BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44890.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484888 jgi|Araly1|484888|fgenesh2_kg.5__880__AT3G44890.1 1123 0.0
> Ahg484888 jgi|Araly1|484888|fgenesh2_kg.5__880__AT3G44890.1
Length=862
Score = 1123 bits (608), Expect = 0.0
Identities = 815/906 (90%), Gaps = 50/906 (6%)
Strand=Plus/Plus
Query 18 ACTACAACTGTGCGCTCTTGTTATCTCTGCTTTGAAGTGAAATCAGC-TTTGGCTATGGC 76
|||| |||||||||||| |||||||||||||||| |||| ||||| ||| || |||||
Sbjct 1 ACTAAAACTGTGCGCTC---TTATCTCTGCTTTGAACTGAACTCAGCATTT-GCAATGGC 56
Query 77 TTCTTCGACAGCTTTGTCTCTCTCATGGAGCTCCTCTCCTTGTTGGTCACACAGCTTCAA 136
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 57 TTCTTCTACAGCTTTGTCTCTCTCATGGAGTTCCTCTCCTTGTTGGTCACACAGCTTCAA 116
Query 137 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTC 176
Query 197 CCAGAAGAAAGCTAAGAAACTTCGCAAGGTAATTTTGAAAGAGGATGTGACGGATTTGGG 256
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 177 CCAGAAGAAAGCTAAGAAACTTCGAAAGGTAATCTTGAAAGAGGATGTGACGGATTTGGG 236
Query 257 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTAC 316
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 TAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTTTTGCCTAC 296
Query 317 TGGAAAGGCTCAGCTTATGACTCCACTTCTGCTCAAGGAATTGAAGATGGAAGACGAACG 376
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 297 GGGAAAGGCTCAGCTTATGACTCCTCTTCTGCTCAAGGAATTGAAGATGGAAGAAGAACG 356
Query 377 GATTGAGGCAGAGAAGCAAAGGGTGAAAGAAGAGGCACAACAACTGGCGATGGTATTCCA 436
||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 357 GATAGAGGCAGAAAAGCAAAGGGTGAAAGAAGAAGCACAACAACTGGCAATGGTATTTGA 416
Query 437 AACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGCGGTAAAGGCAAACTGATATTTGGATC 496
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 GACCGTTGGTGCTTTCAAGGTTAAACGCAAAGGTGGTAAAGGCAAACTGATATTTGGATC 476
Query 497 TGTCACAGCTCAAGACCTCGTCGACATCATCAAATCACAGCTCCAAA-AGGACATCGACA 555
||||||||| |||||||||||||||||||||||| | ||||| |||| || |||| ||||
Sbjct 477 TGTCACAGCACAAGACCTCGTCGACATCATCAAAGCGCAGCTTCAAAGAG-ACATAGACA 535
Query 556 AACGCCTTGTCTCTCTCCCAGAAATCCGTGAAACCGGAGAATACATAGCCGAACTCAAGC 615
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 536 AACGCCTTGTCTCTCTCCCGGAAATACGTGAAACAGGAGAATACATAGCCGAACTCAAGC 595
Query 616 TTCACCCCGATGTCACTGCTCGAGTTAAGATCAATGTTTTCGCTAACTAAACCTTCAACG 675
|||| ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||| |
Sbjct 596 TTCATCCCGATGTCACAGCTCGAGTTAGGATCAACGTTTTCGCCAACTAACCCTTCAATG 655
Query 676 ATTCAAGACTCCTACTGCATCCCAAGGAACGTA--TAGAGAGGGAAAAGAGAGTAGCCTC 733
|||||||||||||||||||||||||| |||| | ||||||||||||||||||| | |||
Sbjct 656 ATTCAAGACTCCTACTGCATCCCAAGAAACGCAGATAGAGAGGGAAAAGAGAGTCGTCTC 715
Query 734 TTGTGGTGAGGATTGAAGGTTGTGAAGTTTTTCCTT-TAGATTGTTTGATGCATTTGTAT 792
||| ||| ||| | | |||||||| ||| ||||| ||||||||||||||||
Sbjct 716 TTG-----AGG-TTG----T-G--AAGTTTTTTCTTGTAGATC-TTTGATGCATTTGTAT 761
Query 793 TTTTGCT-ATTTTTGGAATCTGGAAACGCTAAAAGTATAATATTCTCTTGCAAGTTATGA 851
||||||| ||||||| ||||||||||| || || || | | | | ||
Sbjct 762 TTTTGCTTATTTTTG-AATCTGGAAAC---AA--GT-TA-T-T--------A--T-AT-- 799
Query 852 TATTTACTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 911
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 T-TT--CTTGAAGTTATATTGTATTCATTTGTCTGTTGAAGTGATGAGAATGCTTAAATT 856
Query 912 AACACT 917
||||||
Sbjct 857 AACACT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5