BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44820.1
Length=2649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484882 jgi|Araly1|484882|fgenesh2_kg.5__874__AT3G44820.1 1247 0.0
> Ahg484882 jgi|Araly1|484882|fgenesh2_kg.5__874__AT3G44820.1
Length=1743
Score = 1247 bits (675), Expect = 0.0
Identities = 733/762 (96%), Gaps = 0/762 (0%)
Strand=Plus/Plus
Query 247 TTGGTTTTGCAAGACAGGACTGTCAAGTGATATCACTGTTGTTGTTGATGATGTGAAGTT 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TTGGTTTTGCAAAACAGGACTGTCAAGTGATATCACTGTTGTTGTTGATGATGTGAAGTT 212
Query 307 CCATCTTCATAAGTTTCCATTGGTTTCAAAATGTGGAAAGCTAGCAAGGATGTATGAAGA 366
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 213 CCATCTTCATAAGTTTCCATTGGTTTCTAAATGTGGAAAGCTAGCACGGATGTATGAAGA 272
Query 367 TTCTAAAAGCACTGATAAGCAATCTCTCTGGACAACAGTCCTTGAAGAGTTCCCTGGTGG 426
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 273 TTCTAAAAGCACTGATAAGCAATCTCTCTGGACAACAGTGCTTGAAGAGTTCCCTGGTGG 332
Query 427 TGCAGACAATTTCTTGATAGTTGCGAGATTCTGTTACGGGGCTCGAGTAGATATCACCTC 486
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 333 CGCAGACAATTTCTTGATAGTTGCGAGATTCTGTTACGGGACTCGAGTAGATATCACCTC 392
Query 487 GAAAAACTTAGTTTCCATACACTGTGCAGCTGAGTACCTTGAAATGACAAATGAATATGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GAAAAACTTAGTTTCCATACACTGTGCAGCTGAGTACCTTGAAATGACAAATGAATATGG 452
Query 547 GGAAGATAACTTGATTTCCCAAGTTGAAACTTTTTTGCACAAGCACGTGCTTCGCAATTG 606
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 453 GGAAGATAACTTAATTTCCCAAGTTGAAACATTTTTGCACAAGCATGTGCTTCGCAATTG 512
Query 607 GAAAGACTGTATCTTGGCGTTACAAAGCTCTAGTCCGGTGTTGAAGAGTGCAGAAAAGCT 666
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 513 GAAAGACTGTATCTTGGCGTTACAAAGTTCTAACCCGGTGTTGAAGAGTGCAGAAAAGCT 572
Query 667 TCAGATGATACCAAAACTCATGAACGCTGTGTCCACAATGGTGTGTACTGACCCGAGTTT 726
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 573 TCAGATGATACCCAAACTCATGAACGCTGTGTCCACGATGGTGTGTACTGACCCAAGTTT 632
Query 727 ATTTGGATGGCCAATGATGATGTATGGTACATTGCAGAGTCCAGGTGGAAGCATTTTATG 786
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 633 GTTTGGATGGCCCATGATGATGTATGGTACATTGCAGAGTCCGGGTGGAAGCATTTTATG 692
Query 787 GAATGGAATAAACACGGGGGCGCGAATGAGAAGCTCAGGTTCGGATTGGTGGTATGAAGA 846
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 693 GAATGGAATAAACACGGGGGCGCGAATGAGAAGCTCGGGTTCGGATTGGTGGTATGAAGA 752
Query 847 TATCTCTTATCTTAGTGTAGATTTGTTTAAAAGACTCATCAAGACAATGGAAACAAAAGG 906
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 753 TATCTCTTATCTTAGTGTAGATTTGTTTAAAAGGCTCATCAAGACGATGGAAACGAAAGG 812
Query 907 TATACGTGCTGAAAGTTTAGCCGGCGCTATGATGTACTATGCGAGAAAGTACTTACCGGG 966
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 813 TATACGTGCTGAAAGTTTAGCCGGTGCGATGATGTATTATGCGAGAAAGTACTTGCCGGG 872
Query 967 TTTAGGACGGTGGCAGAGTGGAACAAGTGACAGTAGCAAAAG 1008
||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 873 TTTGGGACGGTGGCAGAGCGGAACAAGTGACAGCAGCAAAAG 914
Score = 1103 bits (597), Expect = 0.0
Identities = 678/718 (94%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1439 GATAGCTACATGGCAGAAGTCGCTTCTGATGTGAATCTGAAACCGGATAAAATGCGGTCT 1498
|||||||||||||| || || ||||| ||||||||||| |||||||||| |||||||||
Sbjct 1027 GATAGCTACATGGCTGAGGTTGCTTCCGATGTGAATCTAAAACCGGATACGATGCGGTCT 1086
Query 1499 CTTGCAGCAGCTCTTCCAGAATCTTCAAGACCGTTGTATGATGGTTTATACAGAGCGTTT 1558
|||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |||
Sbjct 1087 CTTGCAGCAGCTCTTCCAGAGTCTTCAAGACCCTTGTATGATGGTCTATACAGAGCATTT 1146
Query 1559 GATATTTATTTCAAGGAGCATCCATGGCTATCAGATAGAGACAAGGAACAACTATGCAAC 1618
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1147 GATATCTATTTCAAGGAGCATCCATGGCTATCAGATAAAGACAAGGAACAACTCTGCAAC 1206
Query 1619 ATCATGGACTATCAAAGACTCTCTATAGACGCTTGCGCTCATGCTTCCCATAACGATAGG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 ATCATGGACTATCAAAGACTCTCTATAGACGCTTGCGCTCATGCTTCCCATAACGATAGG 1266
Query 1679 TTACCGCTTAGAGTTGTTCTCCAAGTACTCTTCTTTGAACAAATGCATCTCAGAACCGCT 1738
||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1267 TTACCACTCAGAGTTGTTCTTCAAGTCCTCTTCTTTGAACAAATGCATCTCAGAACCGCT 1326
Query 1739 CTTGCAGGTGGTCTAAATGTTGCAAACACCGAAACAGCTCATGCAGTGACGATCCCTGGT 1798
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1327 CTTGCAGGCGGTCTCAATGTTGCAAACACCGAAACAGCTCATGCACTGACGATCCCTGGT 1386
Query 1799 GGAAGAACAGGACAGGAGATAGTTCAGAGAGATGGTTGGGTGACTGTTGTGCGCCAAAAC 1858
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1387 CGAAGAACTGGACAGGAGATAGTTCAGCGAGATGGTTGGGTGACTGTTGTGCGCCAAAAC 1446
Query 1859 CAGGTTTTGAAAGTTGATATGCAGAAAATGAGGTCAAGGGTTGGAGAACTAGAAGAGGAG 1918
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1447 CAGGTTTTAAAAGTTGATATGCAGAAAATGAGGTCACGGGTTGGAGAATTAGAAGAGGAG 1506
Query 1919 TTTCAGAGTATTAAGCAGGAGATGAAGAAGAGAGTTAGTAAGTCCTCTAGCTCAATGAGC 1978
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1507 TTTCAGAGTATCAAGCAGGAGATGAAGAAGAGAGTGAGCAAGTCCTCTAGCTCAATGGGC 1566
Query 1979 TCGCCTCGTCTGGTCAAGCTCGGCTGTAAGTTTCTTCTTCCACGAGCTTCTGATGCTAAG 2038
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1567 TCGCCTCGTCTGGTCAAGCTCGGCTGTAAGTTTCTTCTTCCACGAGCCTCTGATGCCAAG 1626
Query 2039 AATGATACAGTCCAGAACTCAGTGTCCAGCACTCCTAGATCAGCTACCGCTGACCATACA 2098
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1627 AATGATACAGTCCAGAACTCAGTGTCCAGCACTCCTAGATCTGCTGCCGCTGACCACGCA 1686
Query 2099 CTCCCTCGTTCCTCCCGCCATTCCAAACACCGTAAAAGCTTCTC-TTTCTTCGGATAA 2155
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 1687 CTCCCTCGTTCCTCCCGCCATTCCAAACACCGCAAAAGCTTCTCCTTT-TTCGGATAA 1743
Score = 176 bits (95), Expect = 7e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1221 GAATGCAGTTGGAGCTAGCAACGCTCGATAATCTTCTGATTTTGAACTATTCTGATTCAG 1280
|||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 914 GAATGCAGTTGGAGCTCGCAACGCTCGAGAATCTTCTGATTCTGAACTATTCTGATTCAG 973
Query 1281 AGACGTTGTACAATGTAGATTGTGTAGAACGAATAGTCCGCCATTTT 1327
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 974 AGACGTTGTACAATGTAGATTGTGTAGAACGAATAGTCCGTCATTTT 1020
Score = 97.1 bits (52), Expect = 6e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 200 ATGTCACCTGTTGCTAAAGTCTCTGAGTTTCACAGAGAAGGGAACGATTGGT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACCTGTTGCTAAAGTCTCTGAGTTTCACAGAGAAGGGAACGATTGGT 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99910712635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5