BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44880.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937141 jgi|Araly1|937141|scaffold_501332.1 2579 0.0
> Ahg937141 jgi|Araly1|937141|scaffold_501332.1
Length=1655
Score = 2579 bits (1396), Expect = 0.0
Identities = 1573/1659 (95%), Gaps = 10/1659 (1%)
Strand=Plus/Plus
Query 242 TCCAACA-AACCAAACT-AGAAAAATGTCAGTAGTTTTACTCTCTTCTACTTCTGCAACA 299
||| ||| ||||||| | || ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 TCC-ACATAACCAAA-TCAG-AAAATGTCAGTGGTTTTACTATCTTCTACTTCTGCAACA 57
Query 300 ATCACCAAATCCCAATCCAAAAAGATTCCCTTTTTATCTCCCACCACAAAATTCCCATT- 358
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ATCACAAAATCACAATCCAAAAAGATTCCCTTTTTATCTCCCACCACAAAATTCCCATTC 117
Query 359 AAAGGTCTCAATTTCTCCATCAAGATCGAAACTTTTCCACAACCCTTTACGCGTGGCGGC 418
||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 118 AAA-GTCTCAATTTCTCCATCAAGATCAAAACTTTTCAACAACCCTTTACGCGTGGCGGC 176
Query 419 GCCGCCGTCTGTACCCACTTCGGATTCGACGGAGGAGAAGCGGATCGAAGAAGAATACGG 478
||| ||||| |||||||||||||| || |||||||||||||||| |||||||| | |||
Sbjct 177 GCCACCGTCAATACCCACTTCGGATCCGGCGGAGGAGAAGCGGATAGAAGAAGAGTTCGG 236
Query 479 CGGAGATAAGGAAGAAGAAGGGTCTGAGTTTAAGTGGAGAGATCATTGGTATCCAGTTTC 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGAGATAAGGAAGAAGAAGAGTCTGAGTTTAAGTGGAGAGATCATTGGTATCCAGTTTC 296
Query 539 TTTGGTTGAGGATTTGGATCCGAATGTGCCAACCCCGTTCCAGCTCTTGGGTCGAGACCT 598
|||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 297 TTTGGTGGAGGATTTGGATCCGAATGTACCAACCCGGTTTCAGCTCTTGGGTCGAGACCT 356
Query 599 TGTACTCTGGTTTGATCGGAATGATCAGAAATGGGCAGCCTTTGATGATCTCTGCCCTCA 658
||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 357 TGTCCTCTGGTTTGATCGGAATGATCAGAAATGGGCCGCCTTTGATGATCTTTGTCCTCA 416
Query 659 CCGGCTCGCTCCTTTATCTGAAGGAAGGTTGGATGAGAATGGACACTTGCAATGTTCGTA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CCGGCTCGCTCCTTTATCTGAAGGAAGGTTGGATGAGAATGGACACTTGCAATGTTCGTA 476
Query 719 TCATGGATGGTCATTTGGTGGGTGTGGATCTTGCACTAGGATTCCTCAGGCTGCTACTTC 778
|||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 TCATGGATGGTCCTTTAGTGGGTGTGGATCTTGTACTAGGATTCCACAGGCTGCTACTTC 536
Query 779 AGGTCCTGAAGCTCGTGCTGTTAAATCCCCGAGAGCTTGTGCTATTAAGTTCCCGACAAT 838
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 537 AGGTCCTGAAGCTCGTGCTGTTAAATCCCCGAGAGCTTGCGCTATTAAGTTTCCGACAAT 596
Query 839 GGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGTGTCTCAAGGTCTTCTCTTTGTGTGGCCTGATGAAAATGGTTGGGATAGAGCCAATTC 656
Query 899 AATTGAACCCCCTAGGTTGCCGGATGATTTCGATAAACCGGAATTTTCGACGGTGACAAT 958
||||||||| ||||||||||| |||||||| |||| ||| ||||||||||||||||||||
Sbjct 657 AATTGAACCGCCTAGGTTGCCAGATGATTTTGATAGACCAGAATTTTCGACGGTGACAAT 716
Query 959 TCAAAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCTTCCCA 1018
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCAGAGGGATCTTTTCTATGGATATGATACTCTCATGGAAAATGTATCTGATCCTTCCCA 776
Query 1019 TATAGATTTTGCTCATCACAAGGTTACAGGAAGAAGAGACAGAGCCAAACCATTGCCGTT 1078
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TATTGATTTTGCTCATCACAAGGTTACAGGAAGAAGAGACAGAGCCAAACCATTGCCGTT 836
Query 1079 CAAGGTGGAGTCAAGTGGGCCTTGGGGTTTCCAAGGTGCGAATGATGACAGTCCAAGGAT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 CAAGGTGGAGTCAAGTGGGCCTTGGGGTTTCCAAGGTGCGAATGATGACAATCCAAGGAT 896
Query 1139 AACCGCAAAATTTGTTGCTCCGTGCTATTCTATGAACAAAATTGAGTTAGATGCGAAACT 1198
||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct 897 AACCGCAAAATTTGTTGCTCCGTGCTATTCTTTGAACAAAATTGAGATCGATGCGAAGCT 956
Query 1199 ACCAATCGTCGGTAATCAAAAATGGGTCATTTGGATTTGCTCATTCAATATACCAATGGC 1258
||||||| ||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 957 ACCAATCTTCGGTAATCAAAAATGGGTAATTTGGATTTGCTCATTTAACATACCAATGGC 1016
Query 1259 TCCAGGAAAGACCCGTTCCATCGTTTGCAGCGCCCGTAACTTCTTTCAGTTCTCTGTACC 1318
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1017 TCCAGGAAAGACCCGTTCCATCGTTTGCAGCGCCCGTAACTTCTTCCAATTCTCTGTACC 1076
Query 1319 AGGACCAGCTTGGTGGCAGGTTGTACCAAGATGGTATGAACACTGGACTTCGAACTTAGT 1378
|||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||
Sbjct 1077 AGGACCCGCTTGGTGGCAGGTTGTACCGAGATGGTATGAACACTGGACATCAAACTTGGT 1136
Query 1379 CTATGACGGAGACATGATCGTACTTCAAGGACAAGAGAAAGTATTCCTCGCTAAATCAAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 CTATGACGGAGACATGATCGTACTTCAAGGACAAGAGAAAGTATTCCTCTCTAAATCAAT 1196
Query 1439 GGAGTCACCAGACTACGACGTGAACAAACAGTACACAAAGCTCACATTCACTCCAACCCA 1498
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GGAGTCACCGGACTACGACGTGAACAAACAGTACACAAAGCTCACATTCACTCCAACCCA 1256
Query 1499 GGCAGACCGTTTTGTTCTAGCATTCAGAAACTGGCTCAGACGGCATGGTAAGAGTCAGCC 1558
||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1257 AGCAGACCGTTTCGTTCTAGCCTTCAGAAACTGGCTTAGACGGCATGGCAAGAGTCAGCC 1316
Query 1559 TGAATGGTTCGGCTCCACCCCGTCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCG 1618
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGAATGGTTCGGCTCCACCACGGCTAACCAACCTCTCCCTTCCACTGTCTTAACCAAGCG 1376
Query 1619 TCAGATGCTAGATAGATTTGATCAGCATACACAAGTATGCTCTTCCTGCAAAGGAGCTTA 1678
||||||||| ||||||||||| |||||||||||||| || || || ||||||||||||||
Sbjct 1377 TCAGATGCTTGATAGATTTGAGCAGCATACACAAGTGTGTTCATCATGCAAAGGAGCTTA 1436
Query 1679 CAACAGTTTCCAAATCCTCAAGAAGTTTCTCGTTGGCGCGACGGTTTTCTGGGCCGCCAC 1738
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1437 CAACAGTTTCCAAATCCTCAAGAAGTTTCTTGTTGGCGCGACGGTTTTCTGGGCCGCCAC 1496
Query 1739 GGCTGGTGTTCCTTCTGATGTTCAGATTCGACTGGTTCTTGCTGGTTTATCACTGATATC 1798
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1497 TGCTGGTGTTCCTTCTGATGTCCAGATTCGACTGGTTCTGGCGGGTTTATCACTGATATC 1556
Query 1799 AGCTGCTTCTGCATATGCTTTACATGAACAAGAGAAGAACTTTGTGTTTAGAGATTATGT 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AGCTGCTTCTGCATATGCTTTACATGAACAAGAGAAGAACTTTGTGTTTAGAGATTATGT 1616
Query 1859 ACATTCTGAAATCGAGTAGATTTGT-TGT--GTATATGT 1894
|||||||||||||| ||||| | | ||| ||||||||
Sbjct 1617 CCATTCTGAAATCGAATAGATGTATATGTATGTATATGT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5