BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44850.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231 2407 0.0
Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1 1303 0.0
> Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231
Length=1647
Score = 2407 bits (1303), Expect = 0.0
Identities = 1507/1606 (94%), Gaps = 11/1606 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGACAAAAACAACGGACGTGTGAATGACGAAAGTGAGTACTCGTCGGAGGAC 60
||||||||||| |||||| |||||||||||| ||||||| ||| ||||| |||||||||
Sbjct 1 ATGGCGGAGGAAAAAAACGGCGGACGTGTGAACGACGAAACTGAATACTCATCGGAGGAC 60
Query 61 GAAGGAACAGAGGATTATAAGAAAGGAGGATACCATACAGTAAGAGTCGGTGATACTTTT 120
||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 61 GAAGGTACGGAGGATTATAAGAAAGGAGGATACCATACGGTGAGAGTTGGTGATACTTTT 120
Query 121 AAGAATGGAGCTTATGTGATTCAGAGTAAACTTGGTTGGGGGCATTTCTCCACTGTTTGG 180
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 121 AAAAATGGAGCTTATGTGATTCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGG 180
Query 181 CTTGCTTGGGATACGCAAGAATCGCGTTATGTAGCTTTGAAAGTTCAGAAGAGTGCTCAA 240
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTTGCTTGGGACACTCAAGAATCGCGTTATGTAGCTTTGAAAGTTCAGAAGAGCGCTCAA 240
Query 241 CATTATACAGAGGCAGCAATGGATGAGATAAAGATTTTGAAACAGATAGCTGAAGGTGAC 300
|| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 241 CACTATACAGAGGCAGCAATGGATGAGATAAAGATTCTGAAACAGATTGCTGAAGGTGAC 300
Query 301 TCGGGTGATAAGAAGTGTGTTGTAAAGCTACTGGATCATTTCAAGCATACGGGTCCTAAT 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 CCGGGTGATAAGAAGTGTGTTGTAAAGCTACTGGATCATTTCAAGCATTCGGGTCCTAAT 360
Query 361 GGGAAGCATGTTTGTATGGTTTTCGAGTATTTGGGAGATAACCTTTTGTCGGTTATTAAG 420
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 361 GGGAAACATGTTTGTATGGTTTTTGAGTATTTGGGAGATAACCTTTTGTCAGTTATTAAG 420
Query 421 TACAGTGATTACCGAGGGGTTCCTCTTCACATGGTTAAAGAGCTTTGTTTTCATATTTTG 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 TACAGTGATTACCGAGGGGTTCCTCTTCACATGGTTAAAGATCTCTGTTTTCATATTTTG 480
Query 481 GTTGGGTTGGATTATCTTCATCGTGAGCTTTCTATTATTCATACTGATTTAAAGCCGGAG 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GTTGGGTTGGATTATCTTCATCGTGAGCTCTCTATTATTCATACTGATTTAAAGCCGGAG 540
Query 541 AATGTTCTGCTTTTGTCTACGATTGATCCGTCGAGAGATG-TGAGGAGATCAGGTGTTCC 599
||||||||||||||||||||||||||||| || ||||||| | |||| || ||||||||
Sbjct 541 AATGTTCTGCTTTTGTCTACGATTGATCCATCAAGAGATGCT-CGGAGGTCGGGTGTTCC 599
Query 600 ACTTGTTCTGCCTATAACCAAGGACAAGATTGTTTCTGAGTCTGCTGTTAAACCTGAAAC 659
|||||||||||| | |||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 600 ACTTGTTCTGCCAACCGCCAAGGACAAAATTGTTTCTGAGGCTGCTGCTAAACCTGAAAC 659
Query 660 TAAAAGTTATACGTACAATGGTGATTTGACAAAGAATCAGAAGAAGAAGATTCGTAAGAA 719
||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 660 TAAGAGTTATACGTATGATGGGGATTTGACAAAGAATCAGAAAAAGAAGATTCGTAAGAA 719
Query 720 AGCGAAGAA---GGTGGTGGCTCAAGATTTTGGTGGAGAGGAAGCTTTGGAAGAAAGTGA 776
||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 720 AGCGAAGAAGGTGGTGGTGGCTCAAGATTGTGGTGGAGAGGAAGCTTTAGAAGAAAATGA 779
Query 777 GAGAGATTCTAACTCCGAAGCAAGAATAAATGGCAATTCCACCGTAGAGAGATCTGAAGG 836
||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||
Sbjct 780 AAGAGATTCTAACTCCGAAGCAAGAACAAATGGCAATTCCACTGTAGAGAGATCGGAAGG 839
Query 837 AAGTTCCACAAGATTAATGGAAGGTGAAGAAGCCAGAGAGAAGGCTAACAAAAAGAATGG 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGTTCCACAAGATTAATGGAAGATGAAGAAGCCAGAGAGAAGGCTAACAAAAAGAATGG 899
Query 897 TCGGGGTAGTAGGAGAGGAAGCCGATCCACAAGGCAGAAATTACTGAGTGATATAGAGTG 956
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 TCGGGGTAGTAGGAGAGGAAGCCGAACCACAAGGCAGAAATTACTGAGTGATATAGAGTG 959
Query 957 CAAATGCAAATTAGTAGATTTTGGGAATGCTTGTTGGACATATAAACAGTTCACAAGCGA 1016
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CAAATGCAAATTAGTAGATTTTGGTAATGCTTGTTGGACATATAAACAGTTCACAAGCGA 1019
Query 1017 TATTCAGACAAGACAGTATCGATGTCCAGAGGTTGTTCTTGGCTCAAAATACTCAACTTC 1076
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1020 TATTCAGACAAGGCAGTACCGATGTCCAGAGGTTGTTCTTGGATCAAAATACTCAACCTC 1079
Query 1077 TGCAGATATGTGGTCCTTTGCTTGTATTTGTTTCGAGCTGGCCACCGGAGATGTCTTGTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1080 TGCAGATATGTGGTCCTTTGCTTGTATTTGTTTCGAGCTGGCCACCGGAGATGTCCTATT 1139
Query 1137 CGATCCTCACAGTGGTGAAAATTATGACCGGGATGAGGATCACCTGGCATTGATGATGGA 1196
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGATCCTCACAGCGGTGAAAACTATGACCGGGATGAGGATCACCTGGCATTGATGATGGA 1199
Query 1197 GCTTCTAGGGATGATGCCACGAAAGATTGCATTAGGTGGTCGATACTCACGAGATTTCTT 1256
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1200 GCTTCTCGGGATGATGCCACGAAAGATTGCATTAGGTGGTCGATACTCGCGGGATTTTTT 1259
Query 1257 CAACCGACAAGGTGAGCTAAGGCACATCCGGCGGTTGCGGTTTTGGCCCATCAGCAAAGT 1316
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAACCGACAAGGTGAACTAAGGCACATCCGGCGGTTGCGGTTTTGGCCCATCAGCAAAGT 1319
Query 1317 CTTGAAGGAGAAATATGATTTCAGCGAGCAGGACGCAAAAGACATGTCAGATTTCTTAGT 1376
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1320 CTTGAAGGAGAAATATGATTTCAGCGAGCAGGACGCAAAAGACATGGCAGATTTCTTAGT 1379
Query 1377 CACAATTCTTGAATTTGTGCCTGAGAAGAGACCAACAGCCGCCCAATGCCTAAAACACCC 1436
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1380 CCCAATTCTTGAATTTGTGCCTGAGAAGAGACCAACAGCCGCCCAATGCCTAACACACCC 1439
Query 1437 ATGGTTCAATCCTGGCCCGAGATTGCTTGAACCGTCACTGAAACCACAACAACCaaaagg 1496
|||||||| ||| ||||| ||||| || ||||| ||| ||||||| ||||| ||||||||
Sbjct 1440 ATGGTTCACTCCAGGCCCAAGATTACTGGAACCATCATTGAAACCGCAACATCCAAAAGG 1499
Query 1497 agaagaagaaggagcagcaaatgagaacatagaaaaggaaaaggacgaaagagaagCAAT 1556
||||| || | |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 AGAAG--GA-G---CAGCAAATGAGAACATAGAAAAGGAAAAGGACGAAAGAGAGGCAAT 1553
Query 1557 GGAAGCTGGTGTAGGGAATATCGCTATTGATGTCTCTGAACCGAAG 1602
||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1554 GGAGGCTGGTGTAGGGAATATCGCCATTGATGGCTCTGAACCGAAG 1599
> Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1
Length=1678
Score = 1303 bits (705), Expect = 0.0
Identities = 1346/1642 (82%), Gaps = 98/1642 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGACAAAAACAACGGACGTGTGAATGACGAAAGTGAGTACTCGTCGGAGGAC 60
|||||||| || || ||| |||||||||| ||||| ||||| |||||||| ||||||
Sbjct 5 ATGGCGGATGAGAAGAACGGTGGACGTGTGAGTGACGCTAGTGACTACTCGTCTGAGGAC 64
Query 61 GAAGGAACAGAGGATTATAAGAA-AGGAGGATACCATACA-GTAAGAGTCGGTGATACTT 118
||||||||||| ||||| |||| |||||| |||||| | || |||||||||||||||
Sbjct 65 GAAGGAACAGAAGATTA-CAGAAGAGGAGGTTACCAT-GAGGTTCGAGTCGGTGATACTT 122
Query 119 TTAAGAATGGAGCTTATGTGATTCAGAGTAAACTTGGTTGGGGGCATTTCTCCACTGTTT 178
|||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 123 TTAAGAATGGTTCTTATGTCATTCAGAGTAAGCTTGGTTGGGGACATTTCTCCACTGTCT 182
Query 179 GGCT-TGCTTGGGATACGC-AAGAATCGCGTTATGTAGCTTTGAAAGTTCAGAAGAGTGC 236
|||| | ||||||| || | || |||| || || |||||||||||| | |||||||||||
Sbjct 183 GGCTCT-CTTGGGACACTCTAA-AATCTCGATACGTAGCTTTGAAAATCCAGAAGAGTGC 240
Query 237 TCAACATTATACAGAGGCAGCAATGGATGAGATAAAGATTTTGAAACAGATAGCTGAAGG 296
||| || || || ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct 241 TCAGCACTACACTGAGGCGGCAATGGATGAGATAAAGATCTTGAAACAGATTGCGGAAGG 300
Query 297 TGACTCGGGTGATAAGAAGTGTGTTGTAAAGCTACTGGATCATTTCAAGCATACGGGTCC 356
|||| | | ||||||||||||||||| ||||| || |||||||||||||| | |||||
Sbjct 301 TGACGCCGAAGATAAGAAGTGTGTTGTGAAGCTTCTTGATCATTTCAAGCACGCAGGTCC 360
Query 357 TAATGGG-AAGCATGTTTGTATGGT-TTTCGAGTATTTGGGAGATAACCTTTTGTCGGTT 414
||||||| || |||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 361 TAATGGGCAA-CATGTTTGTATGGTCTTT-GAGTATTTGGGAGATAACCTCTTGTCGGTT 418
Query 415 ATTAAGTACAGTGATTACCGAGGGGTTCCTCTTCACATGGTTAAAGAGCTTTGTTTTCAT 474
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 419 ATCAAGTACAGCGATTACCGAGGGGTTCCTCTTCATATGGTTAAAGAGCTCTGTTTTCAT 478
Query 475 ATTTTGGTTGGGTTGGATTATCTTCATCGTGAGCTTTCTATTATTCATACTGATTTAAAG 534
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 479 ATTTTGGTTGGGTTGGATTATCTTCATCGTGAGCTTTCGATTATTCATACTGATATCAAG 538
Query 535 CCGGAGAATGTTCTGCTTTTGT-CTACGATTGATCCGTCGA-G-AGATG-TGAGGAGATC 590
|| ||||| ||||||||| || | || ||||| || | || | ||||| | ||| |||
Sbjct 539 CCAGAGAACATTCTGCTTT-GTTCCACTATTGACCC-T-GAAGCAGATGCTC-GGAAATC 594
Query 591 AGGTG-TTCCACTTGTTCTGCCTA-TAACCAAGGACAAGATTGTTTCT-GAGT--CTG-C 644
|| | |||| |||||||| || | | | |||||||||| |||| || ||| | | |
Sbjct 595 GGG-GATTCCTCTTGTTCTTCCAACTG-CTAAGGACAAGACTGTT-CTTGAGAGACAGGC 651
Query 645 TGTTAAACCTGAAACTAAA-AGTTATACGTACAATG-GTGATTTGACAAAGAATCAGAAG 702
|| ||| ||||| || ||||| ||||||| || | |||||||| |||||||||||
Sbjct 652 TGA-AAAGGAGAAACCCAAGAGTTACACGTACAGTGCG-GATTTGACTAAGAATCAGAAA 709
Query 703 AAGAAGATTCGTAAGAAAGCGAAGAAGGTGGT-GGCTCAAG-ATTTTGGTGGAGAGGAAG 760
||||||||||| |||||||| ||||| |||| || ||||| || | |||||||| ||||
Sbjct 710 AAGAAGATTCGGAAGAAAGCTAAGAAAGTGGAAGG-TCAAGGATGT-GGTGGAGAAGAAG 767
Query 761 -CTTTGGAAGA-AAGTGAGAGAGATTCTAACTCCGAAGCAAGA-ATAAATGGCAATTCCA 817
|| | | || || |||||||||||||||||| || |||||| | ||| || ||| | |
Sbjct 768 GCTCAG-AGGATAA-TGAGAGAGATTCTAACTCTGAGGCAAGACA-AAACGGAAATGCAA 824
Query 818 CCGTAGAGAGATCTGAAG-GAAGTTCC-ACAAGATTAATGGAAGGTGAAGAAGCCAGAGA 875
| || ||||| || |||| || |||| | |||| ||| ||| || ||| | | |
Sbjct 825 CGGTGGAGAGGTCGGAAGAGA-GTTCTGA-AAGAGTAA---AAGATGCAGA-GA-AT-GT 876
Query 876 GAAGGCTAACAAAAAGAATGGTCGGGGTAGTAGGAGAGGAAGCCGATCCACAAGGCAGAA 935
| | | ||||| || | ||||| | |||||||||||| |||||||| |||| ||
Sbjct 877 TA-G--T--CAAAA-GA--GC-CGGGGCAATAGGAGAGGAAGTCGATCCACGCGGCA-AA 926
Query 936 A-TTACT-GAGTGATATAGAGT-GCAAATGCAAATTAGTAGATTTTGGGAATGCTTGTTG 992
| ||||| | | ||| | || | | |||||||| ||||| ||||||||||||||||||||
Sbjct 927 AGTTACTTGCG-GATGTTGA-TCGGAAATGCAAGTTAGTGGATTTTGGGAATGCTTGTTG 984
Query 993 GACATATAAACAGTTCACAAGCGATATTCAGACAAGACAGTATCGATGTCCAGAGGTTGT 1052
||| ||||||||||| || || |||||||||||||||||||| || ||||| ||||||||
Sbjct 985 GACTTATAAACAGTTTACGAGTGATATTCAGACAAGACAGTACCGGTGTCCTGAGGTTGT 1044
Query 1053 TCTTGGCTCAAAATACTCAACTTCTGCAGATATGTGGTCCTTTGCTTGTATTTGTTTCGA 1112
||||||||||||||||||||| || || ||||||||||| |||||||| |||||||| ||
Sbjct 1045 TCTTGGCTCAAAATACTCAACCTCAGCGGATATGTGGTCATTTGCTTGCATTTGTTTTGA 1104
Query 1113 GCTGGCCACCGGAGATGT-CT-TGTTCGATCCTCACAGTGGTGAAAA-TTATGACCGGGA 1169
||| |||||||||||||| || | || |||||||||||||||||||| || ||| |||||
Sbjct 1105 GCTTGCCACCGGAGATGTTCTAT-TT-GATCCTCACAGTGGTGAAAACTT-TGAGCGGGA 1161
Query 1170 TGAGGATCACCTGGCATTGATGATGGAGCTTCTAGGGATGATGCCACGAAAGATTGCATT 1229
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1162 TGAGGATCACTTGGCATTGATGATGGAGCTTCTTGGGATGATGCCACGAAAGATTGCATT 1221
Query 1230 AGGTGGTCGATACTCACGAGATTTCTTCAACCGACAAGGTGAGCTAAGGCACATCCGGCG 1289
|||||| || | || || ||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 1222 AGGTGGACGCCATTCGCGGGATTTCTTCAACCGACAGGGTGAACTGAGGCACATCAGGCG 1281
Query 1290 GTTGCGGTTTTGGCC-CATCAGCAAAGTCTTGA-AGGAGAAATATGATTTCAGCGAGCAG 1347
||| ||||||||||| | | ||||| ||||| | || | |||||||| ||||||||| |
Sbjct 1282 GTTACGGTTTTGGCCACTT-AGCAAGGTCTTAACAG-ATAAATATGACTTCAGCGAGGAA 1339
Query 1348 GACGCAAAAGACAT-GTCA-GATTTCTT-AGTCACAATTCTTGAATTTGTGCCTGAGAAG 1404
||||||| | | | | || |||||| | | || || ||||||||||||| |||||||||
Sbjct 1340 GACGCAATTG-CTTTG-CAAGATTTCATCATTCCCA-TTCTTGAATTTGTACCTGAGAAG 1396
Query 1405 AGACCAACAGCCGCCCAATGCCTAAAACACCCATGGTTCAATCCTGG-CCCGAGATTGCT 1463
||||| || || || || ||||||| ||||||||| | ||||| || ||| | || ||
Sbjct 1397 AGACCGACGGCTGCTCAGTGCCTAACGCACCCATGGATGAATCC-GGTCCCTAAATCACT 1455
Query 1464 TGAA-CCGTCACTGAAACCACAACAACCaaaaggagaagaagaaggagcagcaaatgaga 1522
||| ||||||| || |||||| |||| |||| | ||||||| | || || |||||
Sbjct 1456 -GAAACCGTCACCGAGTCCACAAAAACCCAAAG-AT--GAAGAAGTACCA-CA--TGAGA 1508
Query 1523 acatagaa--aaggaaaaggacgaaagagaagCAATGGAAGCTGGTGTAGGGAATATCGC 1580
| | | || |||||||| || || || ||||| ||||| | |||||| |||||||||||
Sbjct 1509 ATA-A-AACGAAGGAAAATGATGAGAGGGAAGCCATGGAGGTTGGTGTTGGGAATATCGC 1566
Query 1581 TATTGATGTCTCTGAACCGAAG 1602
||||||| ||| ||||| |||
Sbjct 1567 CATTGATGGCTCAGAACCAAAG 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5