BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44860.1
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484885 jgi|Araly1|484885|fgenesh2_kg.5__877__AT3G44860.1 1602 0.0
> Ahg484885 jgi|Araly1|484885|fgenesh2_kg.5__877__AT3G44860.1
Length=1120
Score = 1602 bits (867), Expect = 0.0
Identities = 1041/1124 (93%), Gaps = 15/1124 (1%)
Strand=Plus/Plus
Query 25 AATCATCACAAGACCAGAGTTAAAAGAGAGACATGTCGACTTCATTCACAATGATCGGCG 84
||| |||||||||| |||| || |||||| ||||||||||||| ||||||||||||||||
Sbjct 2 AATTATCACAAGACAAGAGATAGAAGAGAAACATGTCGACTTCTTTCACAATGATCGGCG 61
Query 85 GTGAAGGTCCCAACAGTTACCGGGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 144
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 GTGAAGGTCGCAACAGTTACCAAGAACATTCGAAATACCAGGGAGCACTGGTTATAGCTG 121
Query 145 CAAAGGAAAAGATCAATGAAGCCATCTCCACGAAACTCGATATCGACTTTACTTCAAATC 204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 122 CAAAGGAAAAGATCAATGAAGCCATTTCCACGAAACTCGATATCGACTTTACTTCAAATC 181
Query 205 TTGTTAACATAGCTGATTTTGGTTGTTCCTCTGGACCGAACACTTTCACCGCGGTACAAA 264
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 182 TTGTTAACATAGCAGATTTTGGTTGTTCCTCTGGACCAAACACTTTCACAGCGGTACAAA 241
Query 265 CCTTAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTAATATTGAGGGAATCGAGT 324
|| ||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 242 CCATAATTGATGCTGTGGAAAACAAGTATAAGAAAGAAAGTACCATCGATGGAATCGAGT 301
Query 325 TCCAAGTTTTCTTCAATGATTCTTCAAACAACGATTTTAACACTCTCTTCAAGACACTTC 384
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 302 TCCAAGTTTTCTTCAATGATTCTTCTAACAACGATTTCAACACTCTGTTCAAGACACTTC 361
Query 385 CTCCGGCTAGACTG-TATTTCGCAAGTGGAGTACCGGGTTCTTTCTTTGGTCGTGTTCTT 443
||||||||||| | |||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 362 CTCCGGCTAGAA-GATATTTCGCAACCGGAGTTCCGGCTTCTTTCTTTGGTCGTGTTCTT 420
Query 444 CCTAAAAATAGTCTTCATGTGGGAGTTTCTTCTTACTCACTCCATTTCGTATCCAAGGTT 503
|||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 421 CCTAGAAATAGTCTCCATGTGGGAGTTTCTTCTTATTCACTCCATTTCGTTTCCAAGATT 480
Query 504 CCCAAAGAAATCAAAGACCGTGACTCGCTTGTGTGGAACAAAGACATACATTGCTCCGGA 563
|| ||||||||||||||||| || |||| ||| |||||| | |||||||||||||| |||
Sbjct 481 CCTAAAGAAATCAAAGACCGCGATTCGCCTGTTTGGAACCAGGACATACATTGCTCTGGA 540
Query 564 TCTTCAAAAGAAGTTGTGAAATTGTATCTCGGTCAATACAAGATCGACGTGGGAAGTTTC 623
||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 541 TCTTCAAAAGAAGTTACAAAATTGTTTCTCGATCAATACAAGATCGACGTGGGGAGTTTC 600
Query 624 TTGACCGCGAGAGCTCAAGAGCTCGTGTCCGGTGGATTACTATTGCTTCTTGGTTCATGT 683
|||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 601 TTGAACGCGAGAGCTCAAGAGCTCGTGTCTGGTGGATTGCTATTGCTTCTTGGATCATGT 660
Query 684 CGTCCAACTGGAGTTCAAATGTTTGAAACGGTTGAAGGCATGATGATTGATTTCATTGGA 743
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 CGTCCAAATGGAGTTCAAATGTTTGAAACGGTTGAAGGAATGATGATTGATTTCATTGGA 720
Query 744 AG-TTCTCTTAATGAAATTGCTAACCAGGGTCTCATAGATCAACAAAAGCTTGACACTTT 802
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 -GCTTCTCTTAATGAAATTGCTAACCAGGGTCTAATAGATCAACAAAAGCTTGACACTTT 779
Query 803 TAAATTGCCTATCTATGCTCCA-AATGTGGATGAATTGAAGCAAATCATCGAGGATAACA 861
||||||||||||||| |||||| || | |||||||||||||||||||||||||||||||
Sbjct 780 TAAATTGCCTATCTACGCTCCACAA-GCGGATGAATTGAAGCAAATCATCGAGGATAACG 838
Query 862 AGTGTTTCACGATTGAGGCATTCGAAAAGATTAGCCACGCAAAGGGGGAGTATCCGTTAG 921
|||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 839 GGTGTTTCACGGTTGAGGTATTCGAAAAAATTAGCCACGCAATGGGGGAGTATCCGTTAG 898
Query 922 ACCCCGAGTATTTGACG-TC-CGCGTTTAAGGTCACTGTTGGAGGATCAGTAGCTTCACT 979
||||||||| ||||||| || | | ||||||||||| ||||||||||| |||||||||||
Sbjct 899 ACCCCGAGTTTTTGACGGTCTC-C-TTTAAGGTCACGGTTGGAGGATCTGTAGCTTCACT 956
Query 980 ATTTGGGCAAGATGGGATGGAGAAAACCTATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1039
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 ATTTGGGCAAGATGCGATGGAGAAAACATATGAGCTTGTGAAAGAGAAGACGCAAGAAAT 1016
Query 1040 GCTTCCTCAAATAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGGAA 1099
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1017 GCTTCCTCAATTAGCCAAAGCCAAACCTGGAATGCAATACCTCATTGTGCTTCGAAGAAA 1076
Query 1100 CTGATTTC-ATGAT-A-T--AGATCTGTGAAATGAAATAAATCT 1138
|||||||| ||| | | | ||||||||||||||||||||||||
Sbjct 1077 CTGATTTCCATGGTCAATGTAGATCTGTGAAATGAAATAAATCT 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5