BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44830.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323168 jgi|Araly1|323168|fgenesh1_pm.C_scaffold_5000712 3081 0.0
> Ahg323168 jgi|Araly1|323168|fgenesh1_pm.C_scaffold_5000712
Length=1998
Score = 3081 bits (1668), Expect = 0.0
Identities = 1890/2000 (95%), Gaps = 4/2000 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCCACTTCTCCGGTTTAGAAAACTATCGTCCTTCTCTGAAGATACCATTAACCCT 60
||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGCCTCCACTTCTCCGGTTTAGAAAACTATCGTCCTTCTCTGAAGAGACCGTTAACCCT 60
Query 61 AAACCCAAACAATCGGCAACCGTCGAGAAACCAAAACGGCGCCGTTCCGGGAGATGTAGC 120
||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 AAAGCCAAACAATCGGCCACCGTCGAGAAACCAAAACGTCGTCGTTCCGGGAGATGTAGC 120
Query 121 TGCGTTGACTCATGTTGCTGGTTGATTGGTTATCTCTGTACGGCGTGGTGGCTTCTCCTC 180
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 121 TGCGTTGACTCATGTTGCTGGCTGATTGGTTATCTCTGTACGGCTTGGTGGCTTCTTTTA 180
Query 181 TTTCTTTACCACTCTGTTCCGGTCCCGGCGATGCTTCAAGCTCCGGAGTCTCCGGGAACT 240
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTCTATCACTCTGTTCCGGTCCCGGCGATGCTTCAAGCTCCGGAGTCTCCGGGAACT 240
Query 241 CGGTTGAGTCGAGACGGTGTCAAGGCGTTTCATCCGGTGATTCTTGTTCCGGGGATTGTA 300
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 241 CGGTTGAGTCGAGACGGTGTCAAGGCGCTGCACCCGGTGATTCTTGTTCCGGGGATTGTA 300
Query 301 ACCGGCGGGCTCGAGCTTTGGGAAGGTCGGCCTTGCGCTGAAGGACTCTTTCGTAAACGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGGCGGGCTCGAGCTTTGGGAAGGTCGGCCTTGCGCTGAAGGACTCTTTCGTAAACGT 360
Query 361 CTTTGGGGTGCTAGCTTCTCCGAGATTCTTAGAAGGCCATTGTGCTGGTTGGAGCACTTA 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTTGGGGTGCTAGCTTCACCGAGATTCTTAGAAGGCCATTGTGCTGGTTGGAGCACTTA 420
Query 421 TCTCTAGACAGTGAGACCGGTCTCGATCCATCGGGAATCCGTGTCCGAGCAGTCCCAGGA 480
||||| ||||||||||| |||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 421 TCTCTGGACAGTGAGACTGGTCTCGACCCACCGGGAATACGAGTCCGAGCAGTCCCAGGA 480
Query 481 CTAGTGGCTGCAGACTATTTCGCACCATGCTACTTTGCTTGGGCAGTTCTCATAGAGAAT 540
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CTGGTGGCTGCAGACTATTTCGCACCGTGCTACTTTGCTTGGGCAGTTCTCATAGAGAAT 540
Query 541 TTGGCAAAAATTGGATATGAAGGCAAGAACCTTCACATGGCCTCTTATGATTGGAGACTC 600
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TTGGCGAAAATTGGATATGAAGGCAAGAACCTTCATATGGCCTCTTATGATTGGAGACTC 600
Query 601 TCTTTCCATAACACCGAGGTACGTGACCAATCGTTAAGTAGACTGAAGAGCAAAATCGAG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 TCTTTCCATAACACCGAGGTACGTGACCAATCGTTAAGTAGACTGAAGAGTAAAATCGAG 660
Query 661 CTAATGTATGCCACCAATGGGTTTAAGAAAGTTGTGGTGGTTCCGCATTCAATGGGGGCT 720
|||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||
Sbjct 661 CTAATGTATGCCACCAATGGGTATAAGAAAGTGGTGGTGGTGCCTCATTCAATGGGGGCT 720
Query 721 ATCTATTTCCTTCACTTCCTTAAATGGGTAGAAACACCTCTTCCTGATGGAGGCGGTGGG 780
||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||
Sbjct 721 ATCTATTTCCTTCACTTCCTTAAGTGGGTGGAAACACCTCTTCATGATGGAGGAGGTGGT 780
Query 781 GGTGGTCCAGGTTGGTGTGCCAAACACATCAAATCCGTCGTCAACATTGGACCCGCCTTT 840
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 GGTGGTCCAGGTTGGTGCGCCAAACACATCAAAGCCGTCGTCAACATTGGACCCGCCTTT 840
Query 841 TTAGGTGTTCCTAAAGCCGTCAGTAATTTACTTTCTGCTGAAGGCAAAGACATCGCTTAC 900
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 841 TTAGGTGTCCCTAAAGCCGTCAGTAATTTGCTTTCAGCTGAGGGCAAAGACATCGCTTAC 900
Query 901 GCCAGATCTTTGGCTCCAGGTCTCTTGGACTCGGAACTTCTCAAGCTGCAAACACTCGAA 960
|||||||| || || || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 GCCAGATCGTTAGCACCCGGTCTCCTGGACTCGGAACTTCTCAAGCTGCAAACACTCGAA 960
Query 961 CACCTTATGCGGATGTCACATAGCTGGGATTCAATAGTATCTTTATTACCAAAGGGCGGT 1020
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 961 CATCTTATGCGGATGTCACATAGCTGGGATTCAATAGTTTCTTTATTACCAAAGGGGGGT 1020
Query 1021 GAGGCAATTTGGGGCGATCTAGACTCGCACGCTGAAGAAGGACTCAATTGTATTTACTCC 1080
|||||||| ||||| ||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 1021 GAGGCAATCTGGGGAGATCTTGACTCGCACGCTGAAGAAGGCCACAATTGTATTTACTCC 1080
Query 1081 AAGAGAAAATCATCGCAGCTATCGCTAAGTAATCTCCATAAACAAAACTACAGCCTTAAA 1140
|||||||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||
Sbjct 1081 AAGAGAAAATCATCGCAGCTATTGCTAAGTAGTCTCCATAGACAAAACTACAGCAATAAA 1140
Query 1141 CCGGTGTCACGGGTGAAAGAACCCGCAAAGTACGGAAGAATCGTATCTTTCGGGAAACGA 1200
|||| ||| ||||||||||||||||||| ||||||||||| || ||||||| ||||||
Sbjct 1141 CCGGAGTCTTGGGTGAAAGAACCCGCAAAATACGGAAGAATTATAGCTTTCGGAAAACGA 1200
Query 1201 GCATCAGAACTGCCTTCCTCACAACTCTCTACGCTAAACGTCAAGGAACTGTCAAGAGTA 1260
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1201 GCATCTGAACTGCCTTCCTCACAACTCTCTACGCTAAACATCAAGGAACTGTCAAGAGTA 1260
Query 1261 GA-TGGCAATTCAAATGACAGTACATCATGTGGAGAGTTTTGGTCAGAGTACAATGAAAT 1319
|| | ||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1261 GACT-GCACTTCAAACGACAGTACATCATGTGGAGAATTTTGGTCGGAGTACAATGAAAT 1319
Query 1320 GAGCCGAGAAAGCATAGTAAAAGTAGCAGAAAACACAGCTTATACAGCCACCACTGTTCT 1379
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1320 GAGCCGAGAAAGCATAGTAAAAGTAGCAGAAAACACAGCTTACACGGCCACCACTGTTCT 1379
Query 1380 TGATCTTCTTCGATTTATAGCCCCTAAGATGATGAGACGAGCCGAAGCTCATTTCTCTCA 1439
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 TGATCTTCTCCGATTTATAGCCCCTAAGATGATGAGACGAGCTGAAGCTCATTTCTCTCA 1439
Query 1440 CGGCATTGCTGATGATCTTGATGACCCTAAGTATGGACATTATAAGTACTGGTCTAATCC 1499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGGCATTGCTGATGATCTCGATGACCCTAAGTATGGACATTATAAGTACTGGTCTAATCC 1499
Query 1500 ACTCGAGACCAAATTACCGGAGGCACCAGAGATGGAAATGTACTGTCTTTACGGAGTAGG 1559
||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 ACTCGAGACAAAATTACCGTATGCACCAGAGATGGAAATGTACTGTCTTTATGGAGTAGG 1559
Query 1560 GATTCCGACCGAGAGATCTTACATATACAAGCTCGCAACCTCTTCCGGTAAATGCAAGAG 1619
||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1560 GATTCCGACAGAAAGATCTTACATATACAAGCTCGCAACCTCTTCCAATAAATGCAAGAG 1619
Query 1620 CAGCATTCCCTTC-CGGATAGATGGATCTCTGGATGGAGATGACGTTTGTCTTAAGGGAG 1678
||||||||||||| | ||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 1620 CAGCATTCCCTTCAC-GATAGATGGATCTGTGAATGGAGATGACGTTTGTCTTAAAGGAG 1678
Query 1679 GAACACGGTTTGCGGACGGAGACGAGAGTGTACCGGTGATAAGTGCGGGGTTTATGTGCG 1738
|||| ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1679 GAACTCGGTTTGCGGATGGAGACGAGAGTGTACCGGTCATAAGTGCTGGATTTATGTGCG 1738
Query 1739 CAAAGGGATGGAGAGGAAAAACACGGTTTAACCCGTCAGGGATGGATACATTCTTGCGGG 1798
||||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||
Sbjct 1739 CAAAGGGGTGGAGAGGAAAAACACGGTTTAACCCGTCGGGGATGGAGACATTCGTGCGGG 1798
Query 1799 AATACAAACATAAGCCGCCGGGAAGTCTACTAGAAAGTCGAGGAACGGAAAGCGGAGCTC 1858
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1799 AATACAAACACAAGCCGCCAGGAAGTCTACTGGAAAGTCGAGGAACGGAAAGCGGAGCTC 1858
Query 1859 ATGTAGACATAATGGGTAATGTTGGACTCATTGAAGATGTTTTGAGGATAGCTGCCGGAG 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 ATGTAGACATAATGGGTAATGTTGGACTCATTGAAGATGTTTTGAGGATAGCTGCCGGAG 1918
Query 1919 CTTCAGGCCAGGAGATTGGTGGCGATAGAATTTACTCGGATGTGATGAGGATGTCGGAGA 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CTTCAGGCCAGGAGATTGGTGGCGATAGAATTTACTCGGATGTGATGAGGATGTCGGAGA 1978
Query 1979 GAATTAGCATCAAGTTGTGA 1998
| ||||||||||||||||||
Sbjct 1979 GGATTAGCATCAAGTTGTGA 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5