BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G44900.1
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484889 jgi|Araly1|484889|fgenesh2_kg.5__881__AT3G44900.1 3596 0.0
> Ahg484889 jgi|Araly1|484889|fgenesh2_kg.5__881__AT3G44900.1
Length=2454
Score = 3596 bits (1947), Expect = 0.0
Identities = 2292/2461 (93%), Gaps = 14/2461 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTT-TAATGGTGATAGGATCCCTTACCTGAGAGATACATGGAGAGATGCAAACAT 59
|||||||| || |||||||||| | |||||||||||| ||||||||||| ||||||||
Sbjct 1 ATGGAGTTGGAA-GGTGATAGGAACGTTTACCTGAGAGACACATGGAGAGAAGCAAACAT 59
Query 60 GATCTGCGGTATCTTGCCTATTAACCCGAGCTCGAGCGGGCTATGGCCCTCCCCGAAGCT 119
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 60 GATCTGCGGTATCTTGCCTATTAACCCGAGCTCGAGCGGGCTATGGCCATCCCCGAAGAT 119
Query 120 CCCAGATCCTCA-AGCAAACATTGAGTTCT-GGAATTACATGTTTCCACATGTTCAGATC 177
|||||||| | | ||| ||||| |||||| | ||||||||||||||||||||||||||
Sbjct 120 CCCAGATCAT-AGAGCGAACATCAAGTTCTATG-ATTACATGTTTCCACATGTTCAGATC 177
Query 178 ATTTTCCTTATCGTCACTATTCTCTGGCAATTCTTCCATTTCTTCCTCAGACGTCTCGGC 237
||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 178 ATTTTCCTTATCGTCACCATTCTCTGGCAATTCTTCCATTTCTTTCTCAAACGTCTCGGC 237
Query 238 ATGATTCGTTTCACCTCCCATATGCTTACTGGGATTCTCTTGAGCAAGTCGTTTCTTAAG 297
||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| |||
Sbjct 238 ATGATTCGTTTCACCTCTCATATGCTTACTGGGATTCTCCTAAGCAAGTCGTTTCTGAAG 297
Query 298 GAGAATACACCGGCTAGGAAATTCCTCTCGACGGAAGACTATAAAGAGACTCTGTTTGGT 357
||||||||||| || |||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 298 GAGAATACACCCGCGAGGAAATTTTTCTCGACGGAAGACTACAAAGAGACTCTATTTGGT 357
Query 358 TTAGTGGGTGCATGTTCCTACATGATGTTTTGGTTCTTGATGGGAGTTAAAATGGACTTG 417
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTGGTGGGTGCGTGTTCCTACATGATGTTTTGGTTCTTGATGGGAGTTAAAATGGACTTG 417
Query 418 AGTTTGATCCGCAGCACCGGGAGAAAAGCTGTAGCTATCGGTCTTTCCTCAGTGTTACTC 477
|| ||||||||||||| |||| |||||| || |||||||||||||||||||||||||||
Sbjct 418 GGTCTGATCCGCAGCACTGGGAAAAAAGCCGTTGCTATCGGTCTTTCCTCAGTGTTACTC 477
Query 478 TCTATAACGGTTTGCGCCTTGATCTTCTTCTTGATCCTAAGAGATGTAGGGACGAAAAAG 537
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TCTATAACGGTTTGCGCCTTTATCTTCTTCTTGATCTTAAGAGATGTAGGGACGAAAAAG 537
Query 538 GGAGAACCGGTTATGAGTTTCTTTGAAATCATTTTCATCTATTTGATCCAATGCCTTTCG 597
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAGAACCAGTTTTGAATTTCTTTGAAATCATTTTCATCTATTTGATCCAATGCCTTTCG 597
Query 598 TCGTTTCCTGTAATTGGAAACCTTCTTTTTGAGCTTAGGCTCCAGAATTCAGAGCTTGGC 657
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TCGTTTCCCGTAATTGGAAACCTTCTTTTTGAGCTTAAGCTCCAGAATTCAGAGCTTGGC 657
Query 658 CGTCTCGCTATGTCTTCTGCAGTGATCAGTGACTTCAGCACCTCGATCCTCTCTGCGGTT 717
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 CGTCTTGCTATGTCCTCTGCAGTGATCAGTGACTTCAGCACCTCGATTCTCTCTGCGGTT 717
Query 718 CTAGTCTTTCTAAAGGAACTCAAGGACGATAAATCTCGGCTTGGATCAGTTTTTATCGGA 777
||||||||| |||||||||||||||| || ||| ||||||| ||||| |||||||||||
Sbjct 718 CTAGTCTTTATAAAGGAACTCAAGGATGAGAAAACTCGGCTAGGATCCGTTTTTATCGGC 777
Query 778 GATGTTATTGTTGGAAACCGTCCTATGAAGCGTGCGGGCACAGTGGTCTTGTTTGTTTGT 837
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 778 GATGTTATTGTTGGAAACCGTCCTATGAAGCGTGCGGGCACAGTGGTGTTCTTTGTTTGT 837
Query 838 TTTGCCATATACATATTCAGACCATTAATGTTCTTCATTATCAAGAGAACACCTTCTGGT 897
|| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||
Sbjct 838 TTCGCCATATACATATTCAGGCCATTAATGTTCTTCATTGTCAAGAGAACGCCTTCAGGT 897
Query 898 CGTCCCGTAAAGAAATTCTATATATATGCAATCATCATTCTTGTCTTTGGATCAGCCATT 957
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 898 CGTCCCGTAAAGAAATTCTATGTATATGCAATCATCATTCTTGTCTTTGGATCTGCCATT 957
Query 958 CTTGCCGATTGGTGCAAGCAATCTATTTTCATAGGACCTTTTATCTTAGGCTTAGCTGTT 1017
||||| || ||||||||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct 958 CTTGCGGACTGGTGCAAGCAATCTATCTTCATGGGACCTTTCATCTTAGGTTTAGCTGTT 1017
Query 1018 CCACACGGTCCACCTCTAGGCTCTGCAATAC-TTCAGAAGTTTGAGTCTGTGGTTTTCGG 1076
|| |||||||||||| | ||||||||||| | | |||||||| ||||||| |||||||||
Sbjct 1018 CCGCACGGTCCACCTTTGGGCTCTGCAAT-CGTCCAGAAGTTCGAGTCTGCGGTTTTCGG 1076
Query 1077 CACATTCCTTCCTTTCTTTGTGGCTACCTCCGCGGAAGAGATCGATACTTCGATTTTACA 1136
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 CACATTCCTTCCCTTCTTTGTGGCTACCTCCGCGGAAGAGATTGATACTTCGATTTTACA 1136
Query 1137 GTCTTGGATAGATCTCAAGAGTATTGTCATCCTAGTGTCTGTATCGTTTATTGTCAAATT 1196
||||||||||||| ||||||||||| ||||| | |||||| |||||||| ||||||||||
Sbjct 1137 GTCTTGGATAGATTTCAAGAGTATTTTCATCATTGTGTCTATATCGTTTGTTGTCAAATT 1196
Query 1197 CGCTCTCACGACTCTCCCTGCCTTCTTATACGGTATGCCAGCAAAGGATTGCATTGCTCT 1256
|||||||||||||||||| ||||| |||||||||||||||||||| || ||| |||||||
Sbjct 1197 CGCTCTCACGACTCTCCCAGCCTTTTTATACGGTATGCCAGCAAATGACTGCCTTGCTCT 1256
Query 1257 GTCTCTAATTATGTCATTCAAAGGCATTTTCGAGTTCGGTGCTTACGGTTATGCGTATCA 1316
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 CTCTCTTATTATGTCATTCAAAGGCATTTTCGAGTTCGGCGCTTACGGTTATGCGTATCA 1316
Query 1317 AAGAGGGACTATTCGGCCGGTGACCTTTACGGTTTTATCTTTGTACATCTTGTTGAACTC 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 AAGAGGGACTATTCGGCCGGTGACCTTTACGGTTTTATCTTTGTACATCTTGTTTAACTC 1376
Query 1377 TGCAGTCATACCTCCGCTCTTAAAACGCATTTATGATCCTTCGAGGATGTACGCAGGATA 1436
|||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 TGCAGTCATACCTCCGATCTTGAAACGCATTTACGATCCTTCGAGGATGTACGCAGGATA 1436
Query 1437 CGAGAAGCGGAACATGCTTCACATGAAACCAAACTCCGAGCTCAGGATTCTATCGTGTAT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CGAGAAGCGGAACATGCTTCACATGAAACCAAACTCCGAGCTCAGGATTCTATCGTGTAT 1496
Query 1497 CTACAAAACAGACGATATCCGTCCGATGATCAATCTCCTTGAAGCTACTTGTCCCTCAAG 1556
||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1497 CTACAGAACAGACGATATCCGTCCCATGATTAATCTCCTTGAAGCTACTTGTCCCTCAAG 1556
Query 1557 AGAAAACCCTGTAGCTACTTACGTCCTTCACTTGATGGAGCTAGTAGGACAAGCCAATCC 1616
||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||
Sbjct 1557 AGAAAACCCGGTAGCTACTTATGTCCTTCACTTGATGGAGTTAGTAGGACAAGCCAGTCC 1616
Query 1617 AGTCCTCATCTCTCACCGATTACAAACCCGTAAAAGTGAGAACATGTCTTATAATTCTGA 1676
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1617 AGTCCTCATCTCTCACCGATTACAAACCCGTAAAAGCGAGAACGCGTCTTATAATTCTGA 1676
Query 1677 AAACGTCGTTGTCTCATTCGAACAGTTCCACAACGATTTTTTCGGCTCTGTTTTCGTTAG 1736
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1677 AAACGTAGTTGTCTCATTCGAACAGTTCCACAAAGATTTTTTCGGCTCTGTTTTCGTCAG 1736
Query 1737 CACTTACACGGCTTTATCCGTGCCGAAGATGATGCACGGAGACATCTGTATGCTGGCTTT 1796
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 1737 CACTTACACGGCTTTATCCGTCCCGAAGATGATGCACGGGGACATCTGTATGCTGGCTCT 1796
Query 1797 AAACAACACAACGTCTCTCATCATCCTTCCTTTTCACCAGA-CTTGGTCTGCTGATGGAT 1855
|||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||||
Sbjct 1797 CAACAACACAACGTCTCTCATCATCCTTCCTTTTCAC-ATAACTTGGTCCGCTGATGGAT 1855
Query 1856 CAGCCATTGTTTCAGACAGCCTA-ATGATCCGGCAACTGAACAAGAGTGTCCTCGACCTC 1914
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1856 CAGCCATTGTTTCAGACAGCA-AGATGATCCGGAAACTGAACAAGAGTGTCCTCGACCTC 1914
Query 1915 TCTCCTTGCTCTGTCGGAATCTTCGTCTATCGAAGCAGTAATGGACGGAGAACAATCAAA 1974
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1915 TCTCCTTGCTCTGTCGGAATCTTCGTCTACCGAAGCAATAATGGCCGGAGAACAATCAAA 1974
Query 1975 GAGACAGCTGCAAACTTCTCATCTTACCAAGTTTGTATGCTCTTTCTTGGAGGTAAAGAC 2034
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 1975 GAAACAGCTGCAAACTTCTCATCTTACCAAGTCTGTATGCTCTTCCTCGGAGGTAAAGAC 2034
Query 2035 GATAGAGAAGCTTTATCACTCGCCAAGAGAATGGCTCGTGATTCAAGAAT-AACCATCAC 2093
||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |||||
Sbjct 2035 GATAGAGAAGCTTTATCACTCGCTAAGAGAATGGCCCGTGACTCAAGAATCAAC-ATCAC 2093
Query 2094 AGTGGTTTCACTCATCTCTTCCGAACAGAGAGCGAACCAAGCAACCGACTGGGATCGCAT 2153
|||||||||||||||||||||||||||| ||| || ||||||||||| |||||||| ||
Sbjct 2094 CGTGGTTTCACTCATCTCTTCCGAACAGAAAGCTAATCAAGCAACCGATTGGGATCGAAT 2153
Query 2154 GCTCGACTTAGAACTACTCAGAGACGTGAAAAGCAACGTTCTAGCCGGTGCTGACATTGT 2213
||||||||||||||||||||||||||| || ||| ||||||| || |||||||||||| |
Sbjct 2154 GCTCGACTTAGAACTACTCAGAGACGTTAAGAGCCACGTTCTTGCTGGTGCTGACATTTT 2213
Query 2214 CTTCTCCGAGGAAGTAGTGAATGACGCAAATCAAACATCACAATTGTTGAAATCTATTGC 2273
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2214 CTTCTCCGAGGAAGTAGTGAATGACGCAAATCAAACATCACAATTGTTGAAATCAATTGC 2273
Query 2274 GAATGAGTATGATCTGTTCATCGTCGGAAGAGAAAAAGGAAGGAAGAGTGTTTTCACCGA 2333
||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 2274 AAATGAATACGATCTGTTCATAGTCGGAAGAGAGAAAGGAAGGAAGAGTGTTTTCACGGA 2333
Query 2334 GGGGCTTGAAGAATGGAGTGAGTTTGAAGAACTTGGTATCATTGGAGATCTCTTGACTTC 2393
|||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 2334 AGGGCTTGAAGAATGGAGTGAATTCGAGGAACTTGGCGTCATTGGAGATCTCTTGACTTC 2393
Query 2394 ACAGGATCTAAATTGTCAAGCTTCTGTGTTGGTGATACAACAGCAACAACAGATGATCTA 2453
| ||||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 2394 AGAGGATCTTAATTGTCAAGCTTCTGTGTTGGTAATACAGCAACAACAACAGATGATTTA 2453
Query 2454 G 2454
|
Sbjct 2454 G 2454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92483114860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5