BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G44840.1

Length=1047
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937138 jgi|Araly1|937138|scaffold_501329.1                        510    7e-144


> Ahg937138 jgi|Araly1|937138|scaffold_501329.1
Length=567

 Score =  510 bits (276),  Expect = 7e-144
 Identities = 385/436 (88%), Gaps = 14/436 (3%)
 Strand=Plus/Plus

Query  73   GGATTGCTTGAAGCAGCTACCGAGAAGATCAACGAAGCCATCTCCACGAAACTCAATATA  132
            ||||||||||||||||| |  ||||||||||||||||||||||| | ||||||| | || 
Sbjct  45   GGATTGCTTGAAGCAGCAAAGGAGAAGATCAACGAAGCCATCTCTATGAAACTCGACATC  104

Query  133  GACCTCGCTTCAAATCTTGTTAACATAGCTGATTTCGGTTGTTCCACTGGACCTAATACT  192
            | | || |||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct  105  GTCTTCACTTCAAATCTTGTTAACATAGCAGATTTTGGTTGTTCCACTGGACCTAACACT  164

Query  193  TTCAGAGCGGTTCAAACCATAATAGATGCCGTGGAACACAAGTATCAACAAGAAAATAAT  252
            ||||||||||| |||||||||||||||||||||||||||||||||           | ||
Sbjct  165  TTCAGAGCGGTACAAACCATAATAGATGCCGTGGAACACAAGTAT-----------T-AT  212

Query  253  CTCGAGGAAATAGAGTTCCAAGtttttttCAACGATTCTTCAAACAACGATTTCAACACT  312
            ||| | |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  213  CTCCATGAAACAGAATTCCAAGTTTTCTTCAACGATTCTTCAAACAACGATTTCAACACT  272

Query  313  CTCTTCAAGACACTTCCTCCAGCTAGAAAATATTTTGCAACTGGAGTTCCAGCCTCTTTC  372
            |||||| ||||||||||||| |||||||||||||||| |||||||||||| |  ||||||
Sbjct  273  CTCTTCGAGACACTTCCTCCGGCTAGAAAATATTTTGTAACTGGAGTTCCGGGTTCTTTC  332

Query  373  TTTGGACGTGTTCTTCCTAGGAGCAGTCTCCATGTCGGAGTTTCTTCTTACTCACTCCAT  432
            ||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct  333  TTTGGCCGTGTTCTTCCTAGGAGAAGTCTTCATGTCGGAGTTTCTTCTTATTCACTCCAT  392

Query  433  TTCTTATCCAAGATTCCCAA-GAAAATTAAAGACTGCGATTCTCATGCGTGGAACAAGGA  491
            ||| ||||||||||| |||| |||| |||||||| | ||||||||||  |||||||||||
Sbjct  393  TTCGTATCCAAGATTTCCAAAGAAA-TTAAAGACCGTGATTCTCATGTATGGAACAAGGA  451

Query  492  CATACACTGCACCGGA  507
            |||||||||||| |||
Sbjct  452  CATACACTGCACTGGA  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38961621174


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5