||||| || || || ||||||||| | |||
Sbjct 602 AGTTCCGAGCAAAGAACAAACATATGAGGACATTATCCATCAACCTCCTCCTCAACATAA 661
Query 632 TCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGA 691
|||| || ||||||||||| |||||||| |||||||||||||||| |||| |||||||
Sbjct 662 TCGAGACTTTGTGCCAGTCATTGCAAGACTTTTCCATTGATGACCTTTGCCAAGCAGAGA 721
Query 692 AAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGG 751
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 722 AAGCACTAAGATACCTGAAAGATTCGGACTTTAAGGTGGATTGGTTAGAGCATAAACTGG 781
Query 752 AGGAAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAG 811
||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 782 AGGAAGTAAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGACTCGGGTGCAAGAACTAG 841
Query 812 AGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAGCTCAACTGGAGAAAG 871
||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 842 AGGAAGACCTGAAGGTCTTCAAGCAGAATTGTTCTGACATAGAAGCTCAACTGGAGAAAG 901
Query 872 AGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTG 930
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 902 AGAAGCAAAAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGACAAAGGTA-TTG 960
Query 931 GCCGCTGCCAGAGCTCCTCCTCTAACGTTGGATGATGTTGT 971
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GCCGCTGCCAAAGCTCCTCCTCTAACGTTGGATGATGTTGT 1001
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 787 bits (426), Expect = 0.0
Identities = 752/903 (83%), Gaps = 47/903 (5%)
Strand=Plus/Plus
Query 1 ATGGGGTATGAGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGTAC 60
|||||| ||||||| ||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 1 ATGGGGAATGAGAAATTCACTTGGGTGATTAAGAATTTCTGTTCTTTGCAATCTGAGTCC 60
Query 61 ATTAATTCTGATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGGGATAT--C--A 116
|||||||||||| |||||| ||||||||||||||||||| |||| || ||| | |
Sbjct 61 ATTAATTCTGATGTATTCGTGATCGGTGGCTGCAAATGGTATCTTGCGGCTTATCCCAAA 120
Query 117 -G---A-AT---GCTAATTATTTGTCTCTGTTTCTGATGGTTGCT-ACTTCAAAAACATT 167
| | || ||| ||||||||| ||| |||||| |||| ||| | || ||||| ||
Sbjct 121 GGAAAATATAAGGCTGATTATTTGTTTCTATTTCTGGTGGTAGCTGA-TTTTAAAACTTT 179
Query 168 GCCTTGTGGATGGAGAAGATACACACGATTTCGCCTAACTGTT-GTAAATCAACTTTCCG 226
||| | |||||||| |||| ||| | ||| |||||||||| || ||||||||| | |||
Sbjct 180 GCCATATGGATGGAAAAGACACATAAGATATCGCCTAACT-TTCGTAAATCAAATCTCCT 238
Query 227 ATGAACTTTCCCAACAACGA-GAAACGGAA-ACATGGTTTGACCAAA-A-CGTTGTTCTC 282
||| ||| |||| || | || |||| ||| | |||| | | ||| | || | ||||
Sbjct 239 ATGGACTCTCCCTACTAGGAGGAAA-AGAAGA-ATGGATAG-GTAAATACCG-TCCTCTC 294
Query 283 T-CTGGGAATCGACACATGATTTC-CCTTACCAAACTTAATG-CGAAGAAA-GGTGGATT 338
| | ||| ||| | | |||| ||| |||||||||||||||| | || ||| ||||||||
Sbjct 295 TGC-GGGTATCAAAAAATGA-TTCTTCTTACCAAACTTAATGAC-AA-AAAGGGTGGATT 350
Query 339 TCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAA 398
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 351 TCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTTCTTCAAGTGATTGGCAA 410
Query 399 ATTAGATGTTTCAGAGGGATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGCTAAA 458
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 411 ATTAGATGTTTCTGAGGAATCTCAAGAGGTAACTCAACCTCTGAAAAGGATAAAGCTAAA 470
Query 459 CGATGATGGTGTTTCCGTAAAA-CAA-AGCATTGATGTCAATGGGTTTCAGGTTCTTCCT 516
| ||||||||| |||| || || | ||||||||||| ||||| |||||||||
Sbjct 471 TGGTGATGGTGTG---GTAACTTCATCAGTA--GATGTCAATGGCTTTCAAGTTCTTCCT 525
Query 517 TCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCA-AACATGGCACTAGAGTT 575
||| ||| |||||| |||||||| || || |||| ||||||| || ||||||||| ||||
Sbjct 526 TCAGAGGCGGAATCTGTGAAACGCATATTCGAAAAACACCCAGAA-ATGGCACTAAAGTT 584
Query 576 CCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTCCTCCTCAGCCTAATCGA 635
||| ||||||||||||||| ||||||||||||| || |||||| |||||| ||||||| |
Sbjct 585 CCGGGCAAAGAACCAACATCTGAGGACATCATGCATAAATGTCGTCCTCAACCTAATCAA 644
Query 636 TACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTGGGCCAGGCAGAGAAAGC 695
|| |||| || ||||||||||||||||||||||||||| |||| || |||||| ||||
Sbjct 645 AACGTTGTGTCAATCACTGCAAGACATTTCCATTGATGACATGGGACAAGCAGAGCAAGC 704
Query 696 ACTAAGATACCTGAA-AGATTCGGACTTTAAGGTGGATTGGTTAGAGCGTAAATTGGAGG 754
||||| ||| ||||| | |||||| |||||||||||||||||| ||| ||||| ||||||
Sbjct 705 ACTAACATATCTGAATA-ATTCGGGCTTTAAGGTGGATTGGTTGGAGGGTAAACTGGAGG 763
Query 755 AAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCGGATGCAAGAACTAGAGG 814
|||| |||||||||||||||||||||| | |||||||| |||||||||||||| ||||||
Sbjct 764 AAGTAAAGGAAAAGAAGATGGAAGAGCTGTTTGGTAAGACTCGGATGCAAGAATTAGAGG 823
Query 815 AAGAGCTGAAGATCTTCAAGCAGAA-GTGCTCTGACATAGAAGCTCA-ACTGGAGAAAGA 872
|||| || ||| |||| || |||| ||||||||||||||||||| | ||||||||||||
Sbjct 824 AAGAACTCAAGGTCTTTAAA-AGAAAGTGCTCTGACATAGAAGCT-ATACTGGAGAAAGA 881
Query 873 GAA 875
|||
Sbjct 882 GAA 884
Score = 329 bits (178), Expect = 2e-89
Identities = 318/380 (84%), Gaps = 31/380 (8%)
Strand=Plus/Plus
Query 622 CTCAGCCTAATCGATAC-ACTGTGCCAGTCACTGCAAGACATTTCCAT-TGATGACCTGG 679
|||| ||||||||| || | |||| ||||||||||||| ||||||| | ||||| |||
Sbjct 1255 CTCAACCTAATCGAGACGA-TGTGTGTGTCACTGCAAGACCTTTCCATAT-ATGACTTGG 1312
Query 680 GCCAGGCAGAGAAAGCACTAAGATACCTGAA-AGATTC-GGACTTTAAGGTGGATTGGTT 737
|||| |||||| ||||||||| ||||||||| | |||| ||| |||||||||||||||||
Sbjct 1313 GCCAAGCAGAGCAAGCACTAACATACCTGAATA-ATTCGGGA-TTTAAGGTGGATTGGTT 1370
Query 738 AGAGCGTAAATTGGAGGAAGTGAAGGAAAAGAAGATGGAAGAGCAGATTGGTAAGTCTCG 797
||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1371 GGAGCGTAAACTGGAGGAAGTAAAGGAAAAGAAGATGGAAGAGCACATTGGTAAGTCTCG 1430
Query 798 GATGCAAGAACTAGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAGC 857
|||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1431 GATGCAAGAATTAGAGAAAGACCTGAAGCTCTTCAAGCAGAAGTGCTCTGACATAGAAGA 1490
Query 858 TCAACTGGAGAAAGAGAAG------C--AA-AA---G---------TGCTCAGACATAGA 896
|| |||||||||||||||| | || || | ||||| |||| |||
Sbjct 1491 TCTACTGGAGAAAGAGAAGGAAGAACTCAAGAACTTGAAGAAAAAGTGCTCGGACACAGA 1550
Query 897 AGCTTTGCTGGAGAAAGAGAAGGCAAAG-TCGTTGGCCGCTGCCAGAGCTCCTCCTCTAA 955
|||| | || |||||||||||| |||| | ||||||||| |||||||||||||||||||
Sbjct 1551 AGCTCTACTTGAGAAAGAGAAGAAAAAGGT-GTTGGCCGCCGCCAGAGCTCCTCCTCTAA 1609
Query 956 CGTTGGATGATGTTGTTTGA 975
||||| ||||| |||| |||
Sbjct 1610 CGTTGAATGATTTTGTCTGA 1629
Score = 283 bits (153), Expect = 1e-75
Identities = 207/232 (89%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 298 ATGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGAACAATGAAGT 356
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 1024 ATGATTTCCCTTACCAAACTTAATGCCAAAG-AAGGTGGATTTCTTGTGAACAATGAAGT 1082
Query 357 CAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTGGCAAATTAGATGTTTCAGAGGG 416
||||||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||
Sbjct 1083 CAAGATTGTTGCGGAGGTTTATGTTCTTCAAGTTATTGGCAATTTAGATGTTTTAGAGGG 1142
Query 417 ATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGCTAAACGATGATGGTGTTTC--C 474
||||||||| |||||| ||||||||||||||||||||||||| |||||||||| | |
Sbjct 1143 ATCTCAAGACGTAACTAAACCTCTGAAAAGGATAAGGCTAAATGATGATGGTGCAGCGTC 1202
Query 475 --GTAAAA--CAAAGCATTGATGTCAATGGGTTTCAGGTTCTTCCTTCACAG 522
|| | |||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1203 TAGTCATTTGCAAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254
> Ahg930958 jgi|Araly1|930958|scaffold_303415.1
Length=959
Score = 651 bits (352), Expect = 0.0
Identities = 493/560 (88%), Gaps = 14/560 (3%)
Strand=Plus/Plus
Query 323 CGAAGA-AAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTT 381
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 253 CGACGAGAAGGTGGATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTAGATGTT 312
Query 382 CTTCAAGTTATTGGCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAA-CTCAACCTCT 440
||||||||||||||||||||||||||||| |||| ||||| ||| |||| | ||||||||
Sbjct 313 CTTCAAGTTATTGGCAAATTAGATGTTTCTGAGGAATCTCTAGAGGTAAAC-CAACCTCT 371
Query 441 GAAAAGGATAAGGCTAAACGATGATGGTGTTTCCGTAAAA-CAA-AGCATTGATGTCAAT 498
||| ||||||| |||||| | ||||||||| |||| || || |||||||||||
Sbjct 372 GAATAGGATAAAGCTAAATGGTGATGGTGTG---GTAACTTCATCAG--TTGATGTCAAT 426
Query 499 GGGTTTCAGGTTCTTCCTTCACAGGTGGAATCGGTGAAACGTATCTTTGAAAGACACCCA 558
|||||||| |||||||||||||||| |||||| ||||||||||| || |||| |||||||
Sbjct 427 GGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACGTATATTCGAAAAACACCCA 486
Query 559 AACATGGCACTAGAGTTCCGAGCAAAGAACCAACATGTGAGGACATCATGTATGAATGTC 618
||||||||||| | ||||||||||||||||||||| ||| ||||||||| || ||||||
Sbjct 487 GACATGGCACTAAAATTCCGAGCAAAGAACCAACATTTGAAGACATCATGCATAAATGTC 546
Query 619 CTCCTCAGCCTAATCGATACACTGTGCCAGTCACTGCAAGACATTTCCATTGATGACCTG 678
||||||||| ||||| | || |||||||||||||||||||| |||||||||||||||||
Sbjct 547 CTCCTCAGCTTAATCAAGACGTTGTGCCAGTCACTGCAAGACCTTTCCATTGATGACCTG 606
Query 679 GGCCAGGCAGAGAAAGCACTAAGATACCTGAA-AGATTCGGACTTTAAGGTGGATTGGTT 737
||||| |||||| ||||||||| ||| ||||| | ||| || ||||||||||||||||||
Sbjct 607 GGCCAAGCAGAGCAAGCACTAACATATCTGAATA-ATTTGGGCTTTAAGGTGGATTGGTT 665
Query 738 AGAGCGTAAATTGGAGGAAGTGAAGG-AAAAGAAGATGGAAGAGCAGATTGGTAAGTCTC 796
||| ||||| |||||||||| |||| |||| |||||||||||||||||||||||| |||
Sbjct 666 GGAGTGTAAACTGGAGGAAGTAAAGGCAAAA-AAGATGGAAGAGCAGATTGGTAAGACTC 724
Query 797 GGATGCAAGAACTAGAGGAAGAGCTGAAGATCTTCAAGCAGAAGTGCTCTGACATAGAAG 856
||||||||||| ||||| |||| |||||| |||| ||| |||||||||||||||||||||
Sbjct 725 GGATGCAAGAATTAGAGAAAGACCTGAAGCTCTTTAAGAAGAAGTGCTCTGACATAGAAG 784
Query 857 CTCAACTGGAGAAAGAGAAG 876
|| |||||||||||||||
Sbjct 785 CTTTGCTGGAGAAAGAGAAG 804
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 880 AAGTGCTCAGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 919
|||||||| |||||||||||||||||||||||||||||||
Sbjct 766 AAGTGCTCTGACATAGAAGCTTTGCTGGAGAAAGAGAAGG 805
> Ahg937127 jgi|Araly1|937127|scaffold_501318.1
Length=586
Score = 390 bits (211), Expect = 8e-108
Identities = 447/554 (81%), Gaps = 43/554 (8%)
Strand=Plus/Plus
Query 1 ATGGGGTATGAGAAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTAAGTAC 60
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 21 ATGGGAAATGAGAAGTTCACTTGGGTGATTAACAATTTCTCATCTTTGCAATCTAAGT-C 79
Query 61 ATTAAT-TCTGATAAATTCGTTATCGGTGGCTGCAAATGGTTTCTTAAGG-G-AT----A 113
||| | |||||||| ||||| ||||||||||||||||||| |||| || | || |
Sbjct 80 ATTTTTATCTGATAAGTTCGTGATCGGTGGCTGCAAATGGTATCTTGTGGCGTATCCCAA 139
Query 114 T--CAGA-AT--G-CTAATTATTTGTCTCTGT-TTCTGATGGTTGCTACTTCAAAAACAT 166
| || | || | ||||||||||||||| | || || |||| |||| || |||| |
Sbjct 140 TGGCAAACATAAGAATAATTATTTGTCTCTATATT-TGGTGGTAGCTAATTTTGAAACTT 198
Query 167 TGCCTTGTGGATGGAGAAGATACACACGAT-TTCGCCTAACTGTTGTAAATCAACTTTCC 225
|||||||||||||||| ||| ||| | || || || ||||||||| ||||||||| |||
Sbjct 199 TGCCTTGTGGATGGAGTAGACACATAAAATGTT-GCTTAACTGTTGAAAATCAACTCTCC 257
Query 226 GATGAA-CTTTCCCAACAACGAGAAACGGAA-ACA----TGGTTTGA-CCAAA-ACG-TT 276
|| || || || ||||| |||| || | || ||| ||||| | | ||| | | ||
Sbjct 258 GA-CAACCTCTCACAACAGCGAG-AA-GAAACACAGTGCTGGTTACATCGAAAGA-GATT 313
Query 277 GTTCTCTC-TGGGAATCGACACATGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTG 334
|| | | ||| ||| | | ||||||||||||| |||||||||| | ||| ||||||
Sbjct 314 -TT-AC-CAAGGGTATCCAGAAATGATTTCCCTTAGAAAACTTAATGCCAAAG-AAGGTG 369
Query 335 GATTTCTTGTGAACAATGAAGTCAAGATTGTTGTGGAGGTTGATGTTCTTCAAGTTATTG 394
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 370 GATTTGTTGTGAACAATGAAGTCAAGATTATTGTGGAGGTTGACGTTCTTCAAGTTATTG 429
Query 395 GCAAATTAGATGTTTCAGAGGGATCTCAAGAAGTAACTCAACCTCTGAAAAGGATAAGGC 454
|||||||||||||||| |||||||||||||| || ||||||||| |||||| ||| ||||
Sbjct 430 GCAAATTAGATGTTTCTGAGGGATCTCAAGAGGTTACTCAACCTTTGAAAATGATGAGGC 489
Query 455 TAAACGATGATGGTGTTTC--C--GTAAAA--CAAAGCATTGATGTCAATGGGTTTCAGG 508
|||| |||||||||| | | || | |||| ||| ||||||||||||||||| |
Sbjct 490 TAAATGATGATGGTGCAGCGTCTAGTCATTTGCAAACCATGGATGTCAATGGGTTTCAAG 549
Query 509 TTCTTCCTTCACAG 522
||||||||||||||
Sbjct 550 TTCTTCCTTCACAG 563
> Ahg486280 jgi|Araly1|486280|fgenesh2_kg.5__2272__AT3G58270.1
Length=1246
Score = 95.3 bits (51), Expect = 7e-19
Identities = 318/440 (72%), Gaps = 45/440 (10%)
Strand=Plus/Plus
Query 13 AAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTA-AGTACATTAATTCTGA 71
||||||||||||||||||||||||||||| ||| |||||| | | | ||| |||| ||
Sbjct 93 AAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAATCCACAAAA-ATTTATTCGGA 151
Query 72 TAAATTCGTTA-TCGGTGGCTGCAAATGGTTTCTTAAGGGATATC--A--G-AA-TGCTA 124
| ||||| || ||| ||||||||||||| |||| || | || | | || || |
Sbjct 152 TGAATTC-TTCGTCGATGGCTGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTG 210
Query 125 ATT-AT---TTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCCTTG-TGGATG 179
|| | ||||| |||| |||| |||||| | || || ||| | ||||||
Sbjct 211 -TTGAGAAGTTGTCACTGTATCTGGCCGTTGCTGGTGGTGAATTTTTACCT-GATGGATG 268
Query 180 GAGAAGATACACACGATTTCGC-CT-AACTGTTGTAAATCAACTTTCCGATGAACTTTCC 237
||||||| || || ||| || | || || ||| || |||||||| || || ||||| ||
Sbjct 269 GAGAAGACACGCA-GATATC-CACTTAAGTGTAGTGAATCAACTCTCTGAAGAACTCTCT 326
Query 238 C-AACAACGAGAAACGGAAACATG-GTTTGAC-CAAA-ACGTTGTTCTCTCTGGGAATC- 292
| ||| | ||||||| ||| ||| |||||| | | || ||| | ||||| |
Sbjct 327 CTAACTA-GAGAAACAGAA-CATTTGTTTGATGCGAGTAC-TTG--CGA-CTGGGGTTTT 380
Query 293 GACA-CA-TGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGAACA 349
| || || || ||||||||| |||||| ||| | |||| ||||| |||| || | |
Sbjct 381 G-CATCAATGTTTTCCCTTAAAAAACTTCATGACAAAGAT-GGTGG-TTTCCTG-GTT-A 435
Query 350 ATG-A-AG-TCAAGATTGTTGTGGAGGT-TGATGTTCTTCAAGTTATTGGCAAATTAGAT 405
||| | || |||||||| |||| ||||| | ||||||| |||||||||||||||||||
Sbjct 436 ATGGAGAGCTCAAGATTATTGTCGAGGTATC-TGTTCTTGAAGTTATTGGCAAATTAGAC 494
Query 406 GTTTCAGAGGGATCTCAAGA 425
|| |||||| || | ||||
Sbjct 495 GTACCAGAGGAATGTGAAGA 514
> Ahg486285 jgi|Araly1|486285|fgenesh2_kg.5__2277__AT3G58330.1
Length=510
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 488 TTGATGTCAATGGGTTTCAGGTTCTTCCTTCACA 521
|||| |||||||||||||||||||||||||||||
Sbjct 92 TTGAAGTCAATGGGTTTCAGGTTCTTCCTTCACA 125
> Ahg322831 jgi|Araly1|322831|fgenesh1_pm.C_scaffold_5000375
Length=1089
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39
|||||||||||||||||||||||||||||
Sbjct 23 AGAAGTTCACTTGGGTGATTAAGAATTTC 51
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 11 AGAAGTTCACTTGGGTGATTAAGAATTTC 39
|||||||||||||||||||||||||||||
Sbjct 287 AGAAGTTCACTTGGGTGATTAAGAATTTC 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5