BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44810.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227 488 4e-137
Ahg897260 jgi|Araly1|897260|Al_scaffold_0005_1226 237 2e-61
Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878 158 1e-37
Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657 158 1e-37
> Ahg897261 jgi|Araly1|897261|Al_scaffold_0005_1227
Length=885
Score = 488 bits (264), Expect = 4e-137
Identities = 359/403 (89%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 524 TTTGGTTTGATAGA-ATAAAGTTCTCTAATGTGCTTCTTGCTGGATGCCCTGCACTTGAG 582
|||||||||| ||| | ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 398 TTTGGTTTGAGAGAGA-AAATTTCTCTAATGTGCTTCTTGCTGGTTGCCCTGCACTTGAG 456
Query 583 GACTTAACCATAGACCAAAAGTCTTTTCCAGGG-TTGCCGAACGTTGTTTCGAGCAAAAC 641
||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||
Sbjct 457 GACTTAACCATAGACCAAAAGTCTTTTCC-GGGATTGCCAAACGTTGTTTCCAGCAAAAC 515
Query 642 CGTTAAGAGTCTATCCATCGTCTATAAATATTCTG-CTGATTTC-GATTGGTTTCGCACT 699
| ||||||| || ||||||||||||| | | | | ||| | | ||||||||||||||
Sbjct 516 CATTAAGAGACTCTCCATCGTCTATATACGTGC-GAATGA-TGCTGATTGGTTTCGCACG 573
Query 700 GTTGCACTTGACACACCAAACCTTGTCACCCTCCTCTACTCTACCTATGCTCGGCATAGG 759
||||| |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 574 GTTGCGCTTGACACACCAAAGCTTCTCACCCTCTTCTACTCTACCTATGCTCGGCATAGG 633
Query 760 TATCGACATTGCAATTTAGAGTCCCTTGTCAATGCTACACTGGATCTTCATTTCTTAGAA 819
|||||||||||||||||||| || |||||||| || ||||| ||||||||||||| ||||
Sbjct 634 TATCGACATTGCAATTTAGACTCGCTTGTCAAAGCAACACTTGATCTTCATTTCTCAGAA 693
Query 820 AAT----TGT--GATGAGGCTTTTGAACCGAATGTGACGGATCTCATGATTGCGGTACGC 873
||| | | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 AATGAAATTTTTGATGAGGCTTTTGAACCGAATGTGACGGATCTCATGATTGCGGTGCGC 753
Query 874 AATGTCCAGATGCTTCATTTGACTTCTTCTGCTACTGAGGTGA 916
|||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 754 AATGTCAAGATGCTTCATTTGACTTTTTCTGCTACTGAGATGA 796
Score = 148 bits (80), Expect = 8e-35
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1098 AGATGAAGATGAGTTTGATGAAATTCACATTCCCCGGAGTAACAAAGTTAACATGTTGCG 1157
||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 791 AGATGAACATGAGTTTGATGAAATCCGCATTCCCCGGAGTAACAAAGTTAACATGTTGCG 850
Query 1158 TATCATACAGTGTCAAGGAACTGAAAACGAGCTGA 1192
|||||||||||||||||||| ||||| ||||||||
Sbjct 851 TATCATACAGTGTCAAGGAAGTGAAATCGAGCTGA 885
> Ahg897260 jgi|Araly1|897260|Al_scaffold_0005_1226
Length=882
Score = 237 bits (128), Expect = 2e-61
Identities = 148/158 (94%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 1166 AGTGTCAAGGAACTGAAAACGAGCTGAAACACATTAGCCATTTCTTACTGAAAATGGAGT 1225
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGTGTCAAGGAAGTGACAACGAGCTGAAACACATTAGCCATTTCTTACTGAAAATGGAGT 781
Query 1226 GTCTTCAATTGGTGCAAGTCAATTTTTCAGAGACAATTGTTGACTCCAAAAAGGTGCAAC 1285
|||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 782 GTCTTCAACTGGTGCATGTTAACTTTTCAGAGACAATTGTTGACTCCAAAAAGGTGCAAC 841
Query 1286 TCACAGAGGATCTGATGAAGCTTCCCTCTGCTTCATCC 1323
||||||||||| || | ||||||||||| |||||||||
Sbjct 842 TCACAGAGGATTTGTTTAAGCTTCCCTCAGCTTCATCC 879
> Ahg347486 jgi|Araly1|347486|fgenesh1_pg.C_scaffold_5000878
Length=948
Score = 158 bits (85), Expect = 1e-37
Identities = 331/444 (75%), Gaps = 40/444 (9%)
Strand=Plus/Plus
Query 913 GTGATTTCGCA-ATGCTGCAAAGGCGGGCTCCCCATGTTCAAAAACCTCCTTGTTTTAGT 971
|||||||| | ||||||||| || || | || ||||||| |||||| ||| ||||||
Sbjct 532 GTGATTTC-TATATGCTGCAATGGTGGATTACCGGTGTTCAACAACCTCGTTGATTTAGT 590
Query 972 GTTTTTGGGTAACACTGAACGAGTTTGGAAAGTG-TTTCTTCCACTTCTGCTAGAGCATT 1030
||||| ||| ||| || ||| ||||||| | ||| | |||||||||||||||| ||
Sbjct 591 GTTTTCCGGT-ACA--AAAAGAGGTTGGAAACAGCTTT-TGCCACTTCTGCTAGAGCGTT 646
Query 1031 CTCCGAACCTAACAAAAT-TGTGTCTCGAGTCTCTCTTCTTA-ATACTTCAGGGTCTGTA 1088
|||||||| ||| ||||| || || || |||| || || ||| || | | |
Sbjct 647 CTCCGAACTTAA-AAAATCTG-GT-TC---TCTCGGGTC-TACATAATT-A----C-ACA 693
Query 1089 TCATGGCACAGATGAAGAT-GAGTTTGAT-GAAATTCACATTCCCCGGAGTA-ACAAAGT 1145
| ||| || || | | || | ||||| | | ||||| || ||| || || |||| |
Sbjct 694 T-TTGG-AC-GAAG-ACATCG-GTTTG-TAGGGATTCAAATACCCTTGAATATCCAAA-T 746
Query 1146 TAACATG-TTGCGTATCATA-CAGTGTCAAGGAACTGAAAACGAGCTGAAACACATTAGC 1203
|| ||| || |||||| | || | ||| |||| || || || ||||||||||||||||
Sbjct 747 AAAGATGCTT-AGTATCA-AGCAATATCATGGAAGTGCAACCGTGCTGAAACACATTAGC 804
Query 1204 CATTTCTTACTGAAAATGGAGTGTCTTCAATTGGTGCAAGTCAATTTTTCAGA-GACAAT 1262
|||||||||||||| ||||| | |||| || ||||| |||| | || ||| || |||
Sbjct 805 CATTTCTTACTGAATATGGAATATCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGA-AAT 863
Query 1263 TGTTGACTCCAAAAAGGTGCAACTCACAGAGGATCTGATGAAGCTTCCCTCTGCTTCATC 1322
| |||| |||||||| ||||||||||||||| |||| ||||| |||| | ||||||||
Sbjct 864 GGATGACACCAAAAAGATGCAACTCACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCATC 923
Query 1323 CAGGCTC-ACGATGCAAGTCATTT 1345
|| |||| | ||| || |||||||
Sbjct 924 CAAGCTCGA-GATACAGGTCATTT 946
> Ahg323113 jgi|Araly1|323113|fgenesh1_pm.C_scaffold_5000657
Length=1272
Score = 158 bits (85), Expect = 1e-37
Identities = 436/600 (73%), Gaps = 46/600 (8%)
Strand=Plus/Plus
Query 473 TTCCTTCTGATACGTGTCTTCCGGTTCTTAAGATTCTCGTCCTTGATTCGA--TT-TGGT 529
||||| | ||||| | ||| || | || ||| ||||| |||||||||| | || ||||
Sbjct 440 TTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGATTCAATCTTCTGGT 499
Query 530 TT--G-ATAGAATAAAGTTCTCTAATGTGCTTCTTGCTGGATGCCCTGCACTTGAGGACT 586
|| | || | || || || |||||||||||||| |||| ||||||||||||||||||||
Sbjct 500 TTAGGCAT-G-ATCAA-TTATCTAATGTGCTTCTCGCTGCATGCCCTGCACTTGAGGACT 556
Query 587 TAACCATAGACCAAAAGTCTTTTCCAGGG--TTGCCGAACGTTGTTTCGAGCAAAACCGT 644
|||||||| | | ||| || |||||| || | | ||| | || ||||||| | |
Sbjct 557 TAACCATACATTACGAGTATTATCCAGGACATT-CATA-CGTCATATCCAGCAAAAGCAT 614
Query 645 TAAGAGTCTATCCA-TCGTCTATAAATATTC-TGCTGAT-TTCGATTGGTTTCGCACTGT 701
||||| || || | | | || |||| | | | || || ||| | | ||| | |
Sbjct 615 TAAGAAACTCTC-AGTTACC-ATTAATAGTAGTTATTATGTT-GATCAATCTAGCATTCT 671
Query 702 TGCACTTGACACACCAAACCTTGTC-ACCCTCCT-CTACTCT-ACCTATGCTCGGCATAG 758
| ||||||||||||| || ||| | ||| || | ||||||| | ||| |||||| ||
Sbjct 672 TACACTTGACACACCTAATGTTGCCGACC-TC-TACTACTCTGAT-TATCCTCGGCGTAA 728
Query 759 GTATCGACATTG-CAATTTAGAGTCCCTTGTCAAT-GCTACACTGGATCTTCATTTCTTA 816
| || || ||| ||||| || || ||| ||| |||||| || | ||||||||||||
Sbjct 729 ATCTCCACGTTGTCAATTG-GATTCAGTTG-CAAAAGCTACATTGAACCTTCATTTCTTA 786
Query 817 GAAA-ATTGT-G--ATGAGGCTTTTGAAC-CGAATGTGACGGATCTCATGATTGCGG-TA 870
||| ||| | | | | | ||| | || ||||||| |||||||| | || || ||
Sbjct 787 -AAAGATTATCGCCAGGTGAAAAGTGA-CGCGGATGTGACCGATCTCATCAGTG-GGATA 843
Query 871 CGCAATGTCCAGATGCTTCATTTGACTTCTTCTG-CTA-CTGAGGTGATTTCGCAATGCT 928
|| || ||| ||| ||||| |||||| ||| | || | || |||||| | |||||
Sbjct 844 CGTAACGTCAAGACCCTTCACTTGACTA-TTCCGACTGTCAAAG-TGATTTTGGTATGCT 901
Query 929 GCAAAGGCGGGCTCCCCATGTTCAAAAACCTCCTTGTTTTAGTGTTTTTGGGTAACACTG 988
||||||| | || || ||||||| |||||| ||| |||| |||||| | |||| | |
Sbjct 902 GCAAAGGTGAACTACCGGTGTTCAACAACCTCGTTGATTTAATGTTTTCGAGTAAAA--G 959
Query 989 AACGAGTTTGGAAAGTGTTTCTTCCACTTCTGCTAGAGCATTCTCCGAACCTAACAAAAT 1048
| | || |||||||||| |||| || ||||||||||||| |||||| ||||||| |||||
Sbjct 960 A-CAAGGTTGGAAAGTGCTTCTGCCTCTTCTGCTAGAGCGTTCTCCAAACCTAA-AAAAT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5